These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5355#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1279 fasta sequence [CCGAGCTGCCAGAACGAAATCGCTTCACACAAAATTACACCCAAATTCGGCGCCCGAAATCGATAAGAAACCCGATCAACCATGACCGCGGACAGTGTGGATTTAGTGTGAAATCACAATTCTACCCATCGCCAGCAAAATGTGGTGATAGTTCTACGCAAAAGCCGCTCCTCCTCGGTGGTGGTGGTGGTGGTGGGTGTAGCGCACGCTTTTCTTTCCTTTTTTTTCGCTCTTCACTCTTGTTTACGAATCACGCGCTGCTCGGTGCCAGCTGGTGGCCATTTACGGTGCTAAATCTTCACCCTGCATCAGTGCGCATCACGATGGATGGCATGTGCTTCGATTACGATCACTACTTCGCGGAAGAAACGTTCATCATCGACGATTTCGGTGAGATCTGCGAGGATGTGGTCCGGATTGCCGGTGCGAGCTCGCTGCACCTTTGCAAGGATTTCGATGCGGAACTGCGCCGGCAGGAAAGCCCCCCTCCCGGTGGCTTTAACGCTGGCTCGAGCCGTTGCTTCGACAAGGAGGTATCGTCACTCTTCTCCGAGATGGAATACCTTACCGAAGTGTCGCCCGGGACGGATGTGGTGCTGTCGGACACGAGCGCCATTACGATTGCGGTCAATCCCAGCGAGTTTTCCTGCAAACGGCCCATCCGGCGGGAACCACCGGACGGAACGGGCGCACAGGAAGGTGGTGGGCAAAATGATGGTAAGGAAGCTTCAGCCGTACAGACACCCGAGCCAGACAAAACTGCTTCACCCCACCACCAGCAGGAACCGGCGGCGCACGGCAATCTGTCCCCTCCGGTAGAGTATCAGCGCATTTTGAACAATTACATTCAAAAGGGCCGCCGAAAGCTGGAAGCTAGCTCGTACTCCAAGATGAAAGCGTCCTGCCCGACCGGGGACCGATGGACGGCATCGGCACGACTATCTACCTCAGCGCTCGAAACGGTAACGGCGTCAATGCAACCGTCCGCTAAGACCACTTCCGGGTCCAGCCCAGCACCTGTCACTGCCATTGTCCCAAAGTTCGACCACCACAATCCTTCCGCCTCCATTAGACAAACGGTGAATATGATACAATCATCTCAACTGTCACCGCTCTTCCCATCGGTACAGCCGGCTGCCCAGAGCCGGACTGCTTCGTCGGTGCTGCTCAAACCGACACGATTGCATCACTGCCGGGATTGTGGGCTGTCGTACGCGTCCAGCGAGTCGCTGCGGAAGCACTGCTGCATCATCGCGGAACAGTACCAGTGGCATCTGTG] [+] EMBL BM650257 [CCGAGCTGCCAGAACGAAATCGCTTCACACAAAATTACACCCAAATTCGGCGCCCGAAATCGATAAGAAACCCGATCAACCATGACCGCGGACAGTGTGGATTTAGTGTGAAATCACAATTCTACCCATCGCCAGCAAAATGTGGTGATAGTTCTACGCAAAAGCCGCTCCTCCTCGGTGGTGGTGGTGGTGGTGGGTGTAGCGCACGCTTTTCTTTCCTTTTTTTTCGCTCTTCACTCTTGTTTACGAATCACGCGCTGCTCGGTGCCAGCTGGTGGCCATTTACGGTGCTAAATCTTCACCCTGCATCAGTGCGCATCACGATGGATGGCATGTGCTTCGATTACGATCACTACTTCGCGGAAGAAACGTTCATCATCGACGATTTCGGTGAGATCTGCGAGGATGTGGTCCGGATTGCCGGTGCGAGCTCGCTGCACCTTTGCAAGGATTTCGATGCGGAACTGCGCCGGCAGGAAAGCCCCCCTCCCGGTGGCTTTAACGCTGGCTCGAGCCGTTGCTTCGACAAGGAGGTATCGTCACTCTTCTCCGAGATGGAATACCTTACCGAAGTGTCGCCCGGGACGGATGTGGTGCTGTCGGACACGAGCG ] [+] EMBL BM608423 [ ccgGCCAGAACGAAATCGCTTCACACAAAATTACACCCAAATTCGGCGCCCGAAATCGATAAGAAACCCGATCAACCATGACCGCGGACAGTGTGGATTTAGTGTGAAATCACAATTCTACCCATCGCCAGCAAAATGTGGTGATAGTTCTACGCAAAAGCCGCTCCTCCTCGGTGGTGGTGGTGGTGGTGGGTGTAGCGCACGCTTTTCTTTCCTTTTTTTTCGCTCTTCACTCTTGTTTACGAATCACGCGCTGCTCGGTGCCAGCTGGTGGCCATTTACGGTGCTAAATCTTCACCCTGCATCAGTGCGCATCACGATGGATGGCATGTGCTTCGATTACGATCACTACTTCGCGGAAGAAACGTTCATCATCGACGATTTCGGTGAGATCTGCGAGGATGTGGTCCGGATTGCCGGTGCGAGCTCGCTGCACCTTTGCAAGGATTTCGATGCGGAACTGCGCCGGCAGGAAAGCCCCCCTCCCGGTGGCTTTAACGCTGGCTCGAGCCGTTGCTTCGACAAGGAGGTATCGTCACTCTTCTCCGAGATGGAATACCTTACCGAAGTGTCGCCCGGGACGGATGTGGTGCTGTCGGACACGAGCGCCATTACGATTGCGGTCAATCCCAGCGAGTTTTCCTGC ] [+] EMBL BX610254 [ CGGACACGAGCGCCATTACGATTGCCGTCAATCCTAGCGAGTTTTCCTGCAAACGGCCCATCCGGCGGGAACCACCGGACGGAACGGGCGCACAGGAAGGTGGTGGGCAAAATGATGGTAAGGAAGCTTCAGCCGTACAGACACCCGAGCCAGACAAAACTGCTTCACCCCACCACCAGCAGGAACCGGCGGCGCACGGCAATCTGTCCCCTCCGGTAGAGTATCAGCGCATTTTGAACAATTACATTCAAAAGGGCCGCCGAAAGCTGGAAGCTAGCTCGTACTCCAAGATGAAAGCGTCCTGCCCGACCGGGGACCGATGGACGGCATCGGCACGACTATCTACCTCAGCGCTCGAAACGGTAACGGCGTCAATGCAACCGTCCGCTAAGACCACTTCCGGGTCCAGCCCAGCACCTGTCACTGCCATTGTCCCAAAGTTCGACCACCACAATCCTTCCGCCTCCATTAGACAAACGGTGAATATGATACAATCATCTCAACTGTCACCGCTCTTCCCATCGGTACAGCCGGCTGCCCAGAGCCGGACTGCTTCGTCGGTGCTGCTCAAACCGACACGATTGCATCACTGCCGGGATTGTGGGCTGTCGTACGCGTCCAGCGAGTCGCTGCGGAAGCACTGCTGCATCATCGCGGAACAGTACCAGTGGCATCTGTG] consensusID : consensus_5355#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 687 fasta sequence [GAATTGCCGAGGTNAAATTTCACCCAAATTCGGCGCCCGAAATCGATAAGAAACCGATCAACCATGACCGCGGACAGTGTGGATTTAGTGTGAAATCACAATTCTACCCATCGCCAGCAAAATGTGGTGATAGTTCTACGCAAAAGCCGCTCCTCCTCGGTGGTGGTGGTGGTGGTGGGTGTAGCTGCACGCTTTTCTTTCCTTTTTTTTCGCTCTTCACTCTTGTTTACGAATCACTGCTGCCGCTCGGTGCCAGCTGGTGGCCATTTACGGTGCTAAATCTTCCCCCGCATCAGTGCGCATCACGATGGATGGCATTGTGCTTCGATTACGATCACTACTTCGCGGAAGAAACGTTCATCATCGACGATTTCGGTGAGATCTTGCGAGGATGTGGTCCGGATTGCCGGTGCGAACTCGCTGCACCTTTGCAAGGATTTCGATGCGGAACTGCGCCGGCAGGAAAGCCCCCCTCCCGGTGGCTTTAACGCTGGCTCGAGCCGCTGCTTCGACAAGGAGGTATCGTCACTCTTCTCCGAGATGGNCATACTTTACCGAAGTGTACGCCCGGGACGGACTGTTGGTGCTGTCGCGGGACCACGAGCGCCATTTACGATTGCCGGTCAATCCTAGCGAAGTTNCCTGCCAACGGCCATCCGGGCGGNAACCCACCNGGAGGCACCGCGG] [+] EMBL AL931841 [GAATTGCCGAGGTNAAATTTCACCCAAATTCGGCGCCCGAAATCGATAAGAAACCGATCAACCATGACCGCGGACAGTGTGGATTTAGTGTGAAATCACAATTCTACCCATCGCCAGCAAAATGTGGTGATAGTTCTACGCAAAAGCCGCTCCTCCTCGGTGGTGGTGGTGGTGGTGGGTGTAGCTGCACGCTTTTCTTTCCTTTTTTTTCGCTCTTCACTCTTGTTTACGAATCACTGCTGCCGCTCGGTGCCAGCTGGTGGCCATTTACGGTGCTAAATCTTCCCCCGCATCAGTGCGCATCACGATGGATGGCATTGTGCTTCGATTACGATCACTACTTCGCGGAAGAAACGTTCATCATCGACGATTTCGGTGAGATCTTGCGAGGATGTGGTCCGGATTGCCGGTGCGAACTCGCTGCACCTTTGCAAGGATTTCGATGCGGAACTGCGCCGGCAGGAAAGCCCCCCTCCCGGTGGCTTTAACGCTGGCTCGAGCCGCTGCTTCGACAAGGAGGTATCGTCACTCTTCTCCGAGATGGNCATACTTTACCGAAGTGTACGCCCGGGACGGACTGTTGGTGCTGTCGCGGGACCACGAGCGCCATTTACGATTGCCGGTCAATCCTAGCGAAGTTNCCTGCCAACGGCCATCCGGGCGGNAACCCACCNGGAGGCACCGCGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5355#0 CCGAGCTGCCAGAACGAAATCGCTTCACACAAAATTACACCCAAATTCGGCGCCCGAAAT 60 consensus_5355#1 ----------------GAATTGCCG-AGGTNAAATTTCACCCAAATTCGGCGCCCGAAAT 43 *** ** * ***** *********************** consensus_5355#0 CGATAAGAAACCCGATCAACCATGACCGCGGACAGTGTGGATTTAGTGTGAAATCACAAT 120 consensus_5355#1 CGATAAGAAACC-GATCAACCATGACCGCGGACAGTGTGGATTTAGTGTGAAATCACAAT 102 ************ *********************************************** consensus_5355#0 TCTACCCATCGCCAGCAAAATGTGGTGATAGTTCTACGCAAAAGCCGCTCCTCCTCGGTG 180 consensus_5355#1 TCTACCCATCGCCAGCAAAATGTGGTGATAGTTCTACGCAAAAGCCGCTCCTCCTCGGTG 162 ************************************************************ consensus_5355#0 GTGGTGGTGGTGGTGGGTGTAGC-GCACGCTTTTCTTTCCTTTTTTTTCGCTCTTCACTC 239 consensus_5355#1 GTGGTGGTGGTGGTGGGTGTAGCTGCACGCTTTTCTTTCCTTTTTTTTCGCTCTTCACTC 222 *********************** ************************************ consensus_5355#0 TTGTTTACGAATCACG--CGCTGCTCGGTGCCAGCTGGTGGCCATTTACGGTGCTAAATC 297 consensus_5355#1 TTGTTTACGAATCACTGCTGCCGCTCGGTGCCAGCTGGTGGCCATTTACGGTGCTAAATC 282 *************** ** ************************************** consensus_5355#0 TTCACCCTGCATCAGTGCGCATCACGATGGATGGCAT-GTGCTTCGATTACGATCACTAC 356 consensus_5355#1 TTC-CCCCGCATCAGTGCGCATCACGATGGATGGCATTGTGCTTCGATTACGATCACTAC 341 *** *** ***************************** ********************** consensus_5355#0 TTCGCGGAAGAAACGTTCATCATCGACGATTTCGGTGAGATCT-GCGAGGATGTGGTCCG 415 consensus_5355#1 TTCGCGGAAGAAACGTTCATCATCGACGATTTCGGTGAGATCTTGCGAGGATGTGGTCCG 401 ******************************************* **************** consensus_5355#0 GATTGCCGGTGCGAGCTCGCTGCACCTTTGCAAGGATTTCGATGCGGAACTGCGCCGGCA 475 consensus_5355#1 GATTGCCGGTGCGAACTCGCTGCACCTTTGCAAGGATTTCGATGCGGAACTGCGCCGGCA 461 ************** ********************************************* consensus_5355#0 GGAAAGCCCCCCTCCCGGTGGCTTTAACGCTGGCTCGAGCCGTTGCTTCGACAAGGAGGT 535 consensus_5355#1 GGAAAGCCCCCCTCCCGGTGGCTTTAACGCTGGCTCGAGCCGCTGCTTCGACAAGGAGGT 