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Anopheles gambiae
cluster # 5375 cluster # 5375       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5375#0 length = 931 sequences # 2  
consensus_5375#1 length = 568 sequences # 2  

consensusID : consensus_5375#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 931
fasta sequence
                              [AAAATCGAAACAAAACAGTAAAAACGGAACGCCCTTGGAAGGAATTCATATTAAAACAAAAAACAAATTAGCATGTTTCTAAAATAAACGTTTAATGTTTACGACCAAATCAAAACTAAACAAACACGCTAAAGCCCGTGTACGAATTAAAACCGGAAGGAATTAAATAAAGTTAGAGAAGATTAAACTTAGAGAAGAATCCGCTGGGTGGGATGTGTTACAAATGTAAGCCCATAGTGTGTATGTGAGTGTGGTACATGTAGAGTAATGTATATGCGAAATACATCGACTTTAGTCCAGTAATAAATCTAATATAAAATCGAAGAGGGTAAGGAGCATACAAACTTTAAAACAAATACAATTTAAAACCCGCTAACTACTGCTCGTTCATTCAAAAAAGTATAAACATCTAGTATAAACTGATATTATCAATTTAAACTAAACAGACAAAAGGGGATACACAACTCCTTCCGCTAAACCGTAAACAGTAAAACTCTGTTGTAATTATTGTAAACCTTGCATAAACCGATAGCGATAAGCGAGCACCACAGCTAGTGAGGAATGGATCTGGGCCATAAGCCATAATAGCTTTTATCGTTCCGGCGATAGTAACGAAACGTCTCGGCGCGTGTAAACATATGGAGGGTAAAAGGAAACAAATCGATTCTAGAGAAAGGGAAACAGTAAGTGCGCAGAGCGTAGCAATGCATAGTGAAGAAACTAATTAATTCTGTTATATTCAAACTGATGATAACGATGATGATGTCTTGTACATAACCCTACGAATAATGCACAGAAACAAAGCGTAACAAAACAAGAGAAGGTAACCAAGATAGAAAGAAATGAAATAGAACGAGAGAAAGGTTAAGAAAAAACCAATACAACAAAAATAAACAACCAGATGAAATGAACAATTTGAAATAAAGACGAT]

[+] EMBL BX612666             [AAAATCGAAACAAAACAGTAAAAACGGAACGCCCTTGGAAGGAATTCATATTAAAACAAAAAACAAATTAGCATGTTTCTAAAATAAACGTTTAATGTTTACGACCAAATCAAAACTAAACAAACACGCTAAAGCCCGTGTACGAATTAAAACCGGAAGGAATTAAATAAAGTTAGAGAAGATTAAACTTAGAGAAGAATCCGCTGGGTGGGATGTGTTACAAATGTAAGCCCATAGTGTGTATGTGAGTGTGGTACATGTAGAGTAATGTATATGCGAAATACATCGACTTTAGTCCAGTAATAAATCTAATATAAAATCGAAGAGGGTAAGGAGCATACAAACTTTAAAACAAATACAATTTAAAACCCGCTAACTACTGCTCGTTCATTCAAAAAAGTATAAACATCTAGTATAAACTGATATTATCAATTTAAACTAAACAGACAAAAGGGGATACACAACTCCTTCCGCTAAACCGTAAACAGTAAAACTCTGTTGTAATTATTGTAAACCTTGCATAAACCGATAGCGATAAGCGAGCACCACAGCTAGTGAGGAATGGATCTGGGCCATAAGCCATAATAGCTTTTATCGTTCCGGCGATAGTAACGAAACGTCTCGGCGCGTGTAAACATATGGAGGGTAAAAGGAAACAAATCGATTCTAGAGAAAGGGAAACAGTAAGTGCGCAGAGCGTAGCAATGCATAGTGAAGAAACTAATTAATTCTGTTATATTCAAACTGATGATAACGATGATGATGTCTT                                                                                                                                                                  ]
[+] EMBL BX612378             [                                                                                                                                                                                                                                                                                                                  ATCTAATATAAAATCGAAGAGGTTAAGGAGCATACAAACTTTAAAACAAATACAATTTAAAACCCGCTAACTACTGCTCGTTCATTCAAAAAAGTATAAACATCTAGTATAAACTGATATTATCAATTTAAACTAAACAGACAAAAGGGGATACACAACTCCTTCCGCTAAACCGTAAACAGTAAAACTCTGTTGTAATTATTGTAAACCTTGCATAAACCGATAGCGATAAGCGAGCACCACAGCTAGTGAGGAATGGATCTGGGCCATAAGCCATAATAGCTTTTATCGTTCCGGCGATAGTAACGAAACGTCTCGGCGCGTGTAAACATATGGAGGGTAAAAGGAAACAAATCGATTCTAGAGAAAGGGAAACAGTAAGTGCGCAGAGCGTAGCAATGCATAGTGAAGAAACTAATTAATTCTGTTATATTCAAACTGATGATAACGATGATGATGTCTTGTACATAACCCTACGAATAATGCACAGAAACAAAGCGTAACAAAACAAGAGAAGGTAACCAAGATAGAAAGAAATGAAATAGAACGAGAGAAAGGTTAAGAAAAAACCAATACAACAAAAATAAACAACCAGATGAAATGAACAATTTGAAATAAAGACGAT]


