These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5326#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 814 fasta sequence [CCGCGATCCGTCTCGCAATGCATCCTTTCGGTCCGTCGCTGCTGCTGCTGCTATCATTGGCTACGGTGAACGGTGCGTTCCTATCCAATCTAAACGCCACCTGCTTCCGGTGCATCTGCGACGCTTCCACCGGTTGCAGCACGTCCACCACCTGCAGACAGTCGTACTGTGGTCCGTTCTCCATCTCGCGCGCCTACTGGATGGATGCGGGCCGGCTGGTCCTGCCGGCGGACGAACCGACCCGCTGGGGCGCGTTCGAGGACTGTGCGAACGATTACGACTGCGCGACCGGCATCGTGACGCAGTACATGGAAAAGTATGGCACCGACTGCAACGGGGATGGGCTGGTGGACTGCGTCGACTATACGATGCTGCACGTGAACGGTGGGCCGCGCTGCCAGGGTGCGCTCGGTGGCACGTTCGCCAGCCGGTTCTACCAGTGTTTGCGCGAGGGTAAGCGTGATTCGAGTCGAACTTTCGGATAGTACTAGCCCTGAATGAATAGCCGGGGACCGAAACAAACTGTACGCAAGCCCCAAAGCGCTACTCGCGC-AATGGGTCGCTGGCAATTGCATTGCACTTCATAGTAGCTGGTATAATTGGAAACCTGTTCTGTTTTTGTTTCTGTCTCTGCAAGCCCAAACACTAACTAAGTTCCACAAAGCACACACATACATAATGCTTCACTCGATGTGCGAAAACAAGTAAACGTACCAAAATATATATGTGTGTATAATAATAATAATAATAATAAACAAACAAACAAACAAACCTAATGAGATAAATTCACGATCGCGCGATTGGAATAAATGTT] [+] EMBL BM616800 [CCGCGATCCGTCTCGCAATGCATCCTTTCGGTCCGTCGCTGCTGCTGCTGCTATCATTGGCTACGGTGAACGGTGCGTTCCTATCCAATCTAAACGCCACCTGCTTCCGGTGCATCTGCGACGCTTCCACCGGTTGCAGCACGTCCACCACCTGCAGACAGTCGTACTGTGGTCCGTTCTCCATCTCGCGCGCCTACTGGATGGATGCGGGCCGGCTGGTCCTGCCGGCGGACGAACCGACCCGCTGGGGCGCGTTCGAGGACTGTGCGAACGATTACGACTGCGCGACCGGCATCGTGACGCAGTACATGGAAAAGTATGGCACCGACTGCAACGGGGATGGGCTGGTGGACTGCGTCGACTATACGATGCTGCACGTGAACGGTGGGCCGCGCTGCCAGGGTGCGCTCGGTGGCACGTTCGCCAGCCGGTTCTACCAGTGTTTGCGCGAGGGTAAGCGTGATTCGAGTCGAACTTTCGGATAGTACTAGCCCTGAATGAATAGCCGGGGACCGAAACAAACTGTACGCAAGCCCCAAAGCGCTACTCGCGC AATGGGTCGCTGGCAATTGCATTGCACTTCATAGTAGCTGGTATAATTGGAAACCTGTTCTGTTTTTGTTTCTGTCTCTGCAAGCCCAAACACTAACTAAGTTCCACAAAGCACACACATACATAATGCTTCACTCGATG ] [+] EMBL BM614608 [ ccgGTCTCGCAATGCATCCTTTCGGTCCGTCGCTGCTGCTGCTGCTATCATTGGCTACGGTGAACGGTGCGTTCCTATCCAATCTAAACGCCACCTGCTTCCGGTGCATCTGCGACGCTTCCACCGGTTGCAGCACGTCCACCACCTGCAGACAGTCGTACTGTGGTCCGTTCTCCATCTCGCGCGCCTACTGGATGGATGCGGGCCGGCTGGTCCTGCCGGCGGACGAACCGACCCGCTGGGGCGCGTTCGAGGACTGTGCGAACGATTACGACTGCGCGACCGGCATCGTGACGCAGTACATGGAAAAGTATGGCACCGACTGCAACGGGGATGGGCTGGTGGACTGCGTCGACTATACGATGCTGCACGTGAACGGTGGGCCGCGCTGCCAGGGTGCGCTCGGTGGCACGTTCGCCAGCCGGTTCTACCAGTGTTTGCGCGAGGGTAAGCGTGATTCGAGTCGAACTTTCGGATAGTACTAGCCCTGAATGAATAGCCGGGGACCGAAACAAACTGTACGCAAGCCCCAAAGCGCTACTCGCGCAAATGGGTCGCTGGCAATTGC ] [+] EMBL BM592622 [ ccgGCGGGCCGGCTGGTCCTGCCGGCGGACGAACCGACCCGCTGGGGCGCGTTCGAGGACTGTGCGAACGATTACGACTGCGCGACCGGCATCGTGACGCAGTACATGGAAAAGTATGGCACCGACTGCAACGGGGATGGGCTGGTGGACTGCGTCGACTATACGATGCTGCACGTGAACGGTGGGCCGCGCTGCCAGGGTGCGCTCGGTGGCACGTTCGCCAGCCGGTTCTACCAGTGTTTGCGCGAGGGTAAGCGTGATTCGAGTCGAACTTTCGGATAGTACTAGCCCTGAATGAATAGCCGGGGACCGAAACAAACTGTACGCAAGCCCCAAAGCGCTACTCGCGC AATGGGTCGCTGGCAATTGCATTGCACTTCATAGTAGCTGGTATAATTGGAAACCTGTTCTGTTTTTGTTTCTGTCTCTGCAAGCCCAAACACTAACTAAGTTCAACAAAGCACACACATACATAATGCTTCACTCGATGTGCGAAAACAAGTAAACGTACCAAAATATATATGTGTGTATAATAATAATAATAATAATAAACAAACAAACAAACAAACCTAATGAGATAAATTCACGATCGCGCGATTGGAATAAATGTT] consensusID : consensus_5326#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 559 fasta sequence [CAGATCCCCGAGGTTAAATGCATCTTTCGGTCGTCGCTGCTGCTGCTGCTGCTGCTATCGTTCGCTACGGTGAACGGTGCGTTCCTATCCAAATCTAAACGCCACCTGCTTCCGGTGCATCTGCGACGCTTCCACCGGTTGCAGCACATCCACCACCTGCAGACAGTCGTACTGTGGTCCGTTCTCCATCTCGCGCGCCTACTGGATGGATGCGGGCCGGCTGGTCCTGCCGGCGGACGAACCGACCCGCTGGGGTGCGTTCGAGGACTGTGCGAACGATTACGACTGCGCAACCGGCATCGTGACGCAGTACATGGAAAAGTATGGCACCGACTGCAACGGGGATGGGCTGGTGGACTGCGTCGACTATACGATGCTGCACGTGAACGGTGGGCCGCGCTGCCAGGTGCGCTCGGTGGCACGTTCGCCAGCCGGTTCTACCAGTGTTTGCGCGAGGGTAAGCGTGATTCGAGTCGAACTTTCGGATAGTACTAGCCCTGAATGAATAGCCGGGGACCGAAACAAATGAACGCAAGCCCCAAAGCGCTACTCGCGCAAT] [+] EMBL AL931014 [CAGATCCCCGAGGTTAAATGCATCTTTCGGTCGTCGCTGCTGCTGCTGCTGCTGCTATCGTTCGCTACGGTGAACGGTGCGTTCCTATCCAAATCTAAACGCCACCTGCTTCCGGTGCATCTGCGACGCTTCCACCGGTTGCAGCACATCCACCACCTGCAGACAGTCGTACTGTGGTCCGTTCTCCATCTCGCGCGCCTACTGGATGGATGCGGGCCGGCTGGTCCTGCCGGCGGACGAACCGACCCGCTGGGGTGCGTTCGAGGACTGTGCGAACGATTACGACTGCGCAACCGGCATCGTGACGCAGTACATGGAAAAGTATGGCACCGACTGCAACGGGGATGGGCTGGTGGACTGCGTCGACTATACGATGCTGCACGTGAACGGTGGGCCGCGCTGCCAGGTGCGCTCGGTGGCACGTTCGCCAGCCGGTTCTACCAGTGTTTGCGCGAGGGTAAGCGTGATTCGAGTCGAACTTTCGGATAGTACTAGCCCTGAATGAATAGCCGGGGACCGAAACAAATGAACGCAAGCCCCAAAGCGCTACTCGCGCAAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5326#0 CCGCGATCCGTCTCGCAATGCATCCTTTCGGTC-----CGTCGCTGCTGCTGCTGCTATC 55 consensus_5326#1 CAGATCCCCGAGGTTAAATGCATC-TTTCGGTCGTCGCTGCTGCTGCTGCTGCTGCTATC 59 * * *** ******** ******** * ****************** consensus_5326#0 ATTGGCTACGGTGAACGGTGCGTTCCTATCCAA-TCTAAACGCCACCTGCTTCCGGTGCA 114 consensus_5326#1 GTTCGCTACGGTGAACGGTGCGTTCCTATCCAAATCTAAACGCCACCTGCTTCCGGTGCA 119 ** ***************************** ************************** consensus_5326#0 TCTGCGACGCTTCCACCGGTTGCAGCACGTCCACCACCTGCAGACAGTCGTACTGTGGTC 