These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5332#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 941 fasta sequence [AATGTTTGTGTAAGCAGCTAGGCCATAGGTTAGCGCACGATGTAAAATGAACACTTAGATAAGGAAAGGTAACTAGTACACTAAATTCAATGTTTGGGACGTAAGTAGAATGATAGGATTTTTTAAATGTAAACTGAATTACCAATTACACTCTCCCAATAAGCAAACAAGATCAGTTCTGGCTGCTTGGACTTACTGGTGACAAGCAGTAAACGTACAACAGGTGCAAGCGTGTGCTGGAAACAACACACAAGCAAAACACAGCGTCTCGGTCACTTCTGACCTTCGCATGCACTACCACACACACACACACACACACACACACACACACACACACACACACATAAACAGACAACACAAAGCACACTATTACACAGTAGATAAGGAGAAAAAATTGTACTAGCTGTAAGCT-AAATTATGTCAACTACTAGGCACCGAATGTATCTCAATCATTCCCAAATTTCCCTTCTCGTCGTTCTCCCGTTTTTTTTTTCTTAACCAACTGCGTACGCGCAAACACCGCCATAAAGCGTTAGGGTTAGAAGCGATGCGCGTGGGAGACGCCGAAGGAGACGACATGACAGCCAAAGTGTGCCAGCAGCAGGAGCAGAAGCAAGAAATCATTATGATCCAACCTGGGAATGGGATTAGTTGTTCGAAGCGAAGCAAGGAACGGAACGGCACTCGCTAGACGCAGGGCGGTATACAGTGTCACAAGAGTCTTATTCGTAAGAGGTACAAAACTACTACTATTATTACTACTACTACTACTCCTACTACTACAACAACTACTACTACTACTGTTAGAACTGGTGTGATGTTCTCAGTCGCATAAGTAGGGAAAGCGCCAGCGCGAGTCGTTGAAAGCCTACGTAAATGTTGCACAGTAGTGTGTTGGGGACAATGAAATCGATTACAGAGCTGAGGACAATGATCGACGT] [+] EMBL BX611365 [AATGTTTGTGTAAGCAGCTAGGCCATAGGTTAGCGCACGATGTAAAATGAACACTTAGATAAGGAAAGGTAACTAGTACACTAAATTCAATGTTTGGGACGTAAGTAGAATGATAGGATTTTTTAAATGTAAACTGAATTACCAATTACACTCTCCCAATAAGCAAACAAGATCAGTTCTGGCTGCTTGGACTTACTGGTGACAAGCAGTAAACGTACAACAGGTGCAAGCGTGTGCTGGAAACAACACACAAGCAAAACACAGCGTCTCGGTCACTTCTGACCTTCGCATGCACTACCACACACACACACACACACACACACACACACACACACACACACACATAAACAGACAACACAAAGCACACTATTACACAGTAGATAAGGAGAAAAAATTGTACTAGCTGTAAGCT AAATTATGTCAACTACTAGGCACCGAATGTATCTCAATCATTCCCAAATTTCCCTTCTCGTCGTTCTCCCGTTTTTTTTTTCTTAACCAACTGC ] [+] EMBL BX612707 [ AAGCAAAACACAGCGTCTCGGTCACTTCTGACCTTCGCATGCACTACCACACACACACACACACACACACACACACACACACACACACACACATAAACAGACAACACAAAGCACACTATTACACAGTAGATAAGGAGAAAAAATTGTACTAGCTGTAAGCT AAATTATGTCAACTACTAGGCACCGAATGTATCTCAATCATTCCCAAATTTCCCTTCTCGTCGTTCTCCCGTTTTTTTTTTCTTAACCAACTGCGTACGCGCAAACACCGCCATAAAGCGTTAGGGTTAGAAGCGATGCGCGTGGGAGACGCCGAAGGAGACGACATGACAGCCAAAGTGTGCCAGCAGCAGGAGCAGAAGCAAGAAATCATTATGATCCAACCTGGGAATGGGATTAGTTGTTCGAAGCGAAGCAAGGAACGGAACGGCACTCGCTAGACGCAGGGCGGTATACAGTGTCACAAGAGTCTTATTCGTAAGAGGTACAAAACTACTACTATTATTACTACTACTACTACTCCTACTACTACAACAACTACTACTACTACTGTTAGAACTGGTGTGATGTTCTCAGTCGCATAAGTAGGGAAAGCGCCAGCGCGAGTCGTTGAAAGCCTACGTAAATGTTGCACAGTAGTGTGTTGGGGACAATGAAATCGATTACAG ] [+] EMBL AL931208 [ tcgcccGAGGANAAATTGTACTAGCTGT