These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5346#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1178 fasta sequence [GTTTATATTAATGTGTTTTTCTTAATTTTCTTAATTAACGTGTTTTCACGTATTGCCTCTGTCTCTTGATTTACGTTACACACTGTCTACGTCTGTCAGCTTTGTGAATAACAAGCAAATGATGTGCGTTTGCATTGTCTTACTCTGTTGTACTTTCATCTCATATGCTGTGGTTATTGTTCTGCCGGTGTATATTTTCACCATGATTGAGTTCAATCCAATCAAAGTTCAATGTTGGTCTAGCTTTCAACAGGAAACGCTAAACACGAACAAAGACGATATATTAGCAAACACACGCCGGTAAAGAAGTCACTAAGCACAACTGAGAAACAGGTATGCAATGGACAGTAAATGAGTCGTACATAGGGCATAGCAGCTGGTTTTGATTTCTTTGCAATGATGTTTTCCCCATTAATTCCATCTATACAGCTAATAGTGTGACACGCTATACATGATGAAATGGCGCAGTTTGTAGCATTAATGGTAGCTTAGCAGTTGCAAATAGCGCGCTGTGTGGGACAACAAGGATCACAAACACCCATCCCTTGAACAAACCATAGCGAAATATTAGCATATAGGGTGCACACTTCATGCTAGGAGGGAAATGTACGAACGATAAATAGCAGAA--GCAGCGCTGTCTAGCGAAACAATGTAATTTACATCTTCTGGATTAT-AATGCCCGTACTGAAACAACCTGGAAAATGTGTGTGTGTGTGTATTTGTGTGTGAGTGTTTGAAGTCGTCCTGTTCAAACCTGTCCGTTCATTGTTGATCGAGGCGGCATAAGCATGAGACAAGCAAGTATAAGTCAGGAAAAGAAACGTTTAATGGAACGAAGAACTTACTCCCATGTTGTCCATGCCGGTAATGATCGTCGAAACACACAGTGTCAGAGAGAGAGCGAGAGCGAGAGAGAGAGCGAGAGAAAGTGTTAGATAATAGATCAACTAGAAAAAGAAAAGCACGAAAATCATAGATAAACAGAATACTTGCATTAAACAACAGTTAAAAATATATGAAACAAAAAACTGATTTGTGCCAGCGCGAATCAACTTTGGTGTAAAACGTATATAATAGTTGCGAGGAGAGAGGATCATTCAATCTCATACACAAAAGATCGCTAGTTTGGTGGAAGGAGAGATGGAAAGTATGATTACAAATTTCGACACAAAATGATT] [+] EMBL BX621916 [GTTTATATTAATGTGTTTTTCTTAATTTTCTTAATTAACGTGTTTTCACGTATTGCCTCTGTCTCTTGATTTACGTTACACACTGTCTACGTCTGTCAGCTTTGTGAATAACAAGCAAATGATGTGCGTTTGCATTGTCTTACTCTGTTGTACTTTCATCTCATATGCTGTGGTTATTGTTCTGCCGGTGTATATTTTCACCATGATTGAGTTCAATCCAATCAAAGTTCAATGTTGGTCTAGCTTTCAACAGGAAACGCTAAACACGAACAAAGACGATATATTAGCAAACACACGCCGGTAAAGAAGTCACTAAGCACAACTGAGAAACAGGTATGCAATGGACAGTAAATGAGTCGTACATAGGGCATAGCAGCTGGTTTTGATTTCTTTGCAATGATGTTTTCCCCATTAATTCCATCTATACAGCTAATAGTGTGACACGCTATACATGATGAAATGGCGCAGTTTGTAGCATTAATGGTAGCTTAGCAGTTGCAAATAGCGCGCTGTGTGGGACAACAAGGATCACAAACACCCATCCCTTGAACAAACCATAGCGAAATATTAGCATATAGGGTGCACACTTCATGCTAGGAGGGAAATGTACGAACGATAAATAGCAGAA GCAGCGCTGTCTAGCGAAACAATGTAATTTACATCTTCTGGATTAT AATGCCCG ] [+] EMBL BX609289 [ ATTTCTTTGCAATGATGTTTTCCCCATTAATTCCATCTATACAGCTAATAGTGTGACACGCTATACATGATGAAATGGCGCAGTTTGTAGCATTAATGGTAGCTTAGCAGTTGCAAATAGCGCGCTGTGTGGGACAACAAGGATCACAAACACCCATCCCTTTGACAAACCATAGCGAAATATTAACATATAGGGTGCACACTTCATGCT ] [+] EMBL BX628429 [ TGCTAGGTGGGAAGTGTACGAACGATAAATAGCAGAAGCGCAGCGCTGTCTAGCGAAACAATGTAATTTACATCTTCTGGATTATAAATGCCTGTACTGAAACAACCTGGAAAATGTGTGTGTGTGTGTATTTGTGTGTGAGTGTTTGAAGTCGTCCTGTTCAAACCTGTCCGTTCATTGTTGATCGAGGCGGCATAAGCATGAGACAAGCAAGTATAAGTCAGGAAAAGAAACGTTTAATGGAACGAAGAACTTACTCCCATGTTGTCCATGCCGGTAATGATCGTCGAAACACACAGTGTCAGAGAGAGAGCGAGAGCGAGAGAGAGAGCGAGAGAAAGTGTTAGATAATAGATCAACTAGAAAAAGAAAAGCACGAAAATCATAGATAAACAGAATACTTGCATTAAACAACAGTTAAAAATATATGAAACAAAAAACTGATTTGTGCCAGCGCGAATCAACTTTGGTGTAAAACGTATATAATAGTTGCGAGGAGAGAGGATCATTCAATCTCATACACAAAAGATCGCTAGTTTGGTGGAAGGAGAGATGGAAAGTATGATTACAAATTTCGACACAAAATGATT] consensusID : consensus_5346#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 672 fasta sequence [CCATAACACACACCACAGGCATTAAGAAAAAAAGGAAAACTTATTAATACTATTATCACGAGCAGTGGTGTTGTAACTAACACACGACGAGAGTCAGGGAGAGAGAGAGAGCGAGAGCGAGAGAGAGAGCGAGAGAAAGTGTTAGATAATAGATCAACTAGAAAAAGAAAAGCACGAAAATCATAGATAAACAGAATACTTGCATTAAACAACAGTTAAAAATATATGAAACAAAAAACTGATTTGTGCCAGCGCGAATCAACTTTGGTGTAAAACGTATATAATAGTTGCGAGGAGAGAGGATCATTCAATCTCATACACAAAAGATCGCTAGTTTGGTGGAAGGAGAGATGGAAAGTATGATTACAAATTTCGACACAAAATGATTGATACAATAGCGTTAACGTCTTTTTTTTTTGGCTGACAATGCGCGCAGTGAAGGTAAAAGAGAAGGGGACACACTAGCGAACGAAAAGTTAGAAAAAAAAACATTTGAATTTTGCTTCTCCAAGTATTTTCCTCATAAAATACATCAACGATCAGAAACGATGAGCAGTTGCAGCGGTAATAATGGGTTCAGTTTCAGCACCAATTTGCATTGGTTAAATTGAAAAGTATAACGTACACNCAACTGGCAAATGCGATGTNAAGAGGATTGANCCATATAAAATA] [+] EMBL BX621185 [CCATAACACACACCACAGGCATTAAGAAAAAAAGGAAAACTTATTAATACTATTATCACGAGCAGTGGTGTTGTAACTAACACACGACGAGAGTCAGGGAGAGAGAGAGAGCGAGAGCGAGAGAGAGAGCGAGAGAAAGTGTTAGATAATAGATCAACTAGAAAAAGAAAAGCACGAAAATCATAGATAAACAGAATACTTGCATTAAACAACAGTTAAAAATATATGAAACAAAAAACTGATTTGTGCCAGCGCGAATCAACTTTGGTGTAAAACGTATATAATAGTTGCGAGGAGAGAGGATCATTCAATCTCATACACAAAAGATCGCTAGTTTGGTGGAAGGAGAGATGGAAAGTATGATTACAAATTTCGACACAAAATGATTGATACAATAGCGTTAACGTCTTTTTTTTTTGGCTGACAATGCGCGCAGTGAAGGTAAAAGAGAAGGGGACACACTAGCGAACGAAAAGTTAGAAAAAAAAACATTTGAATTTTGCTTCTCCAAGTATTTTCCTCATAAAATACATCAACGATCAGAAACGATGAGCAGTTGCAGCGGTAATAATGGGTTCAGTTTCAGCACCAATTTGCATTGGTTAAATTGAAAAGTATAACGTACACNCAACTGGCAAATGCGATGTNAAGAGGATTGANCCATATAAAATA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5346#0 GTTTATATTAATGTGTTTTTCTTAATTTTCTTAATTAACGTGTTTTCACGTATTGCCTCT 60 consensus_5346#1 ------------------------------------------------------------ consensus_5346#0 GTCTCTTGATTTACGTTACACACTGTCTACGTCTGTCAGCTTTGTGAATAACAAGCAAAT 120 consensus_5346#1 ------------------------------------------------------------ consensus_5346#0 GATGTGCGTTTGCATTGTCTTACTCTGTTGTACTTTCATCTCATATGCTGTGGTTATTGT 180 consensus_5346#1 ------------------------------------------------------------ consensus_5346#0 TCTGCCGGTGTATATTTTCACCATGATTGAGTTCAATCCAATCAAAGTTCAATGTTGGTC 240 consensus_5346#1 ------------------------------------------------------------ consensus_5346#0 TAGCTTTCAACAGGAAACGCTAAACACGAACAAAGACGATATATTAGCAAACACACGCCG 300 consensus_5346#1 ------------------------------------------------------------ consensus_5346#0 GTAAAGAAGTCACTAAGCACAACTGAGAAACAGGTATGCAATGGACAGTAAATGAGTCGT 360 consensus_5346#1 ------------------------------------------------------------ consensus_5346#0 ACATAGGGCATAGCAGCTGGTTTTGATTTCTTTGCAATGATGTTTTCCCCATTAATTCCA 