174 consensus_5326#1 TCTGCGACGCTTCCACCGGTTGCAGCACATCCACCACCTGCAGACAGTCGTACTGTGGTC 179 **************************** ******************************* consensus_5326#0 CGTTCTCCATCTCGCGCGCCTACTGGATGGATGCGGGCCGGCTGGTCCTGCCGGCGGACG 234 consensus_5326#1 CGTTCTCCATCTCGCGCGCCTACTGGATGGATGCGGGCCGGCTGGTCCTGCCGGCGGACG 239 ************************************************************ consensus_5326#0 AACCGACCCGCTGGGGCGCGTTCGAGGACTGTGCGAACGATTACGACTGCGCGACCGGCA 294 consensus_5326#1 AACCGACCCGCTGGGGTGCGTTCGAGGACTGTGCGAACGATTACGACTGCGCAACCGGCA 299 **************** *********************************** ******* consensus_5326#0 TCGTGACGCAGTACATGGAAAAGTATGGCACCGACTGCAACGGGGATGGGCTGGTGGACT 354 consensus_5326#1 TCGTGACGCAGTACATGGAAAAGTATGGCACCGACTGCAACGGGGATGGGCTGGTGGACT 359 ************************************************************ consensus_5326#0 GCGTCGACTATACGATGCTGCACGTGAACGGTGGGCCGCGCTGCCAGGGTGCGCTCGGTG 414 consensus_5326#1 GCGTCGACTATACGATGCTGCACGTGAACGGTGGGCCGCGCTGCCAGG-TGCGCTCGGTG 418 ************************************************ *********** consensus_5326#0 GCACGTTCGCCAGCCGGTTCTACCAGTGTTTGCGCGAGGGTAAGCGTGATTCGAGTCGAA 474 consensus_5326#1 GCACGTTCGCCAGCCGGTTCTACCAGTGTTTGCGCGAGGGTAAGCGTGATTCGAGTCGAA 478 ************************************************************ consensus_5326#0 CTTTCGGATAGTACTAGCCCTGAATGAATAGCCGGGGACCGAAACAAACTGTACGCAAGC 534 consensus_5326#1 CTTTCGGATAGTACTAGCCCTGAATGAATAGCCGGGGACCGAAACAAA-TGAACGCAAGC 537 ************************************************ ** ******** consensus_5326#0 CCCAAAGCGCTACTCGCGCAATGGGTCGCTGGCAATTGCATTGCACTTCATAGTAGCTGG 594 consensus_5326#1 CCCAAAGCGCTACTCGCGCAAT-------------------------------------- 559 ********************** consensus_5326#0 TATAATTGGAAACCTGTTCTGTTTTTGTTTCTGTCTCTGCAAGCCCAAACACTAACTAAG 654 consensus_5326#1 ------------------------------------------------------------ consensus_5326#0 TTCCACAAAGCACACACATACATAATGCTTCACTCGATGTGCGAAAACAAGTAAACGTAC 714 consensus_5326#1 ------------------------------------------------------------ consensus_5326#0 CAAAATATATATGTGTGTATAATAATAATAATAATAATAAACAAACAAACAAACAAACCT 774 consensus_5326#1 ------------------------------------------------------------ consensus_5326#0 AATGAGATAAATTCACGATCGCGCGATTGGAATAAATGTT 814 consensus_5326#1 ---------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||