AGCTAAAATTATGTCAACTACTAGGCACCGAATGTATCTCAATCATTCCCAAATTTCCCTTCTCGTCGTTCTCCCGTTTTTTTTTTCTTAACCAACTGCGTACGCGCAAACACCGCCATAAAGCGTTAGGGTTAGAAGCGATGCGCGTGGGAGACGCCGAAGGAGACGACATGACAGCCAAAGTGTGCCAGCAGCAGGAGCAGAAGCAAGAAATCATTATGATCCAACCTGGGAATGGGATTAGTTGTTCGAAGCGAAGCAAGGAACGGAACGGCACTCGCTAGACGCAGGGCGGTATACAGTGTCACAAGAGTCTTATTCGTAAGAGGTACAAAACTACTACTATTATTACTACTACTACTACTCCTACTACTACAACAACTACTACTACTACTGTTAGAACTGGTGTGATGTTCTCAGTCGCATAAGTAGGGAAAGCGCCAGCGCGAGTCGTTGAAAGCCTACGTAAATGTTGCACAGTAGTGTGTTGGGGACAATGAAATCGATTACAGAGCTGAGGACAATGATCGACGT] consensusID : consensus_5332#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 533 fasta sequence [CCGGCGATGCGCGTGGGAGACGCCGGAGGTGACAACATGACAGCCAAAGTGTGCCAGCAGCAAGAGCAGAAGCAAGAAATAATTATGATCCAACCTGGGAATGGGATTAGTTTATCGAAGCGAAGCAAAGAAGGGAACGGCACTCGCTAGACGCAGGGCGGTATAAAGTGTCACAAGAGTCTTATTCGTAAGAGGTACAAAACTACTACTATTATTATTACTACTACTACTCCTACTACTACAACTACTACTACTGTTAGAACTGGTGTGATTTTGTCAGTCGCATAAGTAGGGAAAGCGCCAGCGAGAGCCGTTGAAAGCCTACGAAAAAAGCAAATGATGCAAACAGTAGTGTGTTGGAGACAATGAAATCGATTACAGAGCTGAGGACAATGATCGGCGTAGAGTTGTGTGTAAGCCGTGGCAGGAGGAAAATTATTTTTATTTACTGTTCTGTCTTGTGGCACGTAAGTTGCGCGGAAGCAATTGATAGATCTTCAACTAAATAAAAGAATGAATCCATTTTTCAATGT] [+] EMBL BM588938 [CCGGCGATGCGCGTGGGAGACGCCGGAGGTGACAACATGACAGCCAAAGTGTGCCAGCAGCAAGAGCAGAAGCAAGAAATAATTATGATCCAACCTGGGAATGGGATTAGTTTATCGAAGCGAAGCAAAGAAGGGAACGGCACTCGCTAGACGCAGGGCGGTATAAAGTGTCACAAGAGTCTTATTCGTAAGAGGTACAAAACTACTACTATTATTATTACTACTACTACTCCTACTACTACAACTACTACTACTGTTAGAACTGGTGTGATTTTGTCAGTCGCATAAGTAGGGAAAGCGCCAGCGAGAGCCGTTGAAAGCCTACGAAAAAAGCAAATGATGCAAACAGTAGTGTGTTGGAGACAATGAAATCGATTACAGAGCTGAGGACAATGATCGGCGTAGAGTTGTGTGTAAGCCGTGGCAGGAGGAAAATTATTTTTATTTACTGTTCTGTCTTGTGGCACGTAAGTTGCGCGGAAGCAATTGATAGATCTTCAACTAAATAAAAGAATGAATCCATTTTTCAATGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5332#0 AATGTTTGTGTAAGCAGCTAGGCCATAGGTTAGCGCACGATGTAAAATGAACACTTAGAT 60 consensus_5332#1 ------------------------------------------------------------ consensus_5332#0 AAGGAAAGGTAACTAGTACACTAAATTCAATGTTTGGGACGTAAGTAGAATGATAGGATT 120 consensus_5332#1 ------------------------------------------------------------ consensus_5332#0 TTTTAAATGTAAACTGAATTACCAATTACACTCTCCCAATAAGCAAACAAGATCAGTTCT 180 consensus_5332#1 ------------------------------------------------------------ consensus_5332#0 GGCTGCTTGGACTTACTGGTGACAAGCAGTAAACGTACAACAGGTGCAAGCGTGTGCTGG 240 consensus_5332#1 ------------------------------------------------------------ consensus_5332#0 AAACAACACACAAGCAAAACACAGCGTCTCGGTCACTTCTGACCTTCGCATGCACTACCA 300 consensus_5332#1 ------------------------------------------------------------ consensus_5332#0 CACACACACACACACACACACACACACACACACACACACACACATAAACAGACAACACAA 