These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5322#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1200 fasta sequence [AAACTAGTGAACTGTCTCACTGTTTCGAATAAGCTTTATTNATAACGCATTCTTAACCAGTGATGACACAATGTCTTTTTACACTTATTTTATGTTTACGACTAATATTGACCTACTTTCATTATGTGGTTGCTAACCTTCCTGTTTTGAGGTTTGTTCATCAAAATATAAAGTCAATGTCCGGTTGTTTGTTTGTCACTTGGTGTTATTGTTGCGCAATCGTTTTGCAGCCGTTCTGAGTTGCGAGGCGCGTTTCATGTTACCGTCGCGTTATGTTTTTATAAGTTGTCGGTTCGCGCTTCCTG-TCCTACGGTTTGTGTGTGCTAAGCATTTATTGCATGGTAGGTTTTCTGTCTCACCTGATTTGATTGCTGGTCAATTTGAATGTGTTTTTAGTTGGATGGTTTCGGTTAGCAACGATTATGTTGAGGTGGCTTTTTGAGTTGGTTCAACTCTTAATGTTATGTGATCCGGTTTTTGGTTAGTAACGATTGTATAACTGCTTAGGTGGCTCTATAGGTTGGTTGAACTGTTAGCAGTAAATCTGCTACACAAGTGTTGAAACGCGTAACGGAAAAACGCTACGAAGCTCCACAGCCGTAGCGTGAGTGAAAGAAAGCCATCTGACGACATACTCAAATCGGAGAACAGTCCCACGAAGGGTAAATCGTCAAATAACTATTACCTCGAAAATAGTTAAAAACGACTCCAAAGAAAACAGCTAGTGCAGATATTAGCTGATCTAAGCCGATTTACGATACTAATCGAGCATCGAACACCGCATCAAGAGATAGCGGAAGGACAAAAAGTCCTACAAAAGTGCAATCCGCACGACTCATGACTCACGACGAGAACGCAAATTCATCGCTGCAAGCAAGATTAAGATCATCGCAGATTCATTCGAAATAACTACGAGCCCGCTGCAAATTTCGCCTGGAGTAGGAAGCTCCTATAACAACATCTTACAAGGGAACGCGTCCGCTGAATCACCGAAAGTTATTACAACAAAACAGGTATTCAAGTAAGCAAACTTGAATCCAGGTGAGTCGTTCCAATTATTAATCAATTAAAACTTACGAAATATTGCAACTCGGAAATCATTTGATTTGTCCAAAATGTCGAAATATTTCGTTTCTAATCCAAACGGCCGCTGCCGCCTGTGTACGGAACAGGATGGAGACGTGCGGCATATAATCGCTG] [-] EMBL BX620965 [AAACTAGTGAACTGTCTCACTGTTTCGAATAAGCTTTATTNATAACGCATTCTTAACCAGTGATGACACAATGTCTTTTTACACTTATTTTATGTTTACGACTAATATTGACCTACTTTCATTATGTGGTTGCTAACCTTCCTGTTTTGAGGTTTGTTCATCAAAATATAAAGTCAATGTCCGGTTGTTTGTTTGTCACTTGGTGTTATTGTTGCGCAATCGTTTTGCAGCCGTTCTGAGTTGCGAGGCGCGTTTCATGTTACCGTCGCGTTATGTTTTTATAAGTTGTCGGTTCGCGCTTCCTG TCCTACGGTTTGTGTGTGCTAAGCATTTATTGCATGGTAGGTTTTCTGTCTCACCTGATTTGATTGCTGGTCAATTTGAATGTGTTTTTAGTTGGATGGTTTCGGTTAGCAACGATTATGTTGAGGTGGCTTTTTGAGTTGGTTCAACTCTTAATGTTATGTCATCCGGTTTTTGGTTAGTAACGATTGTATAACTGCTTAGGTGGCTCTATAGGTTGGTTGAACTGTTAGCAGTAAATCTGCTACACAAGTGTTGTAACGCGTAACGGAAAAACACTACGAAGCTCCACAGTCGTAGCGTGAGTGAAAGAAAGCCATCTGACGACACACTCAAATCGGAGAACAGTCCCACGAAGGGTAAATCGTCAAATAACTATTACCTCGAAAATAGTTAAAAACGACNCCGAAGAAAACAGCTAG ] [+] EMBL CNS08H3O [ gACTGTCTCACTGTTTCGAATAAGCTTTATTTATAACGCATTCTTAAACAGTGATGACACAATGTCTTTTTACACTTATTTTATGTTTACGACTAATATTGACCTACTTTCATTATGTGGTTGCTAACCTTCCTGTTTTGAGGTTTGTTCATCAAAATATAAAGTCAGTTTCCGGTTGTTTGTTTGTCGCTTGGTGTTATTGTTGCGCAATCGTTTTGCAGCCGTTCTGAGTTGCGAGGCGCGTTTCATGTTACCGTCGCGTTATGTTTTTATAAGTTGTCGGTTCGCGCTTCCTG TCCTACGGTTTGTGTGTCCTAAGCATTTATTGCATGGTAGGTTTTCTGTCTCACCTGATTTGATTGCTGGTCAATTTGAATGTGTTTTTAGTTGGATGGTTTCGGTTAGCAACGATTATGTTGAGGTGGCTTTTTGAGTTGGTTCAACTCTTAATGTTATGTGATCCGGTTTTTGGTTAGTAACGATTGTATAACTGCTTAGGTGGCTCTATAGGTTGGTTGAACTGTTAGCAGTAAATCTGCTACACAAGTTTTGAAACGCGTAACGGAAAAACGCTACGAAGCTCCACAGCCGTAGCGTGAGTTAAAGAAAGCCATCTGACGACATACTCAAATCGGAGAACAGTCCCACGAAGGGTAAATCGTCAAATAACTATTACCTCGAAAATAGTTAAAAACGACTCCAAAGAAAACAGCTAGTGCAGATATTAGCTGATCTAAGCCGATTTACGATACTAATCGAGCATCGAACACCGCATCAAGAGATAGCGGAAGGACAAAAAGTCCTACAAAAGTGCAATCCGCACGACTCATGACTCACGACGAGAACGCAAATTCATCGCTGCAAGCAAGATTAAGATCATCGCAGATTCATTCGAAATAACTACGAGCCCGCTGCAAATTTCGCCTGGAGTAGGAAGCTCCTATAACAACATCTTACAAGGGAACGCGTCCGCTGAATCACCGAAAGTTATT ] [-] EMBL CNS08H3N [ GTTTTGCAGCCGTTCTGAGTTGCGAGGCGCGTTTCATGTTACCGTCGCGTTATGTTTTTATAAGTTGTCGGTTCGCGCTTCCTGTTCCTACGGTTTGTGTGTGCTAAGCATTTATTGCATGGTAGGTTTTCTGTCTCACCTGATTTGATTGCTGGTCAATTTGAATGTGTTTTTAGTTGGATGGTTTCGGTTAGCAACGATTATGTTGAGGTGGCTTTTTGAGTTGGTTCAACTCTTAATGTTATGTGATCCGGTTTTTGGTTAGTAACGATTGTATAACTGCTTAGGTGGCTCTATAGGTTGGTTGAACTGTTAGCAGTAAATCTGCTACACAAGTGTTGAAACGCGTAACGGAAAAACGCTACGAAGCTCCACAGCCGTAGCGTGAGTGAAAGAAAGCCATCTGACGACATACTCAAATCGGAGAACAGTCCCACGAAGGGTAAATCGTCAAATAACTATTACCTCGAAAATAGTTAAAAACGACTCCAAAGAAAACAGCTAGTGCAGATATTAGCTGATCTAAGCCGATTTACGATACTAATCGAGCATCGAACACCGCATCAAGAGATAGCGGAAGGACAAAAAGTCCTACAAAAGTGCAATCCGCACGACTCATGACTCACGACGAGAACGCAAATTCATCGCTGCAAGCAAGATTAAGATCATCGCAGATTCATTCGAAATAACTACGAGCCCGCTGCAAATTTCGCCTGGAGTAGGAAGCTCCTATAACAACATCTTACAAGGGAACGCGTCCGCTGAATCACCGAAAGTTATTACAACAAAACAGGTATTCAAGTAAGCAAACTTGAATCCAGGTGAGTCGTTCCAATTATTAATCAATTAAAACTTACGAAATATTGCAACTCGGAAATCATTTGATTTGTCCAAAATGTCGAAATATTTCGTTTCTAATCCAAACGGCCGCTGCCGCCTGTGTACGGAACAGGATGGAGACGTGCGGCATATAATCGCTG] consensusID : consensus_5322#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 913 fasta sequence [TGGCGGGGGCGCGTNTCTGTCCGCGTGTTTTTTTGTTTTTCGCTGGGTCGTGTCTNGCGTNTNNCCCNGTNTCCGGCCGNGTTTTGGTGTGTTNNNGCTNGTCTTGGCTGGGTTAGGTTTTTCTGTTCTCCACCTGTGGATTNTGGTGGCTGGCTCCTATGTGGTAGTTTGGTNTTTTGTAGTTTGGGTANTGTTTTTTCCGGGTTTANGCNGGCGATTTGAGNTGTGGACGTGCCTTTTTNTTGATGTGGCTTTCATACTTCTGTTTATGTTAATGTCATCCGGGTTGTTGGTTATGTNANCGATTGTATAACTGCTTAGGTGGTCTCTATAGTTTGGTTGAACTGTTANCCTATGTANAATCTGCGNACACATGGTGTTGTAACGCGTAAGCGGGAGNNGTCACACTACGAAGCTCCACAGTGCGTAGCGTGAGTGAAAGAGTAGCCATGCTGTCTGACTACACTCNAATCGGAGTACTATGTCCCATCGAAGGNTGAATATCNGTCATAATGACTATTACNNTGCGGAAAATAGTTAANTACGACTGCCGAAGTAAACTAGCTAGTGCTAGATATGAGCTGATNTAAGCCGATTTACGATACATAATCGAGCTGTCGAACACCGCATCAAGAGATAGCGGAAGGACAAAAAAGTCCTACNATAAGTGCAATCCGCACGACTCATGTACTCACGACGTAGAACGCAAATTCATCGCTGCAAGNCAAGATTAAGATCATCGCAGTATTCATTCGAATATAANTACGCACCCGCTGCAAATTTCGCCTGGAGTAGGAAGCTCCTGTANACAACATCTTACAAGGGAACGCGTCCGCTGAATCACCGAAAGTCTATTACAACAAAACAGTATTCAAGTAAGCAAACTTGAATCCAGTTAACCTCGGGATTCTGC] [-] EMBL AL930620 [TGGCGGGGGCGCGTNTCTGTCCGCGTGTTTTTTTGTTTTTCGCTGGGTCGTGTCTNGCGTNTNNCCCNGTNTCCGGCCGNGTTTTGGTGTGTTNNNGCTNGTCTTGGCTGGGTTAGGTTTTTCTGTTCTCCACCTGTGGATTNTGGTGGCTGGCTCCTATGTGGTAGTTTGGTNTTTTGTAGTTTGGGTANTGTTTTTTCCGGGTTTANGCNGGCGATTTGAGNTGTGGACGTGCCTTTTTNTTGATGTGGCTTTCATACTTCTGTTTATGTTAATGTCATCCGGGTTGTTGGTTATGTNANCGATTGTATAACTGCTTAGGTGGTCTCTATAGTTTGGTTGAACTGTTANCCTATGTANAATCTGCGNACACATGGTGTTGTAACGCGTAAGCGGGAGNNGTCACACTACGAAGCTCCACAGTGCGTAGCGTGAGTGAAAGAGTAGCCATGCTGTCTGACTACACTCNAATCGGAGTACTATGTCCCATCGAAGGNTGAATATCNGTCATAATGACTATTACNNTGCGGAAAATAGTTAANTACGACTGCCGAAGTAAACTAGCTAGTGCTAGATATGAGCTGATNTAAGCCGATTTACGATACATAATCGAGCTGTCGAACACCGCATCAAGAGATAGCGGAAGGACAAAAAAGTCCTACNATAAGTGCAATCCGCACGACTCATGTACTCACGACGTAGAACGCAAATTCATCGCTGCAAGNCAAGATTAAGATCATCGCAGTATTCATTCGAATATAANTACGCACCCGCTGCAAATTTCGCCTGGAGTAGGAAGCTCCTGTANACAACATCTTACAAGGGAACGCGTCCGCTGAATCACCGAAAGTCTATTACAACAAAACAGTATTCAAGTAAGCAAACTTGAATCCAGTTAACCTCGGGATTCTGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5322#0 AAACTAGTGAACTGTCTCACTGTTTCGAATAAGCTTTATTNATAACGCATTCTTAACCAG 60 consensus_5322#1 ------------------------------------------------------------ consensus_5322#0 TGATGACACAATGTCTTTTTACACTTATTTTATGTTTACGACTAATATTGACCTACTTTC 120 consensus_5322#1 ------------------------------------------------------------ consensus_5322#0 ATTATGTGGTTGCTAACCTTCCTGTTTTGAGGTTTGTTCATCAAAATATAAAGTCAATGT 180 consensus_5322#1 ------------------------------------------------TGGCGGGGGCGC 12 * * * consensus_5322#0 CCGGTTGTTTGTTTGTCACTTGGTGTTATTGTTGCGCAATCGTTTTGCAGCCGTTCTGAG 240 consensus_5322#1 GTNTCTGTCCGCGTGTTTTTTTGT-TTTTCGCTGGGTCGT-GTCTNGC-GTNTNNCCCNG 69 *** * *** ** ** ** * * ** * * ** * ** * * * consensus_5322#0 TTGCGAGGCGCGTTTCATGTTACCGTCGCGTTATGTTTTTATAAGTTGTCGGTTCGCGCT 300 consensus_5322#1 TNTCCGGCCGNGTTT--TGGTGTGTTNNNGCTN-GTCTTGGCTGGGTTAGGTTTTTCTGT 126 * * * ** **** ** * * * * ** ** * * * ** * * consensus_5322#0 TCCTGTCCTACGGTTTGTGTGTGCTAAGCATTTATTGCATGGTAGGTTTTCTGTCTCACC 360 consensus_5322#1 TCTCCACCTGTGGATTNTG-GTGGCTGGCTCCTAT---GTGGTAG---TTTGGTNTTTTG 179 ** *** ** ** ** *** ** *** ****** ** ** * consensus_5322#0 TGATTTGATTGCTGGTCAATTTGAATGTGTTTTTAGTTGGATGGTTTCGGTTAGCAACGA 420 consensus_5322#1 TAGTTTGGGTANTGTTTTTTCCGGGT------TTANGCNGGCGATTTGAGNTGTGGACGT 233 * **** * ** * * * * *** * * *** * * *** consensus_5322#0 ----TTATGTTGAGGTGGCTTTTTGAGTTGGTTCAACTCTTAATGTTATGTGATCCGGTT 476 consensus_5322#1 GCCTTTTTNTTGATGTGGCTTTCATACTTCTGTTTA-TGTTAATGTCATCCG----GGTT 288 ** * **** ******** * ** * * * ******* ** * **** consensus_5322#0 TTTGGTTAG--TAACGATTGTATAACTGCTTAGGTGG-CTCTATAGGTTGGTTGAACTGT 533 consensus_5322#1 GTTGGTTATGTNANCGATTGTATAACTGCTTAGGTGGTCTCTATAGTTTGGTTGAACTGT 348 ******* * *********************** ******** ************* consensus_5322#0 TAGC----AGTAAATCTGC-TACACA-AGTGTTGAAACGCGTAA-CGGAAAAA----CGC 582 consensus_5322#1 TANCCTATGTANAATCTGCGNACACATGGTGTTGTAACGCGTAAGCGGGAGNNGTCACAC 408 ** * ******* ***** ****** ********* *** * * * consensus_5322#0 TACGAAGCTCCACAGC-CGTAGCGTGAGTGAAAGAA-AGCCAT-CTGAC-GAC-ATACTC 637 consensus_5322#1 TACGAAGCTCCACAGTGCGTAGCGTGAGTGAAAGAGTAGCCATGCTGTCTGACTACACTC 468 *************** ****************** ****** *** * *** * **** consensus_5322#0 