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Anopheles gambiae
cluster # 5340 cluster # 5340       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5340#0 length = 926 sequences # 1  
consensus_5340#1 length = 681 sequences # 3  

consensusID : consensus_5340#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 926
fasta sequence
                              [CAGAATTCCCTGANGTTTCCAANGCCATCGTCACGGTGTGCAGCATANCAGTGAGNGCCTGTGTGCTATGCCTGTCAAGAAAGCTGTGTGAAATACTGCTCGAACTGCATCAAACCTGGTTCTGCTGATGCTGCATAAGTGACTGCACCTGTGGGAAACCTGTTACCCAGCTCTGTTACGCAGGCAATGTGGACCTGTGCTGCTACCTATCAGTACCTGTGCTGACCTGATGCTGAAGCCTTACATCATCTGGTGTGCTTAAGCTTGTGCCTGAGTGTGTGAGTGTGTGATGTGCTCACGGGCAATGTGCAGCTTGCGCCGTGTCGACATACTTGGAGTGATACTTGGAGAAAGCTTGAGTCCCGGCATTGACGTTGGACAAATTTGAGTGGTTGCGTTTATTATTGGGCNGTCGGGTACTTGGCTGACTTGAAAGCGTTGGTATACAATTGCTTGAGTGACGTGTGCTCTTGCTAACTGAACCTGTACCTTGGACTGTACAAAGCCTGCCAGGTGCGAAGTGACATTCCTGGTGTGACTTCCGCTGTGCTGCTTCCTTGCCAAAAGAGCTCCAATCCTGGCCTGGTTGTGCTCCTGTGTCCAAGTGCAACCTGTGTGAACCTGTGGCTGCTTGAATATTGTCGGATCTGTGGGTACTTGTTTTGCACTACTGCAACGCAGCTACGTTCCGGCACCGNGCAANGTGATTGCGGNGACTTGGCTGGACTGCATTTGGATCTCCGATTGGGGTACCTGCAGTCCAAAGCCGGGGATTCAAAGTACCATCTGCGTTGCCTGCGAAATTCGATCGAACAGTACAAGACGTGNATTAACATCAAAATAGTTGAGTTTCCTAATTTTAACATTTGACCACTATTGGGTGCTGGGATAATTTGGANTACTTTCGACATTATTCCATCTTACTG]

[+] EMBL AL931425             [CAGAATTCCCTGANGTTTCCAANGCCATCGTCACGGTGTGCAGCATANCAGTGAGNGCCTGTGTGCTATGCCTGTCAAGAAAGCTGTGTGAAATACTGCTCGAACTGCATCAAACCTGGTTCTGCTGATGCTGCATAAGTGACTGCACCTGTGGGAAACCTGTTACCCAGCTCTGTTACGCAGGCAATGTGGACCTGTGCTGCTACCTATCAGTACCTGTGCTGACCTGATGCTGAAGCCTTACATCATCTGGTGTGCTTAAGCTTGTGCCTGAGTGTGTGAGTGTGTGATGTGCTCACGGGCAATGTGCAGCTTGCGCCGTGTCGACATACTTGGAGTGATACTTGGAGAAAGCTTGAGTCCCGGCATTGACGTTGGACAAATTTGAGTGGTTGCGTTTATTATTGGGCNGTCGGGTACTTGGCTGACTTGAAAGCGTTGGTATACAATTGCTTGAGTGACGTGTGCTCTTGCTAACTGAACCTGTACCTTGGACTGTACAAAGCCTGCCAGGTGCGAAGTGACATTCCTGGTGTGACTTCCGCTGTGCTGCTTCCTTGCCAAAAGAGCTCCAATCCTGGCCTGGTTGTGCTCCTGTGTCCAAGTGCAACCTGTGTGAACCTGTGGCTGCTTGAATATTGTCGGATCTGTGGGTACTTGTTTTGCACTACTGCAACGCAGCTACGTTCCGGCACCGNGCAANGTGATTGCGGNGACTTGGCTGGACTGCATTTGGATCTCCGATTGGGGTACCTGCAGTCCAAAGCCGGGGATTCAAAGTACCATCTGCGTTGCCTGCGAAATTCGATCGAACAGTACAAGACGTGNATTAACATCAAAATAGTTGAGTTTCCTAATTTTAACATTTGACCACTATTGGGTGCTGGGATAATTTGGANTACTTTCGACATTATTCCATCTTACTG]


>consensus_5340#0 CAGAATTCCCTGANGTTTCCAANGCCATCGTCACGGTGTGCAGCATANCAGTGAGNGCCT GTGTGCTATGCCTGTCAAGAAAGCTGTGTGAAATACTGCTCGAACTGCATCAAACCTGGT TCTGCTGATGCTGCATAAGTGACTGCACCTGTGGGAAACCTGTTACCCAGCTCTGTTACG CAGGCAATGTGGACCTGTGCTGCTACCTATCAGTACCTGTGCTGACCTGATGCTGAAGCC TTACATCATCTGGTGTGCTTAAGCTTGTGCCTGAGTGTGTGAGTGTGTGATGTGCTCACG GGCAATGTGCAGCTTGCGCCGTGTCGACATACTTGGAGTGATACTTGGAGAAAGCTTGAG TCCCGGCATTGACGTTGGACAAATTTGAGTGGTTGCGTTTATTATTGGGCNGTCGGGTAC TTGGCTGACTTGAAAGCGTTGGTATACAATTGCTTGAGTGACGTGTGCTCTTGCTAACTG AACCTGTACCTTGGACTGTACAAAGCCTGCCAGGTGCGAAGTGACATTCCTGGTGTGACT TCCGCTGTGCTGCTTCCTTGCCAAAAGAGCTCCAATCCTGGCCTGGTTGTGCTCCTGTGT CCAAGTGCAACCTGTGTGAACCTGTGGCTGCTTGAATATTGTCGGATCTGTGGGTACTTG TTTTGCACTACTGCAACGCAGCTACGTTCCGGCACCGNGCAANGTGATTGCGGNGACTTG GCTGGACTGCATTTGGATCTCCGATTGGGGTACCTGCAGTCCAAAGCCGGGGATTCAAAG TACCATCTGCGTTGCCTGCGAAATTCGATCGAACAGTACAAGACGTGNATTAACATCAAA ATAGTTGAGTTTCCTAATTTTAACATTTGACCACTATTGGGTGCTGGGATAATTTGGANT ACTTTCGACATTATTCCATCTTACTG



consensusID : consensus_5340#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 681
fasta sequence
                              [CAAGCGTGGCATCGCCATTTCGCTGATGCGCTATCCGCTCGGGTACTTCGGTGCGTTGCATGCGCTCGTAGCGATCCATGCCGGGGATGGGTCCGTTTCGGTAACGCACGGTGGCATCGAGATGGGCCAGGGCATGAACACGAAGGCGGCCCAGGTGGCGGCGTACGTGCTCGGACTGCCGCTGGAGAAGATCAGCATCAAGCCGACGACTAGTTTGACTTCGCCTAACGCCATCGTCACCGGTGGCAGCATGACCAGTGAGGCCGTGTGCTATGCCGTCAAGAAAGCGTGTGAGATTCTGCTCGAACGCATCAAACCGGTTCGCGATGCGCATAAGGACGCACCGTGGGAAACCGTTACCCAGCTCTGTTACGCAGGCAATGTGGACCTGTGCGCTACCTATCAGTACCGTGCGACCGAGCTGAAGCCTTACATCATCTGGGGCTTAAGCTGTGCCGAGGTGGAGGTGGATGTGCTCACGGGCAATGTGCAGCTGCGCCGTGTCGACATACTGGAAGATACTGGAGAAAGCTTGAGTCCCGGCATTGACGTTGGACAAATTGAGGGTGCGTTCATAATGGGCGTCGGGTACTGGCTGACTGAAGCGTTGGTATACAATGCTGAAGACGGTGCTCTGCTAACGAACCGTACCTGGCACGTACAAGCCGCCAGGTGCGAAGG]