360 consensus_5332#1 ------------------------------------------------------------ consensus_5332#0 AGCACACTATTACACAGTAGATAAGGAGAAAAAATTGTACTAGCTGTAAGCTAAATTATG 420 consensus_5332#1 ------------------------------------------------------------ consensus_5332#0 TCAACTACTAGGCACCGAATGTATCTCAATCATTCCCAAATTTCCCTTCTCGTCGTTCTC 480 consensus_5332#1 ------------------------------------------------------------ consensus_5332#0 CCGTTTTTTTTTTCTTAACCAACTGCGTACGCGCAAACACCGCCATAAAGCGTTAGGGTT 540 consensus_5332#1 ------------------------------------------------------------ consensus_5332#0 AGAAGCGATGCGCGTGGGAGACGCCGAAGGAGACGACATGACAGCCAAAGTGTGCCAGCA 600 consensus_5332#1 -CCGGCGATGCGCGTGGGAGACGCCGGAGGTGACAACATGACAGCCAAAGTGTGCCAGCA 59 ********************** *** *** ************************* consensus_5332#0 GCAGGAGCAGAAGCAAGAAATCATTATGATCCAACCTGGGAATGGGATTAGTTGTTCGAA 660 consensus_5332#1 GCAAGAGCAGAAGCAAGAAATAATTATGATCCAACCTGGGAATGGGATTAGTTTATCGAA 119 *** ***************** ******************************* ***** consensus_5332#0 GCGAAGCAAGGAACGGAACGGCACTCGCTAGACGCAGGGCGGTATACAGTGTCACAAGAG 720 consensus_5332#1 GCGAAGCAAAGAAGGGAACGGCACTCGCTAGACGCAGGGCGGTATAAAGTGTCACAAGAG 179 ********* *** ******************************** ************* consensus_5332#0 TCTTATTCGTAAGAGGTACAAAACTACTACTATTATTACTACTACTACTACTCCTACTAC 780 consensus_5332#1 TCTTATTCGTAAGAGGTACAAAACTACTACTATTATTATTACTACTACTACTCCTACTAC 239 ************************************** ********************* consensus_5332#0 TACAACAACTACTACTACTACTGTTAGAACTGGTGTGATGTTCTCAGTCGCATAAGTAGG 840 consensus_5332#1 TACAAC------TACTACTACTGTTAGAACTGGTGTGATTTTGTCAGTCGCATAAGTAGG 293 ****** *************************** ** ***************** consensus_5332#0 GAAAGCGCCAGCGCGAGTCGTTGAAAGCCTACG-------TAAATGTTGCA--CAGTAGT 891 consensus_5332#1 GAAAGCGCCAGCGAGAGCCGTTGAAAGCCTACGAAAAAAGCAAATGATGCAAACAGTAGT 353 ************* *** *************** ***** **** ******* consensus_5332#0 GTGTTGGGGACAATGAAATCGATTACAGAGCTGAGGACAATGATCGACGT---------- 941 consensus_5332#1 GTGTTGGAGACAATGAAATCGATTACAGAGCTGAGGACAATGATCGGCGTAGAGTTGTGT 413 ******* ************************************** *** consensus_5332#0 ------------------------------------------------------------ consensus_5332#1 GTAAGCCGTGGCAGGAGGAAAATTATTTTTATTTACTGTTCTGTCTTGTGGCACGTAAGT 473 consensus_5332#0 ------------------------------------------------------------ consensus_5332#1 TGCGCGGAAGCAATTGATAGATCTTCAACTAAATAAAAGAATGAATCCATTTTTCAATGT 533 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||