These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5319#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1235 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGGTCCCCGGTTACACTCTCACACACGGTTGCACTTTGCTTGTTCGCTCACATGGCTCGAGCCGCTCTTGGAGAAGTGCCTTAGTGAAGTGTTTGTACTGTGTATTATTATTTTTTTTTACTGACTCACTCACCAACCTACCTTTTACATCTTTTTACTATGTACTGCTATTTTTAATATTATTATTGACTACTTTAATGTTAATCTTAACTCGCGCTTAAGTCGCCCCTCTCCCCTCGGATGAGGTGGGGAGGGCGAACCCGAGTCACTCACTCTTCTTTTTTAAGTCAACTTCACCAAAATCTCACTGCCCTATTGTGACTAAGTATTTTTTTTGTTTGTTTGGCTTCCTCCCGCTACTCCGCCTATTTACCACCAATGCACACTTAGCCCAATCGTTCGATTCTTAGTGAGCGAGTGTTATTTAACTACGATTTACTACTACGGAGATGCAAGCGAAAGCGGACACACTCTGTCCGTCGGCCGAACGCGGGGAGGAAGCATTCAA--TTTTTTTAGTTAATTAATTATTATTTTAATCTGTACGAACACT-CCCGC-GCTACTACTTCCTACCCAACTCATCTTCTCCGCCTCCTTCTCTCCTCCTGTCCTCTA-CCCTGTTGTAAGGAATGTGAGATTGTGTGAGCTAGAGCTAGGGGGTGTAGGAAGCGAATGGGAGAGAGGGAGTAAACGAATCAGCCTCCAAACTGCCAATACTGCCAACGGGCCCAACGGGGCACACGCGCCCTGCCGGGCGAATGGTCCCGTAGCTTTTGGTTGGTGTTTTTTATTTTTATTTTTTTTAATTATCATTTTTGCTCCGTTTTTTCACGCGTTTGTCGAGCGAGAAGTGTGTAGCGTAAACGTTGCCTTTGCCCCGTAAACCACCAGAATACAAGCAGCCTTGCAGCATACAGCTAGGGTCCGGTATTAGGATTTGTTTCGTACATTGCACTGCAAAGCAAAAACCCATCCAAACAGCCACTGCCAGTCTGATAGTCGCGAAGGCTTCAGTACAGAAATCGAAAGACAAAAAACCCACTCTTGTGTTTGGTAGAGCAGAAAGCAGCCACCCTTTTTGGTCAGAAACAGCGCAGGAAAGGATACGGAATGATGATTATGATCATTATTATTTTATTATATATTATTATATTATTACGAAATACTTGTTGAACATATTATTGAGGAAAATCATATAAAAACAACTATTTA] [+] EMBL BM583676 [CCGCCCACGCGTCCGCCCACGCGTCCGGTCCCCGGTTACACTCTCACACACGGTTGCACTTTGCTTGTTCGCTCACATGGCTCGAGCCGCTCTTGGAGAAGTGCCTTAGTGAAGTGTTTGTACTGTGTATTATTATTTTTTTTTACTGACTCACTCACCAACCTACCTTTTACATCTTTTTACTATGTACTGCTATTTTTAATATTATTATTGACTACTTTAATGTTAATCTTAACTCGCGCTTAAGTCGCCCCTCTCCCCTCGGATGAGGTGGGGAGGGCGAACCCGAGTCACTCACTCTTCTTTTTTAAGTCAACTTCACCAAAATCTCACTGCCCTATTGTGACTAAGTATTTTTTTTGTTTGTTTGGCTTCCTCCCGCTACTCCGCCTATTTACCACCAATGCACACTTAGCCCAATCGTTCGATTCTTAGTGAGCGAGTGTTATTTAACTACGATTTACTACTACGGAGATGCAAGCGAAAGCGGACACACTCTGTCCGTCGGCCGAACGCGGGGAGGAAGCATTCAA TTTTTTTAGTTAATTAATTATTATTTTAATCTGTACGAACACT CCCGC GCT ] [+] EMBL BX622938 [ TCCGTCGGCCGAACGCGGGGAGGAAGTATTCAATTTTTTTTTAGTTAATTAATTATTATTTTAATCTGTACGAACACT CCCGC GCTACTACTTCCTACCCAACTCATCTTCTCCGCCTCCTTCTCTCCTCCTGTCCTCTA