[+] EMBL BX611105             [CAAGCGTGGCATCGCCATTTCGCTGATGCGCTATCCGCTCGGGTACTTCGGTGCGTTGCATGCCCTTGTAGCGATCCATGCCGGGGATGGATCCGTTTCGGTAACGCACGGTGGCATCGAGATGGGCCAGGGCATGAACACGAAGGCGGCCCAGGTGGCGGCCTACGTGCTCGGACTGCCGCTGGAGAAGATCAGCATCAAGCCGACGACGAGTTTGACTTCACCCAACGCCATCGTCACCGGTGGCAGCATGACCAGTGAGGCCGTGTGCTATGCCGTCAAGAAAGCGTGTGAAATACTTCTCGAACGCATCAAACCGGTTCGCGATGCGCATAAGGACGCACCGTGGGAAACCGTTACCCAGCTCTGTTACGCAGGCAATGTGGACCTGTGCGCTACCTATCAGTACCGTGCGACCGAGCTGAAGCCTTACATCATCTGGGGCTTAAGCTGTGCCGAGGTGGAGGTGGATGTGCTCACGGGCAATGTGCAGCTGCGCCGTGTCGACATACTGGAGGATACTGGAGAAAGCTTGAGTCCCGGCATTGACGTTGGACAAA                                                                                                                         ]
[+] EMBL BM634290             [                                    ccgCGGGTACTTCGGTGCGTTGCATGCGCTCGTAGCGATCCATGCCGGGGATGGGTCCGTTTCGGTAACGCACGGTGGCATCGAGATGGGCCAGGGCATGAACACGAAGGCGGCCCAGGTGGCGGCGTACGTGCTCGGACTGCCGCTGGAGAAGATCAGCATCAAGCCGACGACTAGTTTGACTTCGCCTAACGCCATCGTCACCGGTGGCAGCATGACCAGTGAGGCCGTGTGCTATGCCGTCAAGAAAGCGTGTGAGATTCTGCTCGAACGCATCAAACCGGTTCGCGATGCGCATAAGGACGCACCGTGGGAAACCGTTACCCAGCTCTGTTACGCAGGCAATGTGGACCTGTGCGCTACCTATCAGTACCGTGCGACCGAGCTGAAGCCTTACATCATCTGGGGCTTAAGCTGTGCCGAGGTGGAGGTGGATGTGCTCACGGGCAATGTGCAGCTGCGCCGTTTCGACATACTGGAAGATACTGGAGAAAGCTTGAGTCCCGGCATTGACGTTGGACAAATTGAGGGTGCGTTCATAATGGGCGTCGGGTACTGGCTGACTGAAGCGTTGGTATACAATGCTGAAGACGGTGCTCTGCTAACGAACCGTACCTGGCACGTACAAGCCGCCAGGTGCGAAGG]
[+] EMBL BM611608             [                                               cCGGTGCGTTGCATGCGCTCGTAGCGATCCATGCCGGGGATGGGTCCGTTTCGGTAACGCACGGTGGCATCGAGATGGGCCAGGGCATGAACACGAAGGCGGCCCAGGTGGCGGCGTACGTGCTCGGACTGCCGCTGGAGAAGATCAGCATCAAGCCGACGACTAGTTTGACTTCGCCTAACGCCATCGTCACCGGTGGCAGCATGACCAGTGAGGCCGTGTGCTATGCCGTCAAGAAAGCGTGTGAGATTCTGCTCGAACGCATCAAACCGGTTCGCGATGCGCATAAGGACGCACCGTGGGAAACCGTTACCCAGCTCTGTTACGCAGGCAATGTGGACCTGTGCGCTACCTATCAGTACCGTGCGACCGAGCTGAAGCCTTACATCATCTGGGGCTTAAGCTGTGCCGAGGTGGAGGTGGATGTGCTCACGGGCAATGTGCAGCTGCGCCGTGTCGACATACTGGAAGATACTGGAGAAAGCTTGAGTCCCGGCAT                                                                                                                                       ]