521 ****************************************** ***************** consensus_5355#0 ATCGTCACTCTTCTCCGAGATGGA-ATACCTTACCGAAGTGT-CGCCCGGGACGGATG-- 591 consensus_5355#1 ATCGTCACTCTTCTCCGAGATGGNCATACTTTACCGAAGTGTACGCCCGGGACGGACTGT 581 *********************** **** ************ ************* consensus_5355#0 TGGTGCTGTCGGA----CACGAGCGCCATT-ACGATTGC-GGTCAATCCCAGCGAGTTTT 645 consensus_5355#1 TGGTGCTGTCGCGGGACCACGAGCGCCATTTACGATTGCCGGTCAATCCTAGCGAAGTTN 641 *********** ************* ******** ********* ***** ** consensus_5355#0 CCTGCAAACGGCCCATCCGGCGGGAACC-ACCGGACGGAACGGGCGCACAGGAAGGTGGT 704 consensus_5355#1 CCTGCCAACGGCCATCCGGGCGGNAACCCACCNGGAGGCACCGCGG-------------- 687 ***** ******* * ***** **** *** * ** ** * * consensus_5355#0 GGGCAAAATGATGGTAAGGAAGCTTCAGCCGTACAGACACCCGAGCCAGACAAAACTGCT 764 consensus_5355#1 ------------------------------------------------------------ consensus_5355#0 TCACCCCACCACCAGCAGGAACCGGCGGCGCACGGCAATCTGTCCCCTCCGGTAGAGTAT 824 consensus_5355#1 ------------------------------------------------------------ consensus_5355#0 CAGCGCATTTTGAACAATTACATTCAAAAGGGCCGCCGAAAGCTGGAAGCTAGCTCGTAC 884 consensus_5355#1 ------------------------------------------------------------ consensus_5355#0 TCCAAGATGAAAGCGTCCTGCCCGACCGGGGACCGATGGACGGCATCGGCACGACTATCT 944 consensus_5355#1 ------------------------------------------------------------ consensus_5355#0 ACCTCAGCGCTCGAAACGGTAACGGCGTCAATGCAACCGTCCGCTAAGACCACTTCCGGG 1004 consensus_5355#1 ------------------------------------------------------------ consensus_5355#0 TCCAGCCCAGCACCTGTCACTGCCATTGTCCCAAAGTTCGACCACCACAATCCTTCCGCC 1064 consensus_5355#1 ------------------------------------------------------------ consensus_5355#0 TCCATTAGACAAACGGTGAATATGATACAATCATCTCAACTGTCACCGCTCTTCCCATCG 1124 consensus_5355#1 ------------------------------------------------------------ consensus_5355#0 GTACAGCCGGCTGCCCAGAGCCGGACTGCTTCGTCGGTGCTGCTCAAACCGACACGATTG 1184 consensus_5355#1 ------------------------------------------------------------ consensus_5355#0 CATCACTGCCGGGATTGTGGGCTGTCGTACGCGTCCAGCGAGTCGCTGCGGAAGCACTGC 1244 consensus_5355#1 ------------------------------------------------------------ consensus_5355#0 TGCATCATCGCGGAACAGTACCAGTGGCATCTGTG 1279 consensus_5355#1 ----------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||