cluster # 5328

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Anopheles gambiae
cluster # 5328 cluster # 5328 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5328#0 length = 567 sequences # 3

consensus_5328#1 length = 314 sequences # 1

consensusID : consensus_5328#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 567
fasta sequence

                              [GAGCTGCTTCAGTTCCGAGAAGTGCCGGTAAAACGGAAAAACGACCGCTAGCTGGAGTATTTAAGGCAGCTTCTTCGGACTGGCAGCGTTAGTGCACTTTTACCAGATACACAATGGACAAATACCTGCGGTTCTTCATCAAATTTCAGCCGTACATGATCGTCTTGTTTACGCTGCAGATGGTGATGGTGCTTACACCGGCGATGGCACAGAATGAAACGGACGGAATCGAAAATCTACGCTTCGGAGGCAAGGTGGCAGTAGTATTCGGCTTCAGCTGGGCCCTCGCTGTGGTAGCGCTGATCACGGCGATACATAAGGAAGACAAACGACTCATCTATCCGTACGCGTGCTTGTTTGGGTTTGAGCTTCTGCTTCTAGTACTGCGCGAATTTTACATCATTGCAGTCCATGGGTTTTTTATCGAAGTTTTAACAATCAAAATGTACGTCGCAGCGCTAGTTGTACCGTACGTTTGTGCAAGCCTGTTTGCACTGCACCGGCTGTTCACGGTGGACCCGATCGAAACCCGGCGTGACGANGGATTTGTGCGCTTCGATCGCAACG]

[+] EMBL BX622109             [GAGCTGCTTCAGTTCCGAGAAGTGCCGGTAAAACGAAAAAACGACCGCTAGCTGGAGTATTTAAGGCAGCTTCTTCGGACTGGCAGCGTTAGTGCACTTTTACCAGATACACAATGGACAAATACCTGCGGTTCTTCATCAAATTTCAGCCGTACATGATCGTCTTGTTTACGCTGCAGATGGTGATGGTGCTAACACCGGCGATGGCACAGAATGAAACGGACGGAATCGAAAATCTACGCTTCGGAGGCAAGGTGGCAGTAGTATTCGGCTTCAGCTGGGCCCTCGCTGTGGTAGCGCTGATCACGGCGATACATAAGGAAGACAAACGACTCATCTATCCGTACGCGTGCTTGTTTGGGTTTGAGCTTCTGCTTCTAGTACTGCGCGAATTTTACATCATTGCAGTCCATGGGTTTTTTATCGAAGTTTTAACAATCAAAATGTACGTCGCAGCGCTAGTTGTACCGTACGTTTGTGCAAGCCTGTTTGCACTGCACCGGCTGTTCACGGTGGACCCGATCGAAACCCGGCGTGACGANGGATTTGTGCGCTTCGATCGCAACG]
[+] EMBL BX611282             [         CAGTTCCGAGAAGTGCCGGTAAAACGGAAAAACGACCGCTAGCTGGAGTATTTAAGGCAGCTTCTTCGGACTGGCAGCGTTAGTGCACTTTTACCAGATACACAATGGACAAATACCTGCGGTTCTT ATCAAATTTCAGCCGTACATGATCGTCTTGTTTACGCTGCAGATGGTGATGGTGCTTACACCGGCGATGGCACAGAATGAAACGGACGGAATCGAAAATCTACGCTTCGGAGGCAAGGTGGCAGTAGTATTCGGCTTCAGCTGGGCCCTCGCTGTGGTAGCGCTGATCACGGCGATACATAAGGAAGACAAACGACTCATCTATCCGTACGCGTGCTTGTTTGGGTTTGAGCTTCTGCTTCTAGTACTGCGCGAATTTTACATCATTGCAGTCCATGGGTTTTTTATCGAAGTTTTAACAATCAAAATGTACGTCGCAGCGCTAGTTGTACCGTACGTTTGTGCAAGCCTGTTTGCACTGCACCGGCTGTTCACGGTGGACCCGATCGAAACCCGGCGTGACGAGGGATTTGT                 ]
[+] EMBL BX618137             [                   AAGTGCCGGTAAAACGGAAAAACGACCGCTAGCTGGAGTATTTAAGGCAGCTTCTTCGGACTGGCAGCGTTAGTGCACTTTTACCAGATACACAATGGACAAATACCTGCGGTTCTTCATCAAATTTCAGCCGTACATGATCGTCTTGTTTACGCTGCAGATGGTGATGGTGCTTACACCGGCGATGGCACAGAATGAAACGGACGGAATCGAAAATCTACGCTTCGGAGGCAAGGTGGCAGTAGTATTCGGCTTCAGCTGGGCCCTCGCTGTGGTAGCGCTGATCACGGCGATACATAAGGAAGACAAACGACTCATCTATCCGTACGCGTGCTTGTTTGGGTTTGAGCTTCTGCTTCTAGTACTGCGCGAATTTT                                                                                                                                                                           ]