CCCTGTTGTAAGGAATGTGAGATTGTGTGAGCTAGAGCTAGGGGGTGTAGGAAGCGAATGGGAGAGAGGGAGTAAACGAATCAGCCTCCAAACTGCCAATACTGCCAACGGGCCCAACGGGGCACACGCGCCCTGCCGGGCGAATGGTCCCGTAGCTTTTGGTTGGTGTTTTTTATTTTTATTTTTTTTAATTATCATTTTTGCTCCGTTTTTTCACGCGTTTGTCGAGCGAGAAGTGTGTAGCGTAAACGTTGCCTTTGCCCCGTAAACCACCAGAATACAAGCAGCCTTGCAGCATACAGCTAGGGTCCGGTATTAGGATTTGTTTCGTACATTGCACTGCAAAGCAAAAACCCATCCAAACAGCCACTGCCAGTCTGATAGTCGCGAAGGCTTCAGTACAGAAATCGAAAGACAAAAAACCCACTCTTGTGTTTGGTAGAGCAGAAAGCAGCCACC ] [-] EMBL BM648560 [ CTGTACGAACACTCCCCGCGGTTACTACTTCCTACCCAACTCATCTTCTCCGCCTCCTTCTCTCCTCCTGTCCTCTACCCCTGTTGTAAGGAATGTGAGATTGTGTGAGCTAGAGCTAGGGGGTGTAGGAAGCGAATGGGAGAGAGGGAGTAAACGAATCAGCCTCCAAACTGCCAATACTGCCAACGGGCCCAACGGGGCACACGCGCCCTGCCGGGCGAATGGTCCCGTAGCTTTTGGTTGGTGTTTTTTATTTTTATTTTTTTTAATTATCATTTTTGCTCCGTTTTTTCACGCGTTTGTCGAGCGAGAAGTGTGTAGCGTAAACGTTGCCTTTGCCCCGTAAACCACCAGAATACAAGCAGCCTTGCAGCATACAGCTAGGGTCCGGTATTAGGATTTGTTTCGTACATTGCACTGCAAAGCAAAAACTCATCCAAACAGCCACTGCCAGTCTGATAGTCGCGAAGGCTTCAGTACAGAAATCGAAAGACAAAAAACCCACTCTTGTGTTTGGTAGAGCAGAAAGCAGCCACCCTTTTTGGTCAGAAACAGCGCAGGAAAGGATACGGAATGATGATTATGATCATTATTATTTTATTATATATTATTATATTATTACGAAATACTTGTTGAACATATTATTGAGGAAAATCATATAAAAACAACTATTTA] consensusID : consensus_5319#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 985 fasta sequence [AGAATNGCCGAGGGNTAGTGTTATTTAACTACGATTTACTACTAACGGAGATGCAGCGAAAGCGGACACACTCTGGTCCGTCTGGTGAACGCGGGGAGGAAGCACTTCATTTCTTTTTCAGTTAATTAACTTATTATTTTAATCTGTACGAACANTTCCCGGNGGCTAACTACTTTCCTTAACCAAAGTCATTCTATCTCCGGGCTCCTTCTACTACCTCCCTGTGTTCCTTCTAAACCCTGGTANGGTACACGCGGAGACTGTTGAGGACTATCGGTTGGTTGGACGCTAAGCAAGAGCCTTAANGGGCGNTTGGTTACCNCGAAACGGCCGCACACCTTGTGCGCGGCCACGCAACGCGCGGANGNCTCAACAACCGGACAATTCCAAAGGCCCTNCCCGACAACAAGNCCTTGGGCGGCCAAACATAAACCTAGGGNGGCCCAAAACACANGGGGGGACANCCCCAACAAACACGANAGTGNTAGGATCCCCATACCAAAACGANCTGGTCCCCCCCCTTAGTNTGCACCTGCGGNCGCANCCGCCACAATTNGGTGGGTTGCCCCCCCCGCATTCTCACGNACACNTCATCATCTCNGTGCGGCTCACNNCGACGCCTCTGGGTATACATCTCNATCACATCGTCAAATTCTCCATCCTCANNNNACTATTACANCACATCACTGCACGTACATNATATACTAAANCAAGCCGTTTNGTTGAACTTTACCCNAAGCCATTCCTTTCCAATTCATTTANCGTCTGGGGCGCCNTATCCCCCCCACGGGCGACTANTACTATCATGCTAATGATCTANGCCAAACGACCCAGGTACCCCGCTGACACNNTTACTACCNTGGGCGCTNCCCTCGTNAACAGCACCCCCGGGGCNAACAGCNCCCCAAAACACCGATGCCGTTNGNTCAGTAGGCCGTAACAAACGAAGCCACGGTCGGTTTAAACCATCGACACACCGCGGCCG] [+] EMBL AL930586 [AGAATNGCCGAGGGNTAGTGTTATTTAACTACGATTTACTACTAACGGAGATGCAGCGAAAGCGGACACACTCTGGTCCGTCTGGTGAACGCGGGGAGGAAGCACTTCATTTCTTTTTCAGTTAATTAACTTATTATTTTAATCTGTACGAACANTTCCCGGNGGCTAACTACTTTCCTTAACCAAAGTCATTCTATCTCCGGGCTCCTTCTACTACCTCCCTGTGTTCCTTCTAAACCCTGGTANGGTACACGCGGAGACTGTTGAGGACTATCGGTTGGTTGGACGCTAAGCAAGAGCCTTAANGGGCGNTTGGTTACCNCGAAACGGCCGCACACCTTGTGCGCGGCCACGCAACGCGCGGANGNCTCAACAACCGGACAATTCCAAAGGCCCTNCCCGACAACAAGNCCTTGGGCGGCCAAACATAAACCTAGGGNGGCCCAAAACACANGGGGGGACANCCCCAACAAACACGANAGTGNTAGGATCCCCATACCAAAACGANCTGGTCCCCCCCCTTAGTNTGCACCTGCGGNCGCANCCGCCACAATTNGGTGGGTTGCCCCCCCCGCATTCTCACGNACACNTCATCATCTCNGTGCGGCTCACNNCGACGCCTCTGGGTATACATCTCNATCACATCGTCAAATTCTCCATCCTCANNNNACTATTACANCACATCACTGCACGTACATNATATACTAAANCAAGCCGTTTNGTTGAACTTTACCCNAAGCCATTCCTTTCCAATTCATTTANCGTCTGGGGCGCCNTATCCCCCCCACGGGCGACTANTACTATCATGCTAATGATCTANGCCAAACGACCCAGGTACCCCGCTGACACNNTTACTACCNTGGGCGCTNCCCTCGTNAACAGCACCCCCGGGGCNAACAGCNCCCCAAAACACCGATGCCGTTNGNTCAGTAGGCCGTAACAAACGAAGCCACGGTCGGTTTAAACCATCGACACACCGCGGCCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5319#0 CCGCCCACGCGTCCGCCCACGCGTCCGGTCCCCGGTTACACTCTCACACACGGTTGCACT 60 consensus_5319#1 ------------------------------------------------------------ consensus_5319#0 TTGCTTGTTCGCTCACATGGCTCGAGCCGCTCTTGGAGAAGTGCCTTAGTGAAGTGTTTG 120 consensus_5319#1 ------------------------------------------------------------ consensus_5319#0 TACTGTGTATTATTATTTTTTTTTACTGACTCACTCACCAACCTACCTTTTACATCTTTT 180 consensus_5319#1 ------------------------------------------------------------ consensus_5319#0 TACTATGTACTGCTATTTTTAATATTATTATTGACTACTTTAATGTTAATCTTAACTCGC 240 consensus_5319#1 -------------------------------AGAATNGCCGAGGGNTAGTGTTATTTAAC 29 ** * * * ** * *** * * consensus_5319#0 GCTTAAGTCGCCCCTCTCCCCTCGGATGAGGTGGGGAGGGCGAACCCGAGTCACTCACTC 300 consensus_5319#1 ---TA---CGATTTACTACTAACGGA-GATGCAGCGAAAGCGGACACA---CTCTGGTCC 79 ** ** ** * **** ** * * ** *** ** * * ** * consensus_5319#0 TTCTTTTTTAAGTCAACTTCACCAAAATCTCACTGCCCTATTG--TGACTAAGT-ATTTT 357 consensus_5319#1 GTCTGGTGAACGCGGGGAGGA--AGCACTTCATTTCTTTTTCAGTTAATTAACTTATTAT 137 *** * * * * * * *** * * * * * * *** * *** * consensus_5319#0 TTTTGTTTGTTTGGCTTCCTCCCGCTACTCCGCCTATTTACCACCAATGCACACTTAGCC 417 consensus_5319#1 TTTAATCTGTACGAACANTTCCCGGNGG-CTAACTACTTTCC-TTAAC-CAAAGTCATTC 194 *** * *** * ***** * *** ** ** ** ** * * * * consensus_5319#0 CAATCGTTCGATTCTTAGTGAGCGAGTGTTATTTAACTACGATTTACTACTACGGAGATG 477 consensus_5319#1 TA-TCTCCGGGCTCCTTCTACTACCTCCCTGTGTTCCTTCTAAACCCTGGTANGG---TA 250 * ** * ** * * * * * ** * * ** ** ** * consensus_5319#0 CAAGCGAAAGCGGACACACTCTGTCCGTCGGCCGAACGCGGGGAGGAAGCATTCAATTTT 537 consensus_5319#1 CACGCGGAGACTGTTGAGGACTATCGGTTGGTTGGACGCTAAGCAAGAGC---------- 300 ** *** * * * ** ** ** ** * **** * *** consensus_5319#0 