|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5336#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1192 fasta sequence
[TCCAGTATGCGATCACAGTGTAGCAGTTTGCTCGTGCCGCTCGTGTTGGGTGTTGCATCCGGTGAGCTAGTACGGTACGACAACTTCCACCTGTTTCGGGTTGCGATCACAGATCAAGAGCAGTTGAAGGTTCTGCAGAATGTGGAGCTTCAGAATGATCAGTTCATATTTCTAGACTCTCCCACACAAGTGGGTATGAATGTGAGTGTGCTCGTTTCTCCACGAAAGCTGCTGGACTACCTTCAACTTGCGAAGAATGCGCACCTTTCCTCACACTTGGCCACAACCAACTTCCAAGCGATTCTGGATGCGGAAAACCCTCCCGCAAAGAACAAACGCAGCGATGAGTTCGGTTGGGAAGAGTATCAAACGCTCGATTCCATTTACAACTGGATCGATGAATTGGCTGTTACGTACTCTTCCATTCTTACCGTCCAGAGCATTGGACAGTCGTACGAGGGTCGTGAGATGAAGGTTGTGAAGCTGTCCCATCAGGCAGGAAATCCTGGCATCTTTATTGAGTCGAACATTCACGCTCGTGAGTTGATCACCTCCGCTACGACCACGTGGCTGTTGAATGAGCTGCTCACGTCCTCCGATCCGGCAGTACAGGAACTGCTC-ACGT-CCTACGATTGGTACATTCTGCCCGTCGCCAATCCGGACGGATTCCACTACACCAAGACGACGAATCGTTTGTGGC-GCAAGAATC-GCTACCCCCACAACATCCTCTGCCCGGGG-GTTGATCTGAATCGTAACTTCCCGTACCACTGGATG-GAAG-GTGGTGCCTCGCAG-GTAGC-GTGCAATGATATCTACGCGGGACC-GTCTCCC-GCCTCGGAAGTGGAAACACGTAACATGATGGAGTACTACGAAAC-GATCGTC-GATC-GGATTGAGCTGCATCTGCAGTTCCACTCGTACGGGCAGTACATCCTGCTGCCTTACGGTTACCAAGATGCCTGACTATCCGGACAACTATTNCCGATCAGCTTGAAATAGCTGGAAGCTGTGCTTGCGATCGGGTTTTCCAAGCTGTTACAACACACCTGTACACCTACGGTACCATTTGCGGACTTGTGCTGGATGTCGAATCCGGATCGACCAACGATTGGGCGCACGGTATCACAAAAACCCGGTGTCCGATGTGCGTTCGAGTTCCGCGATAATGGTGCNTACGGGTTTGTGNATGNCCGCGGGA]
[+] EMBL CNS0967Z [TCCAGTATGCGATCACAGTGTAGCAGTTTGCTCGTGCCGCTCGTGTTGGGTGTTGCATCCGGTGAGCTAGTACGGTACGACAACTTCCACCTGTTTCGGGTTGCGATCACAGATCAAGAGCAGTTGAAGGTTCTGCAGAATGTGGAGCTTCAGAATGATCAGTTCATATTTCTAGACTCTCCCACACAAGTGGGTATGAATGTGAGTGTGCTCGTTTCTCCACGAAAGCTGCTGGACTACCTTCAACTTGCGAAGAATGCGCACCTTTCCTCACACTTGGCCACAACCAACTTCCAAGCGATTCTGGATGCGGAAAACCCTCCCGCAAAGAACAAACGCAGCGATGAGTTCGGTTGGGAAGAGTATCAAACGCTCGATTCCATTTACAACTGGATCGATGAATTGGCTGTTACGTACTCTTCCATTCTTACCGTCCAGAGCATTGGACAGTCGTACGAGGGTCGTGAGATGAAGGTTGTGAAGCTGTCCCATCAGGCAGGAAATCCTGGCATCTTTATTGAGTCGAACATTCACGCTCGTGAGTTGATCACCTCCGCTACGACCACGTGGCTGTTGAATGAGCTGCTCACGTCCTCCGATCCGGCAGTACAGGAACTGCTC ACGT CCTACGATTGGTACATTCTGCCCGTCGCCAATCCGGACGGATTCCACTACACCAAGACGACGAATCGTTTGTGGC GCAAGAATC GCTACCCCCACAACATCCTCTGCCCGGGG GTTGATCTGAATCGTAACTTCCCGTACCACTGGATG GAAG GTGGTGCCTCGCAG GTAGC GTGCAATGATATCTACGCGGGACC GTCTCCC GCCTCGGAAGTGGAAACACGTAACATGATGGAGTACTACGAAAC GATCGTC GATC GGATTGAGCTGCATCTGCAGTT ]
[+] EMBL AL931271 [ aGAATTGCCCGAGGTGTCTACGATTGGTACATTCTGCCCGTCGCCAATCCGGACGGATTCCACTACACCAAGACGACGAATCGTTTGTGGCTGCAAGAATCTGCTACCCCCACAACATCCTCTGCCCGGGGTGTTGATCTGAATCGTAACTTCCCGTACCACTGGATGNGAAGTGTGGTGCCTCGCAGTGTAGCTGTGCAATGATATCTACGCGGGACCTGTCTCCCTGCCTCGGAAGTGGAAACACGTAACATGATGGAGTACTACGAAACTGATCGTCTGATCTGGATTGAGCTGCATCTGCAGTTCCACTCGTACGGGCAGTACATCCTGCTGCCTTACGGTTACCAAGATGCCTGACTATCCGGACAACTATTNCCGATCAGCTTGAAATAGCTGGAAGCTGTGCTTGCGATCGGGTTTTCCAAGCTGTTACAACACACCTGTACACCTACGGTACCATTTGCGGACTTGTGCTGGATGTCGAATCCGGATCGACCAACGATTGGGCGCACGGTATCACAAAAACCCGGTGTCCGATGTGCGTTCGAGTTCCGCGATAATGGTGCNTACGGGTTTGTGNATGNCCGCGGGA]