>consensus_5328#0
GAGCTGCTTCAGTTCCGAGAAGTGCCGGTAAAACGGAAAAACGACCGCTAGCTGGAGTAT
TTAAGGCAGCTTCTTCGGACTGGCAGCGTTAGTGCACTTTTACCAGATACACAATGGACA
AATACCTGCGGTTCTTCATCAAATTTCAGCCGTACATGATCGTCTTGTTTACGCTGCAGA
TGGTGATGGTGCTTACACCGGCGATGGCACAGAATGAAACGGACGGAATCGAAAATCTAC
GCTTCGGAGGCAAGGTGGCAGTAGTATTCGGCTTCAGCTGGGCCCTCGCTGTGGTAGCGC
TGATCACGGCGATACATAAGGAAGACAAACGACTCATCTATCCGTACGCGTGCTTGTTTG
GGTTTGAGCTTCTGCTTCTAGTACTGCGCGAATTTTACATCATTGCAGTCCATGGGTTTT
TTATCGAAGTTTTAACAATCAAAATGTACGTCGCAGCGCTAGTTGTACCGTACGTTTGTG
CAAGCCTGTTTGCACTGCACCGGCTGTTCACGGTGGACCCGATCGAAACCCGGCGTGACG
ANGGATTTGTGCGCTTCGATCGCAACG

consensusID : consensus_5328#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 314
fasta sequence

                              [AGGCAGATCGCCGAGGTNACGCGATGAGCTGCTTCATTCCGAGAAGTGCGGTAAACGGAAAAAAACCGGGAAACCCCGCTTAGCCTTTGGGGGAAGGGGTTTTTAAAATTTTTTTATAACAACACCGGGGGCCAACGGGCCCCCTTTTTTCCCTTTTTTCCGGGGGGAAACCTTGTGGGCCAAGGCCGGTTAGTGGCAAACCCCCTTTTTTTTAAAACCCAAGGATACACAATGGACAAATACCTGCGGTTCTTCATCAAATTTCAGCCGTACATGATCGTCTTGTTTACGCTGCAGATGGTGATGGTGCTTAC]

[+] EMBL AL931058             [AGGCAGATCGCCGAGGTNACGCGATGAGCTGCTTCATTCCGAGAAGTGCGGTAAACGGAAAAAAACCGGGAAACCCCGCTTAGCCTTTGGGGGAAGGGGTTTTTAAAATTTTTTTATAACAACACCGGGGGCCAACGGGCCCCCTTTTTTCCCTTTTTTCCGGGGGGAAACCTTGTGGGCCAAGGCCGGTTAGTGGCAAACCCCCTTTTTTTTAAAACCCAAGGATACACAATGGACAAATACCTGCGGTTCTTCATCAAATTTCAGCCGTACATGATCGTCTTGTTTACGCTGCAGATGGTGATGGTGCTTAC]




