These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5333#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1037 fasta sequence [AGAATCGCCCGAGNTGAATCCTGATCGGTCATAGGGCCTTTGGACGACCCTGAGGCATCGACATCTACAATGCATTCTCGAGATGCAGGGCGGCGTCGATGTTCCTATACTTCAAAAATTGCCTANAAGCTCAGCTCAGAATCATCGGAGCAACTCTAGACGAACTAGGGATACTTCCTTTCAAACAATGCGTCTCGAGAATATATCCCAACACTATAACCTTTAAACAAATTCTGAGTCCCAGAGGACTTTGAGACATTGCAACACCCGAAGGATCGACAGAGATGTGAACTCTGACCGGTCCAGGACCTCTAGACGACAGCGGGCCCAAAGCAATTTCTGACAATTCCTTGTCAGGGGATTGATAGGAACAATAGTATTTGCACCGAAGTATCACAAACATTCTCGAGACACATTGCTAGAAATGGAGTTGTCCCTACAATGAGCTCCACAAACTACTAAGTTCTAGAGTACTTGGTGTACATGGAGTACTANACCTCAAAGACCACCAGGA-CCTAA-CGTCCGGAAAACTTTGGGCGTGAATCGTACTTTCTGNACAGCGTATATTGCGTATACGGCTTGCAGAATTTTTATTTAAAAACAAACACGA-CACTCCCAAAGTTCGCGTTACTGGGTTCTGTTTATATCAATATGTATATATTTC-TTTACAGTATCTCTTCCGTCTCAAAACAGTCCACAACATCGTGTTTCATCCCTCAAACCGAATCTCATTGGCCATTTGTTTTTTTTTTGTTTTGTTTTTTAGTACCAGATGATGAGAATACACATTTTAGTAATGTTTTTTTTTTTTTAATTAAGCATACTTCACATTCTTTGCTTGATTGGGAGATGGGAGGCACACAGCATAACAGCAAAAATATAGTAAAGCGCCATTAACAAGAGGAGCCTAGCTTTTAGTTAACGTAAAATACACTGTTCTGTTACAAAGAGGTTGTTCACCCCGCCCCGGGTCTATTTATAGAGAACGAATAGAACGAAAAAAGCACACACACACACAGCATACACACAATCTCCAG] [+] EMBL AL931225 [AGAATCGCCCGAGNTGAATCCTGATCGGTCATAGGGCCTTTGGACGACCCTGAGGCATCGACATCTACAATGCATTCTCGAGATGCAGGGCGGCGTCGATGTTCCTATACTTCAAAAATTGCCTANAAGCTCAGCTCAGAATCATCGGAGCAACTCTAGACGAACTAGGGATACTTCCTTTCAAACAATGCGTCTCGAGAATATATCCCAACACTATAACCTTTAAACAAATTCTGAGTCCCAGAGGACTTTGAGACATTGCAACACCCGAAGGATCGACAGAGATGTGAACTCTGACCGGTCCAGGACCTCTAGACGACAGCGGGCCCAAAGCAATTTCTGACAATTCCTTGTCAGGGGATTGATAGGAACAATAGTATTTGCACCGAAGTATCACAAACATTCTCGAGACACATTGCTAGAAATGGAGTTGTCCCTACAATGAGCTCCACAAACTACTAAGTTCTAGAGTACTTGGTGTACATGGAGTACTANACCTCAAAGACCACCAGGA CCTAA CGTCCGGAAAACTTTGGGCGTGAATCGTACTTTCTGNACAGCGTATATTGCGTATACGGCTTGCAGAATTTTTATTTAAAAACAAACACGA CACTCCCAAAGTTCGCGTTACTGGGTTCTGGGTATATCCACATGTATATATTTCTTTTACAGGATCTC ] [+] EMBL BX609613 [ AGACATTGCAACACCCGAAGGATCGACAGAGATGTGAACTCTGACCGGTCCAGGACCTCTAGACGACAGCGGG CCAAAGCAATTTCTGACAATTCCTTGTCA GGGATTGATAGGAACAATAGTATTTGCACCGAAGTATCACAAACATTCTCGAGACACATTGCTAGAAATGGA TTGTCCCTACAATGAGCTCCACAAACTACTAAGTTCTAGAGTACTTGGTGTACATGGAGTACTACACCTCAAAGACCACCAGGACCCTAACCGTCCGGAAAACTTTGGGCGTGAATCGTACTTTCTGTACAGC TATATTGC TATACGGCTTGCAGAATTTTTATTTAAAAA AAACACGACCACT CCAAAGTTCGC TTACT GCTTCTGTTTATATCAATATGTATATATTTC TTTACAGTATCTCTTCCGTCTCAAAACAGTCCACAACATCGTGTTTCATCCCTCAAACCGAATCTCATTGGCCATTTGTTTTTTTTTTGTTTTGTTTTTTAGTACCAGATGATGAGAATACACATTTTAGTAATGTTTTTTTTTTTTTA ] [-] EMBL BX610941 [ TGTTTATATCAATATGTATATATTTC