TTTAGTTAATTAATTATTATTTTAATCTGTACGAACACTCC-CGCGCTACTACTTCCTAC 596 consensus_5319#1 CTTAANGGGCGNTTGGTTACCNCGAAACGGCCGCACACCTTGTGCGCGGCCACGCAACGC 360 *** * *** * * ** **** **** * ** * consensus_5319#0 CCAACTCATCTTCTCCGCCTCCTTCTCTCCTCCTGTCCTCTACCCTGTTGTAAGGAATGT 656 consensus_5319#1 GCGGANG----NCTCAACAACCGGACAATTCCAAAGGCCCTNCCCGACAACAAG--NCCT 414 * *** * ** * * ** *** *** * consensus_5319#0 GAGATTGTGTGAGCTAGAGCTAGGGGGTGTAGGAAGCGAATGGGAGAGAGGG--AGTAAA 714 consensus_5319#1 TGGGCGGCCAAACATAAACCTAGGGNGGCCCAAAACACANGGGGGGACANCCCCAACAAA 474 * * * ** * ****** * ** * *** ** * * *** consensus_5319#0 CGAATCAGCCTCCAAACTGCCAA--TACTGCCAACGGGCCCAACGGGGCACACGCGCCCT 772 consensus_5319#1 CACGANAGTGNTAGGATCCCCATACCAAAACGANCTGGTCCCCCCCCTTA-GTNTGCACC 533 * ** * *** * * * * ** ** * * ** * consensus_5319#0 GCCGGGCGAATGGTCCCGTAGCTTTTGGTTGGTGTTTTTTATTTTTATTTTTTTTAATTA 832 consensus_5319#1 TGCGGNCGCANCCGCCACAATTNGGTGGGTTGCCCCCCCCGCATTCTCACGNACACNTCA 593 *** ** * ** * *** * * ** * * consensus_5319#0 TCATTTTTGCTCCGTTTTTTCACGCGTTTGTCGAGCGAGAAGTGTGTAGCGTAAACG--T 890 consensus_5319#1 TCATCTCNGTGCGGCTCACNNCGACGCCTCTGGGTATACATCTCNATCACATCGTCAAAT 653 **** * * * * * ** * * * * * * * * * * * consensus_5319#0 TGCCTTTGCCCCGTAAACCACCAGAATACA--AGCAGCCTTGCAGCATACA----GCTAG 944 consensus_5319#1 TCTCCATCCTCANNNNACTATTACANCACATCACTGCACGTACATNATATACTAAANCAA 713 * * * * * ** * * * *** * * * ** *** * * consensus_5319#0 GGTCCGGTATTAGGATTTGTTTCGTACATTGCACTGCAAAGCAAAAACCCATCCAAACAG 1004 consensus_5319#1 GCCGTTTNGTTGAACTTTACCCNAAGCCATTCCTTTCCAATTCATTTANCGTCTGGGGCG 773 * ** *** * * * * * ** * * ** * consensus_5319#0 CCACTGCCAGTCTGATAGTCGCGAAGGCTTCAGTACAGAAATCGAAAGACAAAAAACCCA 1064 consensus_5319#1 CCNTATCCCCCCCACGGGCGACTANTACTATCATGCTAATGATCTANGCCAAACGACCCA 833 ** ** * * * * ** * * * * * **** ***** consensus_5319#0 CTCTTGTGTTTGGTAGAGCAGAAAGCAGCCACCCTTTTTGGTCAGAAACAGCGCAGGAAA 1124 consensus_5319#1 GGTACCCCGCTGACACNNTTACTACCNTGGGCGCTNCCC--TCGTNAACAGCACCCCCGG 891 ** * * * * ** ** ****** * consensus_5319#0 GGATACGGAATGATGATTATGATCATTATTATTTTATTATATATTATTATATTATTACGA 1184 consensus_5319#1 GGCN----AACAGCNCCCCAAAACACCG------------ATGCCGTTNGNTCAGTAGGC 935 ** ** * ** ** ** * * ** * consensus_5319#0 AATACTTGTTGAACATATTATTGAGGAAAATCATATAAAAACAACTATTTA 1235 consensus_5319#1 CGTAACAAACGAAGCCACGGTCGGTTTAAACCATCGACACACCGCGGCCG- 985 ** *** * * * *** *** * * ** * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||