>consensus_5340#1 CAAGCGTGGCATCGCCATTTCGCTGATGCGCTATCCGCTCGGGTACTTCGGTGCGTTGCA TGCGCTCGTAGCGATCCATGCCGGGGATGGGTCCGTTTCGGTAACGCACGGTGGCATCGA GATGGGCCAGGGCATGAACACGAAGGCGGCCCAGGTGGCGGCGTACGTGCTCGGACTGCC GCTGGAGAAGATCAGCATCAAGCCGACGACTAGTTTGACTTCGCCTAACGCCATCGTCAC CGGTGGCAGCATGACCAGTGAGGCCGTGTGCTATGCCGTCAAGAAAGCGTGTGAGATTCT GCTCGAACGCATCAAACCGGTTCGCGATGCGCATAAGGACGCACCGTGGGAAACCGTTAC CCAGCTCTGTTACGCAGGCAATGTGGACCTGTGCGCTACCTATCAGTACCGTGCGACCGA GCTGAAGCCTTACATCATCTGGGGCTTAAGCTGTGCCGAGGTGGAGGTGGATGTGCTCAC GGGCAATGTGCAGCTGCGCCGTGTCGACATACTGGAAGATACTGGAGAAAGCTTGAGTCC CGGCATTGACGTTGGACAAATTGAGGGTGCGTTCATAATGGGCGTCGGGTACTGGCTGAC TGAAGCGTTGGTATACAATGCTGAAGACGGTGCTCTGCTAACGAACCGTACCTGGCACGT ACAAGCCGCCAGGTGCGAAGG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5340#0      ------------------------------------------------------------
consensus_5340#1      CAAGCGTGGCATCGCCATTTCGCTGATGCGCTATCCGCTCGGGTACTTCGGTGCGTTGCA 60
                                                                                  

consensus_5340#0      ------------------------------------------------------------
consensus_5340#1      TGCGCTCGTAGCGATCCATGCCGGGGATGGGTCCGTTTCGGTAACGCACGGTGGCATCGA 120
                                                                                  

consensus_5340#0      ------------------------------------------------------------
consensus_5340#1      GATGGGCCAGGGCATGAACACGAAGGCGGCCCAGGTGGCGGCGTACGTGCTCGGACTGCC 180
                                                                                  

consensus_5340#0      -------------------------CAGAATTCCCTGANGTTTCC-AANGCCATCGTCAC 34
consensus_5340#1      GCTGGAGAAGATCAGCATCAAGCCGACGACTAGTTTGACTTCGCCTAACGCCATCGTCAC 240
                                                 ** *    ***  *  ** ** ***********

consensus_5340#0      GGTGTGCAGCAT-ANCAGTGAGNGCCTGTGTGCTATGCCTGTCAAGAAAGCTGTGTGAAA 93
consensus_5340#1      CGGTGGCAGCATGACCAGTGAGG--CCGTGTGCTATGCC-GTCAAGAAAGC-GTGTGAGA 296
                       *   ******* * *******   * ************ *********** ****** *

consensus_5340#0      TACTGCTCGAACTGCATCAAACCTGGTTCTGCTGATGCTGCATAAGTGACTGCACCTGTG 153
consensus_5340#1      TTCTGCTCGAAC-GCATCAAACC-GGTTCG--CGATGC-GCATAAG-GAC-GCACC-GTG 348
                      * ********** ********** *****    ***** ******* *** ***** ***