TTTACAGTATCTCTTCCGTCTCAAAACAGTCCACAACATCGTGTTTCATCCCTCAAACCGAATCTCATTGGCCATTTGTTTTTTTTTTGTTTTGTTTTTTAGTACCAGATGATGAGAATACACATTTCAGTAATGTTTTTTTTTTTTTAATTAAGCATACTTCACATTCTTTGCTTGATTGGGAGATGGGAGGCACACAGCATAACAGCAAAAATATAGTAAAGCGCCATTAACAAGAGGAGCCTAGCTTTTAGTTAACGTAAAATACACTGTTCTGTTACAAAGAGGTTGTTCACCCCGCCCCGGGTCTATTTATAGAGAACGAATAGAACGAAAAAAGCACACACACACACAGCATACACACAATCTCCAG] consensusID : consensus_5333#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 575 fasta sequence [TTCTGTTTATATCAATATGTATATATTTCTTTACAGTATCTCTTCCGTCTCAAAACAGTCCACAACATCGTGTTTCATCCCTCAAACCGAATCTCATTGGCCATTTGTTTTTTTTTTGTTTTGTTTTTTAGTACCAGATGATGAGAATACACATTTCAGTAATGTTTTTTTTTTTTTAATTAAGCATACTTCACATTCTTTGCTTGATTGGGAGATGGGAGGCACACAGCATAACAGCAAAAATATAGTAAAGCGCCATTAACGAGAGGAGCCTAGCTTTTAGTTAACGTAAAATACACTGTTCTGTTACAAAGAGGTTGTTTTGTTTGTTTGTTTGTTTGTGTTTTGTCCCAATCCTTCGTTCTCCACTTCCATTTGTCAATTCATGTCACTCGCTCTCTCTCGCTTTCTGTCTCTATTTTGTTTTTTTTTGTTCTTCCCTTTCTCGCTCTTCGCGAATGTGTGTCTGTGTGTGTTTGTGTGTTTTGTAACAATTGATTGATTTTGCTGTTGCAGTTGTTATGTTGTTTTTTTTTTACGTTTATATTCGTCGATTTTAATTCGATTTATTACAT] [-] EMBL BX608226 [TTCTGTTTATATCAATATGTATATATTTCTTTACAGTATCTCTTCCGTCTCAAAACAGTCCACAACATCGTGTTTCATCCCTCAAACCGAATCTCATTGGCCATTTGTTTTTTTTTTGTTTTGTTTTTTAGTACCAGATGATGAGAATACACATTTCAGTAATGTTTTTTTTTTTTTAATTAAGCATACTTCACATTCTTTGCTTGATTGGGAGATGGGAGGCACACAGCATAACAGCAAAAATATAGTAAAGCGCCATTAACGAGAGGAGCCTAGCTTTTAGTTAACGTAAAATACACTGTTCTGTTACAAAGAGGTTGTTTTGTTTGTTTGTTTGTTTGTGTTTTGTCCCAATCCTTCGTTCTCCACTTCCATTTGTCAATTCATGTCACTCGCTCTCTCTCGCTTTCTGTCTCTATTTTGTTTTTTTTTGTTCTTCCCTTTCTCGCTCTTCGCGAATGTGTGTCTGTGTGTGTTTGTGTGTTTTGTAACAATTGATTGATTTTGCTGTTGCAGTTGTTATGTTGTTTTTTTTTTACGTTTATATTCGTCGATTTTAATTCGATTTATTACAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5333#0 AGAATCGCCCGAGNTGAATCCTGATCGGTCATAGGGCCTTTGGACGACCCTGAGGCATCG 60 consensus_5333#1 ------------------------------------------------------------ consensus_5333#0 ACATCTACAATGCATTCTCGAGATGCAGGGCGGCGTCGATGTTCCTATACTTCAAAAATT 120 consensus_5333#1 ------------------------------------------------------------ consensus_5333#0 GCCTANAAGCTCAGCTCAGAATCATCGGAGCAACTCTAGACGAACTAGGGATACTTCCTT 180 consensus_5333#1 ------------------------------------------------------------ consensus_5333#0 TCAAACAATGCGTCTCGAGAATATATCCCAACACTATAACCTTTAAACAAATTCTGAGTC 240 consensus_5333#1 ------------------------------------------------------------ consensus_5333#0 CCAGAGGACTTTGAGACATTGCAACACCCGAAGGATCGACAGAGATGTGAACTCTGACCG 300 consensus_5333#1 ------------------------------------------------------------ consensus_5333#0 GTCCAGGACCTCTAGACGACAGCGGGCCCAAAGCAATTTCTGACAATTCCTTGTCAGGGG 360 consensus_5333#1 ------------------------------------------------------------ consensus_5333#0 ATTGATAGGAACAATAGTATTTGCACCGAAGTATCACAAACATTCTCGAGACACATTGCT 420 consensus_5333#1 ------------------------------------------------------------ consensus_5333#0 AGAAATGGAGTTGTCCCTACAATGAGCTCCACAAACTACTAAGTTCTAGAGTACTTGGTG 480 consensus_5333#1 ------------------------------------------------------------ consensus_5333#0 TACATGGAGTACTANACCTCAAAGACCACCAGGACCTAACGTCCGGAAAACTTTGGGCGT 540 consensus_5333#1 ------------------------------------------------------------ consensus_5333#0 GAATCGTACTTTCTGNACAGCGTATATTGCGTATACGGCTTGCAGAATTTTTATTTAAAA 600 consensus_5333#1 ------------------------------------------------------------ consensus_5333#0 ACAAACACGACACTCCCAAAGTTCGCGTTACTGGGTTCTGTTTATATCAATATGTATATA 660 consensus_5333#1 -----------------------------------TTCTGTTTATATCAATATGTATATA 25 ************************* consensus_5333#0 TTTCTTTACAGTATCTCTTCCGTCTCAAAACAGTCCACAACATCGTGTTTCATCCCTCAA 720 consensus_5333#1 TTTCTTTACAGTATCTCTTCCGTCTCAAAACAGTCCACAACATCGTGTTTCATCCCTCAA 85 ************************************************************ consensus_5333#0 ACCGAATCTCATTGGCCATTTGTTTTTTTTTTGTTTTGTTTTTTAGTACCAGATGATGAG 780 consensus_5333#1 ACCGAATCTCATTGGCCATTTGTTTTTTTTTTGTTTTGTTTTTTAGTACCAGATGATGAG 145 ************************************************************ consensus_5333#0 AATACACATTTTAGTAATGTTTTTTTTTTTTTAATTAAGCATACTTCACATTCTTTGCTT 840 consensus_5333#1 AATACACATTTCAGTAATGTTTTTTTTTTTTTAATTAAGCATACTTCACATTCTTTGCTT 205 *********** ************************************************ consensus_5333#0 GATTGGGAGATGGGAGGCACACAGCATAACAGCAAAAATATAGTAAAGCGCCATTAACAA 900 consensus_5333#1 GATTGGGAGATGGGAGGCACACAGCATAACAGCAAAAATATAGTAAAGCGCCATTAACGA 265 ********************************************************** * consensus_5333#0 GAGGAGCCTAGCTTTTAGTTAACGTAAAATACACTGTTCTGTTACAAAGAGGTTGTTCAC 960 consensus_5333#1 GAGGAGCCTAGCTTTTAGTTAACGTAAAATACACTGTTCTGTTACAAAGAGGTTGTTTTG 325 ********************************************************* consensus_5333#0 CCCGCCC---CGGGTCTATTTATAGAGAACGAATAGAACGAAAAAAGCACACACACACAC 1017 consensus_5333#1 TTTGTTTGTTTGTTTGTGTTTTGTCCCAATCCTTCGTTCTCCACTTCCATTTGTCAATTC 385 * * * * *** ** * * * * ** * * consensus_5333#0 AGCATACACACAATCTCCAG---------------------------------------- 1037 consensus_5333#1 ATGTCACTCGCTCTCTCTCGCTTTCTGTCTCTATTTTGTTTTTTTTTGTTCTTCCCTTTC 445 * ** * * **** * consensus_5333#0 ------------------------------------------------------------ consensus_5333#1 TCGCTCTTCGCGAATGTGTGTCTGTGTGTGTTTGTGTGTTTTGTAACAATTGATTGATTT 505 consensus_5333#0 ------------------------------------------------------------ consensus_5333#1 TGCTGTTGCAGTTGTTATGTTGTTTTTTTTTTACGTTTATATTCGTCGATTTTAATTCGA 565 consensus_5333#0 ---------- consensus_5333#1 TTTATTACAT 575 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||