AAATCGGAGAACA--GTCCCA-CGAAGGGTAAAT---CGTCA-AATAACTATTACCTCG- 689 consensus_5322#1 NAATCGGAGTACTATGTCCCATCGAAGGNTGAATATCNGTCATAATGACTATTACNNTGC 528 ******** ** ****** ****** * *** **** *** ******** * consensus_5322#0 --AAAATAGTTAAAAACGACT-CCAAAGAAAAC-AGCTAGTGC-AGATATTAGCTGATCT 744 consensus_5322#1 GGAAAATAGTTAANTACGACTGCCGAAGTAAACTAGCTAGTGCTAGATATGAGCTGATNT 588 *********** ****** ** *** **** ********* ****** ******* * consensus_5322#0 AAGCCGATTTACGATAC-TAATCGAGC-ATCGAACACCGCATCAAGAGATAGCGGAAGGA 802 consensus_5322#1 AAGCCGATTTACGATACATAATCGAGCTGTCGAACACCGCATCAAGAGATAGCGGAAGGA 648 ***************** ********* ******************************* consensus_5322#0 CAAAAA-GTCCTACAA-AAGTGCAATCCGCACGACTCATG-ACTCACGACG-AGAACGCA 858 consensus_5322#1 CAAAAAAGTCCTACNATAAGTGCAATCCGCACGACTCATGTACTCACGACGTAGAACGCA 708 ****** ******* * *********************** ********** ******** consensus_5322#0 AATTCATCGCTGCAAGC-AAGATTAAGATCATCGCAG-ATTCATTCGAA-ATAACTACGA 915 consensus_5322#1 AATTCATCGCTGCAAGNCAAGATTAAGATCATCGCAGTATTCATTCGAATATAANTACGC 768 **************** ******************* *********** **** **** consensus_5322#0 GCCCGCTGCAAATTTCGCCTGGAGTAGGAAGCTCCTATAA-CAACATCTTACAAGGGAAC 974 consensus_5322#1 ACCCGCTGCAAATTTCGCCTGGAGTAGGAAGCTCCTGTANACAACATCTTACAAGGGAAC 828 *********************************** ** ******************* consensus_5322#0 GCGTCCGCTGAATCACCGAAAGT-TATTACAACAAAACAGGTATTCAAGTAAGCAAACTT 1033 consensus_5322#1 GCGTCCGCTGAATCACCGAAAGTCTATTACAACAAAACAG-TATTCAAGTAAGCAAACTT 887 *********************** **************** ******************* consensus_5322#0 GAATCCAGGTGAGTCGTTCCAATTATTAATCAATTAAAACTTACGAAATATTGCAACTCG 1093 consensus_5322#1 GAATCCAGTTAA--CCTCGGGATTCTGC-------------------------------- 913 ******** * * * * *** * consensus_5322#0 GAAATCATTTGATTTGTCCAAAATGTCGAAATATTTCGTTTCTAATCCAAACGGCCGCTG 1153 consensus_5322#1 ------------------------------------------------------------ consensus_5322#0 CCGCCTGTGTACGGAACAGGATGGAGACGTGCGGCATATAATCGCTG 1200 consensus_5322#1 ----------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||