consensusID : consensus_5336#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 613 fasta sequence
[CCGCGGACGCGTGGGGTGTAGCAGTTTTCTCGTGCTGCTCGTGCTGGGTGTTGCATCCGGTGAGCTAGTACGGTACGACAACTTCCACCTGTTTCGGGTTGCGATCAAAGATCAAGAGCAGTTAAAGGTTCTGCAGAATGTGGAGCTTCAGAATGATCAGTTCATATTTCTAGACTATCCCACACAAGTGGGTATGAATGTGAGTGTGCTCGTTTCTCCACGAAAGCTGCTGGACTACCTTCAACTTGCGAAGAATGTGCATCTTTCCTCACACTTGGCCACAACCAACTTCCAAGCGATTCTGGATGCGGAAAACCCTCCCGCAAAGAACAAACGCAGCGATGAGTTCGGTTGGGAAGAGTATCAAACACTCGATGCCATTTACAACTGGATCGATGAATTGGCTGTTAAGTACTCCTCCATTCTTACCGTCCAGAGCATTGGGCAATCGTACGAAGGTCGTGAGATGAAGGTGGTGAAGCTGTCCCATCAGGCAGGAAATCCTGGCATCTTTATCGAGTCGAACATTCACGCTCGTGAGTGGATCACCTCCGCTACGACCACGTGGCTGTTGAATGAACTGCTCACGTCCTCCGATCCGGCAGTACAGGAA]
[+] EMBL BM610495 [CCGCGGACGCGTGGGGTGTAGCAGTTTTCTCGTGCTGCTCGTGCTGGGTGTTGCATCCGGTGAGCTAGTACGGTACGACAACTTCCACCTGTTTCGGGTTGCGATCAAAGATCAAGAGCAGTTAAAGGTTCTGCAGAATGTGGAGCTTCAGAATGATCAGTTCATATTTCTAGACTATCCCACACAAGTGGGTATGAATGTGAGTGTGCTCGTTTCTCCACGAAAGCTGCTGGACTACCTTCAACTTGCGAAGAATGTGCATCTTTCCTCACACTTGGCCACAACCAACTTCCAAGCGATTCTGGATGCGGAAAACCCTCCCGCAAAGAACAAACGCAGCGATGAGTTCGGTTGGGAAGAGTATCAAACACTCGATGCCATTTACAACTGGATCGATGAATTGGCTGTTAAGTACTCCTCCATTCTTACCGTCCAGAGCATTGGGCAATCGTACGAAGGTCGTGAGATGAAGGTGGTGAAGCTGTCCCATCAGGCAGGAAATCCTGGCATCTTTATCGAGTCGAACATTCACGCTCGTGAGTGGATCACCTCCGCTACGACCACGTGGCTGTTGAATGAACTGCTCACGTCCTCCGATCCGGCAGTACAGGAA]
consensusID : consensus_5336#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 240 fasta sequence
[ATCGTCGATCGGATTGTGCTGCCTCTGCAGTTCCACTCGTACGGGCAGTAAATCCTGCTGCCTTACGGTTACCAAGATGCCGACTATCCGGACAACTATTCCGATCAGCTTGAAATAGCGGAAGCGGCTGCGATCGGGTTTTCCAAGCGTTACAACACACCGTACACTACGGTACCATTGCGGTTGTGCTGTTTGTCGACTCCGGATCGACCACCGATTGGGCGCACGGTTATCACAAAA]
[-] EMBL CNS09680 [ATCGTCGATCGGATTGTGCTGCCTCTGCAGTTCCACTCGTACGGGCAGTAAATCCTGCTGCCTTACGGTTACCAAGATGCCGACTATCCGGACAACTATTCCGATCAGCTTGAAATAGCGGAAGCGGCTGCGATCGGGTTTTCCAAGCGTTACAACACACCGTACACTACGGTACCATTGCGGTTGTGCTGTTTGTCGACTCCGGATCGACCACCGATTGGGCGCACGGTTATCACAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5336#0 TCCAGTATGCGATCACAGTGTAGCAGTTTGCTCGTGCCGCTCGTGTTGGGTGTTGCATCC 60
consensus_5336#2 ------------------------------------------------------------
consensus_5336#1 ------------------------------------------------------------
consensus_5336#0 GGTGAGCTAGTACGGTACGACAACTTCCACCTGTTTCGGGTTGCGATCACAGATCAAGAG 120
consensus_5336#2 ------------------------------------------------------------
consensus_5336#1 ------------------------------------------------------------
consensus_5336#0 CAGTTGAAGGTTCTGCAGAATGTGGAGCTTCAGAATGATCAGTTCATATTTCTAGACTCT 180
consensus_5336#2 ------------------------------------------------------------