420 consensus_5346#1 ------------------------------------------------------------ consensus_5346#0 TCTATACAGCTAATAGTGTGACACGCTATACATGATGAAATGGCGCAGTTTGTAGCATTA 480 consensus_5346#1 ---CCATAACACACACCACAG-GCATTAAGAAAAAAAGGAAAACTTA-TTAATACTATTA 55 * * * * * * ** * * * * * ** ** **** consensus_5346#0 ATGGTAGCTTAGCAGTTGCAAATAGCGCGCTGTGTGGGACAACAAGGATCACAAACACCC 540 consensus_5346#1 TCACGAGCAGTGGTGTTGTAACTAACACACGACGAGAGTCAGGGAGAGAGAGAGAGCGAG 115 *** * **** ** ** * * * * * * ** ** * * * consensus_5346#0 ATCCCTTGAACAAACCATAGCGAAATATTAGCATATAGGGTGCACACTTCATGCTAGGAG 600 consensus_5346#1 AGCGAGAGAGAGAGCGAGAG-AAAGTGTTAGATAATAGA---------TCAACTAGAAAA 165 * * ** * * * ** ** * **** **** *** * consensus_5346#0 GGAAATGTACGAACGATAAATAGCAGAAGCAGCGCTGTCTAGCGAAACAATGTAATTTAC 660 consensus_5346#1 AGAAAAGCACGAAAATCATAGATAAACAGAATACTTGCATTAAACAACAGTTAAAAATAT 225 **** * ***** * * * * ** * ** * **** * ** ** consensus_5346#0 ATCTTCTGGATTATAATGCCCGTACTGAAACAACCTGGAAAATGTGTGTG-TGTGTGTAT 719 consensus_5346#1 ATGAAACAAAAAACTG-ATTTGTGCCAGCGCGAATCAACTTTGGTGTAAAACGTATATAA 284 ** * * ** * * * **** ** * ** consensus_5346#0 TTGTGTGTGAGTGTTTGAAGTCGTCCTGT-TCAAACCTGTCCGTTCATTGTTGATCGAGG 778 consensus_5346#1 TAGT-TGCGAGGAGAGAGGATCATTCAATCTCATACACAAAAG---ATCGCTAGTTTGGT 340 * ** ** *** ** * * * *** ** * ** * * * * consensus_5346#0 CGGCATAAGCATGAGACAAGCAAGTATAAGTCAGGAAAAGAAACGTTTAATGGAACGAAG 838 consensus_5346#1 GGAAGGAGAGATGGAAAGTATGATTACAAATTTCGACACAAAATGATTGATACAATAGCG 400 * * *** * * ** ** * ** * *** * ** ** ** * consensus_5346#0 AACTTACTCCCATGTTGTCCATGCCGGTAATGATCGTCGAAACACACAGTGTCAGAGAGA 898 consensus_5346#1 ---TTAACGTCTTTTTTTTTTGGCTGACAATG----------CGCGCAGTG--AAGGTAA 445 *** * * ** * ** * **** * * ***** * * * consensus_5346#0 GAGCGAGAGCGAGAGAGAGAGCGAGAGAAAGTGTTAGATAATAGATCAACTAGAAAAAGA 958 consensus_5346#1 AAGAGAAGGGGACACACT-AGCGAACGAAAA-GTTAGAAAAAAAAACA-TTTGAATTTTG 502 ** ** * ** * * ***** **** ****** ** * * ** * *** consensus_5346#0 AAAGCACGAAAATCATAGATAAACAGAATACTTGCATTAAACAACAGTTAAAAATATATG 1018 consensus_5346#1 CTTCTCCAAGTATTTTCCTCATAAAATACATCAACGATCAGAAACGATGAGCAGTTGCAG 562 * * ** * * * * * * * * * *** * * * * * consensus_5346#0 AAACAAAAAACTGATTTGTGCCAGCGCGAATCAACTTTGGTGTAAAACGTATATAATAGT 1078 consensus_5346#1 CGGTAATAATGGGTTCAGTTTCAGCACCAATTTGCATTGGT-TAAATTGAAAAGTATAAC 621 ** ** * * ** **** * *** * ***** **** * * * *** consensus_5346#0 TGCGAGGAGAGAGGATCATTCAATCTCATACACAAAAGATCGCTAGTTTGGTGGAAGGAG 1138 consensus_5346#1 -----GTACACNCAACTGGCAAATGCGATGTNAAGAGGATTG--ANCCATATAAAATA-- 672 * * * * *** ** * * *** * * * ** consensus_5346#0 AGATGGAAAGTATGATTACAAATTTCGACACAAAATGATT 1178 consensus_5346#1 ---------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||