>consensus_5328#1
AGGCAGATCGCCGAGGTNACGCGATGAGCTGCTTCATTCCGAGAAGTGCGGTAAACGGAA
AAAAACCGGGAAACCCCGCTTAGCCTTTGGGGGAAGGGGTTTTTAAAATTTTTTTATAAC
AACACCGGGGGCCAACGGGCCCCCTTTTTTCCCTTTTTTCCGGGGGGAAACCTTGTGGGC
CAAGGCCGGTTAGTGGCAAACCCCCTTTTTTTTAAAACCCAAGGATACACAATGGACAAA
TACCTGCGGTTCTTCATCAAATTTCAGCCGTACATGATCGTCTTGTTTACGCTGCAGATG
GTGATGGTGCTTAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5328#0      GAGCTGCTTCAGTTCCGAGAAGTGCCGGTAAAACGGAAAAACGACCGCTAGCTGGAGTAT 60
consensus_5328#1      ------------------------------------------------------------
                                                                                  

consensus_5328#0      TTAAGGCAGCTTCTTCGGACTGGCAGCGTTAGTGCACTTTTACCAGATACACAATGGACA 120
consensus_5328#1      ------------------------------------------------------------
                                                                                  

consensus_5328#0      AATACCTGCGGTTCTTCATCAAATTTCAGCCGTACATGATCGTCTTGTTTACGCTGCAGA 180
consensus_5328#1      -------------------------------AGGCA-GATCGCCGAGGTNACGCGATGAG 28
                                                        ** ***** *  * * ****      

consensus_5328#0      TGGTGATGGTGCTTACACCGGCGATGGCACAGAATGAAACGGACGGAATCGAAAATCTAC 240
consensus_5328#1      CTGCT-TCATTCCGAGAAGTGCGGTAA-ACGGAAAAAAACCGGGAAACCCCG----CTTA 82
                        *   *  * *  * *   *** *   ** ***  **** *    *  *      **  

consensus_5328#0      GCTTCGGAGGCAAGGTGGCAGTAGTATTCGGCTTCAGCTGGGCCCTCGCTGTGGTAGCGC 300
consensus_5328#1      GCCTTTGGGGGAAGGGGTTTTTAAAATTTTTTTATAACAACACCGGGGGCCAACGGGCCC 142
                      ** *  * ** **** *    **  ***    *  * *    **   *        ** *

consensus_5328#0      TGATCACGGCGATACATAAGGAAGACAAACGACTCATCTATCCGTACGCGTGCTTGTTTG 360
consensus_5328#1      CCTTTTTTCCCTTTTTTCCGGGGGGAAA---------CCTTGTGGGCCAAGGCCGGTTAG 193
                         *     *  *   *  **  *  **         *  *  *  *    **  *** *

consensus_5328#0      GGTTTGAGCTTCTGCTTCTAGTACTGCGCGAATTTTACATCATTGCAGTCCATGGGTTTT 420
consensus_5328#1      TGGCAAACCCCCTTTTTTTTAAAACCCAAGGATACACAATGGACAAATACCTGCGGTTCT 253
                       *    * *  **  ** *   *   *  * **     **      *  **   **** *

consensus_5328#0      TTATCGAAGTTTTAACAATCAAAATGTACGTCGCAGCGCTAGTTGTACCGTACGTTTGTG 480
consensus_5328#1      TCATC-AAATTTCAGC--------CGTACATGATCGTCTTGTTTACGCTGCA-GATGGTG 303
                      * *** ** *** * *         **** *    *   *  **   * * * * * ***

consensus_5328#0      CAAGCCTGTTTGCACTGCACCGGCTGTTCACGGTGGACCCGATCGAAACCCGGCGTGACG 540
consensus_5328#1      ATGG--TGCTTAC----------------------------------------------- 314
                         *  ** ** *                                               

consensus_5328#0      ANGGATTTGTGCGCTTCGATCGCAACG 567
consensus_5328#1      ---------------------------