consensus_5336#1 ------------------------------------------------------------
consensus_5336#0 CCCACACAAGTGGGTATGAATGTGAGTGTGCTCGTTTCTCCACGAAAGCTGCTGGACTAC 240
consensus_5336#2 ------------------------------------------------------------
consensus_5336#1 ------------------------------------------------------------
consensus_5336#0 CTTCAACTTGCGAAGAATGCGCACCTTTCCTCACACTTGGCCACAACCAACTTCCAAGCG 300
consensus_5336#2 ------------------------------------------------------------
consensus_5336#1 ------------------------------------------------------------
consensus_5336#0 ATTCTGGATGCGGAAAACCCTCCCGCAAAGAACAAACGCAGCGATGAGTTCGGTTGGGAA 360
consensus_5336#2 ------------------------------------------------------------
consensus_5336#1 ------------------------------------------------------------
consensus_5336#0 GAGTATCAAACGCTCGATTCCATTTACAACTGGATCGATGAATTGGCTGTTACGTACTCT 420
consensus_5336#2 ------------------------------------------------------------
consensus_5336#1 ------------------------------------------------------------
consensus_5336#0 TCCATTCTTACCGTCCAGAGCATTGGACAGTCGTACGAGGGTCGTGAGATGAAGGTTGTG 480
consensus_5336#2 ------------------------------------------------------------
consensus_5336#1 ------------------------------------------------------------
consensus_5336#0 AAGCTGTCCCATCAGGCAGGAAATCCTGGCATCTTTATTGAGTCGAACATTCACGCTCGT 540
consensus_5336#2 ------------------------------------------------------------
consensus_5336#1 ------------------------------------------------------------
consensus_5336#0 GAGTTGATCACCTCCGCTACGACCACGTGGCTGTTGAATGAGCTGCTCACGTCCTCCGAT 600
consensus_5336#2 ------------------------------------------------------------
consensus_5336#1 ------------------------------------------------------------
consensus_5336#0 CCGGCAGTACAGGAACTGCTCACGTCCTACGATTGGTACATTCTGCCCGTCGCCAATCCG 660
consensus_5336#2 ------------------------------------------------------------
consensus_5336#1 ------------------------------------------------------------
consensus_5336#0 GACGGATTCCACTACACCAAGACGACGAATCGTTTGTGGCGCAAGAATCGCTACCCCCAC 720
consensus_5336#2 ------------------------------------------------------------
consensus_5336#1 ------------------------------------------------------------
consensus_5336#0 AACATCCTCTGCCCGGGGGTTGATCTGAATCGTAACTTCCCGTACCACTGGATGGAAGGT 780
consensus_5336#2 ------------------------------------------------------------
consensus_5336#1 ------------------------------------------------------------
consensus_5336#0 GGTGCCTCGCAGGTAGCGTGCAATGATATCTACGCGGGACCGTCTCCCGCCTCGGAAGTG 840
consensus_5336#2 ------------------------------------------------------------
consensus_5336#1 ------------------------------------------------------------
consensus_5336#0 GAAACACGTAACATGATGGAGTACTACGAAACGATCGTCGATCGGATTGAGCTGCATCTG 900