consensus_5340#0      GGAAACCTGTTACCCAGCTCTGTTACGCAGGCAATGTGGACCTGTGCTGCTACCTATCAG 213
consensus_5340#1      GGAAACC-GTTACCCAGCTCTGTTACGCAGGCAATGTGGACCTGTGC-GCTACCTATCAG 406
                      ******* *************************************** ************

consensus_5340#0      TACCTGTGCTGACCTGATGCTGAAGCCTTACATCATCTGGTGTGCTTAAGCTTGTGCCTG 273
consensus_5340#1      TACC-GTGC-GACCGA--GCTGAAGCCTTACATCATCTGGG--GCTTAAGCT-GTGCC-G 458
                      **** **** ****    **********************   ********* ***** *

consensus_5340#0      AGTGTGTGAGTGTGTGATGTGCTCACGGGCAATGTGCAGCTTGCGCCGTGTCGACATACT 333
consensus_5340#1      AG---GTGGAGGTG-GATGTGCTCACGGGCAATGTGCAGCT-GCGCCGTGTCGACATACT 513
                      **   ***   *** ************************** ******************

consensus_5340#0      TGGAGTGATACTTGGAGAAAGCTTGAGTCCCGGCATTGACGTTGGACAAATTTGAGTGGT 393
consensus_5340#1      GGAA--GATACT-GGAGAAAGCTTGAGTCCCGGCATTGACGTTGGACAAATT---GAGGG 567
                       * *  ****** ***************************************   * ** 

consensus_5340#0      TGCGTTTATTATTGGGCNGTCGGGTACTTGGCTGACTTGAAAGCGTTGGTATACAATTGC 453
consensus_5340#1      TGCGTTCATAATGGG--CGTCGGGTACT-GGCTGACT--GAAGCGTTGGTATACAAT-GC 621
                      ****** ** ** **   ********** ********   ***************** **

consensus_5340#0      TTGAGTGACGTGTGCTCTTGCTAACTGAACCTGTACCTTGGACTGTACAAAGCCTGCCAG 513
consensus_5340#1      TGAA--GACG-GTGCTCT-GCTAAC-GAACC-GTACCTGGCAC-GTACAAG--CCGCCAG 672
                      *  *  **** ******* ****** ***** ****** * ** ******   * *****

consensus_5340#0      GTGCGAAGTGACATTCCTGGTGTGACTTCCGCTGTGCTGCTTCCTTGCCAAAAGAGCTCC 573
consensus_5340#1      GTGCGAAGG--------------------------------------------------- 681
                      ********                                                    

consensus_5340#0      AATCCTGGCCTGGTTGTGCTCCTGTGTCCAAGTGCAACCTGTGTGAACCTGTGGCTGCTT 633
consensus_5340#1      ------------------------------------------------------------
                                                                                  

consensus_5340#0      GAATATTGTCGGATCTGTGGGTACTTGTTTTGCACTACTGCAACGCAGCTACGTTCCGGC 693
consensus_5340#1      ------------------------------------------------------------
                                                                                  

consensus_5340#0      ACCGNGCAANGTGATTGCGGNGACTTGGCTGGACTGCATTTGGATCTCCGATTGGGGTAC 753
consensus_5340#1      ------------------------------------------------------------
                                                                                  

consensus_5340#0      CTGCAGTCCAAAGCCGGGGATTCAAAGTACCATCTGCGTTGCCTGCGAAATTCGATCGAA 813
consensus_5340#1      ------------------------------------------------------------
                                                                                  

consensus_5340#0      CAGTACAAGACGTGNATTAACATCAAAATAGTTGAGTTTCCTAATTTTAACATTTGACCA 873
consensus_5340#1      ------------------------------------------------------------
                                                                                  

consensus_5340#0      CTATTGGGTGCTGGGATAATTTGGANTACTTTCGACATTATTCCATCTTACTG 926
consensus_5340#1      -----------------------------------------------------
                                                                           




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)