consensus_5336#2 ---------------------------------ATCGTCGATCGGATTGTGCTGCCTCTG 27
consensus_5336#1 -------------------------------CCGCGGACGCGTGGGGTGTAGCAGTTTTC 29
* ** ** ** * *
consensus_5336#0 CAGTTCCACTCGTAC-GGGCAGTACATCCTGCTGCCT--TACGGTTACCAAGATGCCTGA 957
consensus_5336#2 CAGTTCCACTCGTAC-GGGCAGTAAATCCTGCTGCCT--TACGGTTACCAAGATGCC-GA 83
consensus_5336#1 TCGTGCTGCTCGTGCTGGGTGTTGCATCCGGTGAGCTAGTACGGT-ACGACAACTTCCAC 88
** * ***** * *** * **** * ** ****** ** * * *
consensus_5336#0 CTATC-CGGACAACTAT------TNCCGATCAGCTTGAAATA--GCTGGAAGCTGTGCTT 1008
consensus_5336#2 CTATC-CGGACAACTAT------TCC-GATCAGCTTGAAATA--GC-GGAAGC---GGCT 129
consensus_5336#1 CTGTTTCGGGTTGCGATCAAAGATCAAGAGCAGTTAAAGGTTCTGCAGAATGTGGAGCTT 148
** * *** * ** * ** *** * * * ** * * * * *
consensus_5336#0 ----GCGATCGGGT----TTTCCAAGCTGTTACA-ACACACCTGTACACCTACGGTACCA 1059
consensus_5336#2 ----GCGATCGGGT----TTTCCAAGC-GTTACA-ACACACC-GTACAC-TACGGTACCA 177
consensus_5336#1 CAGAATGATCAGTTCATATTTCTAGACTATCCCACACAAGTGGGTATGAATGTGAGTGTG 208
**** * * **** * * * ** *** *** * *
consensus_5336#0 TTTGCGGACTTGTGCTGGATGTCGAATCCGGATCGACCAACGATTGGGCGCACGGT-ATC 1118
consensus_5336#2 TT-GCGG--TTGTGCTGTTTGTCGACTCCGGATCGACCACCGATTGGGCGCACGGTTATC 234
consensus_5336#1 CTCGTTTCTCCACGAAAGCTGCTGGACTACCTTCAACTTGCGAA-GAATGTGCATCTTTC 267
* * * ** * ** ** *** * * * **
consensus_5336#0 ACAAAAACCCGGTGTCCGATGTGCGTTCGAGTTCCGCGATAATGGTGCNTACGGGTTTGT 1178
consensus_5336#2 ACAAAA------------------------------------------------------ 240
consensus_5336#1 CTCACACTTGGCCACAACCAACTTCCAAGCGATTCTGGATGCGGAAAACCCTCCCGCAAA 327
* *
consensus_5336#0 GNATGNCCGCGGGA---------------------------------------------- 1192
consensus_5336#2 ------------------------------------------------------------
consensus_5336#1 GAACAAACGCAGCGATGAGTTCGGTTGGGAAGAGTATCAAACACTCGATGCCATTTACAA 387
consensus_5336#0 ------------------------------------------------------------
consensus_5336#2 ------------------------------------------------------------
consensus_5336#1 CTGGATCGATGAATTGGCTGTTAAGTACTCCTCCATTCTTACCGTCCAGAGCATTGGGCA 447
consensus_5336#0 ------------------------------------------------------------
consensus_5336#2 ------------------------------------------------------------
consensus_5336#1 ATCGTACGAAGGTCGTGAGATGAAGGTGGTGAAGCTGTCCCATCAGGCAGGAAATCCTGG 507
consensus_5336#0 ------------------------------------------------------------
consensus_5336#2 ------------------------------------------------------------
consensus_5336#1 CATCTTTATCGAGTCGAACATTCACGCTCGTGAGTGGATCACCTCCGCTACGACCACGTG 567
consensus_5336#0 ----------------------------------------------
consensus_5336#2 ----------------------------------------------
consensus_5336#1 GCTGTTGAATGAACTGCTCACGTCCTCCGATCCGGCAGTACAGGAA 613
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||