>consensus_5375#0 AAAATCGAAACAAAACAGTAAAAACGGAACGCCCTTGGAAGGAATTCATATTAAAACAAA AAACAAATTAGCATGTTTCTAAAATAAACGTTTAATGTTTACGACCAAATCAAAACTAAA CAAACACGCTAAAGCCCGTGTACGAATTAAAACCGGAAGGAATTAAATAAAGTTAGAGAA GATTAAACTTAGAGAAGAATCCGCTGGGTGGGATGTGTTACAAATGTAAGCCCATAGTGT GTATGTGAGTGTGGTACATGTAGAGTAATGTATATGCGAAATACATCGACTTTAGTCCAG TAATAAATCTAATATAAAATCGAAGAGGGTAAGGAGCATACAAACTTTAAAACAAATACA ATTTAAAACCCGCTAACTACTGCTCGTTCATTCAAAAAAGTATAAACATCTAGTATAAAC TGATATTATCAATTTAAACTAAACAGACAAAAGGGGATACACAACTCCTTCCGCTAAACC GTAAACAGTAAAACTCTGTTGTAATTATTGTAAACCTTGCATAAACCGATAGCGATAAGC GAGCACCACAGCTAGTGAGGAATGGATCTGGGCCATAAGCCATAATAGCTTTTATCGTTC CGGCGATAGTAACGAAACGTCTCGGCGCGTGTAAACATATGGAGGGTAAAAGGAAACAAA TCGATTCTAGAGAAAGGGAAACAGTAAGTGCGCAGAGCGTAGCAATGCATAGTGAAGAAA CTAATTAATTCTGTTATATTCAAACTGATGATAACGATGATGATGTCTTGTACATAACCC TACGAATAATGCACAGAAACAAAGCGTAACAAAACAAGAGAAGGTAACCAAGATAGAAAG AAATGAAATAGAACGAGAGAAAGGTTAAGAAAAAACCAATACAACAAAAATAAACAACCA GATGAAATGAACAATTTGAAATAAAGACGAT



consensusID : consensus_5375#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 568
fasta sequence
                              [CCCGA-GTCAATAGCATGTTTCTAAAAT-AACGTTTATGTTTACGACCAAATCAAAACTAAACAAACACGCTAAAGCCCGTGTACGAATTAAAACCGGAAGGAATTAACATAAAGTTACGAGAAGATTAAACTTAGAGAAGAATCCGCTGGGTGGGATGTGTTACAAATGTAAGCCCAGAGTGTGTATGTGAGTGTGGTGCATGTAGAGTAATGTATATGCGAAATACATCGACTTTAGTCCAGTAATAAATCTAATATAAAATCGAAGAGGGTAAGGAGCATACAAACTTTAAAACAAATACAATTTAAAACCCGCTAACTACTGCTCGTTCATTCAAAA-AAGTATAAACATCTAGTATAAACTGATATTATCAATTTAAACTAAACAGACAAAAGGGGATACACAACTCCTTCCGCTAAACCGTAAACAGTAAAACTCTGTTGTAATTATTGTAAACCTTGCATAAACCGATAGCGATAAGCGAGCACCACAGGTAGTGAGGAATGGATCTGGGCCATCCGCCATAATAGCTTNTATCGTTCCGGCGATAGTAACGAAACGTCTCGGC]

[+] EMBL AL932136             [CCCGA GTCAATAGCATGTTTCTAAAAT AACGTTTATGTTTACGACCAAATCAAAACTAAACAAACACGCTAAAGCCCGTGTACGAATTAAAACCGGAAGGAATTAACATAAAGTTACGAGAAGATTAAACTTAGAGAAGAATCCGCTGGGTGGGATGTGTTACAAATGTAAGCCCAGAGTGTGTATGTGAGTGTGGTGCATGTAGAGTAATGTATATGCGAAATACATCGACTTTAGTCCAGTAATAAATCTAATATAAAATCGAAGAGGGTAAGGAGCATACAAACTTTAAAACAAATACAATTTAAAACCCGCTAACTACTGCTCGTTCATTCAAAA AAGTATAAACATCTAGTATAAACTGATATTATCAATTTAAACTAAACAGACAAAAGGGGATACACAACTCCTTCCGCTAAACCGTAAACAGTAAAACTCTGTTGTAATTATTGTAAACCTTGCATAAACCGATAGCGATAAGCGAGCACCACAGGTAGTGAGGAATGGATCTGGGCCATCCGCCATAATAGCTTNTATCGTTCCGGCGATAGTAACGAAACGTCTCGGC]
[+] EMBL AL933780             [  CGAGGNCAATAGCATGTTTCTAAAATAAACG TTATGTTTACGACCAAATCAAAACTAAACAAACACGCTAAAGCCCGTGTACGAATTAAAACCGGAAGGAATTAA ATAAAGTTA GAGAAGATTAAACTTAGAGAAGAATCCGCTGGGTGGGATGTGTTACAAATGTAAGCCCAGAGTGTGTATGTGAGTGTGGTGCATGTAGAGTAATGTATATGCGAAATACATCGACTTTAGTCCAGTAATAAATCTAATATAAAATCGAAGAGGGTAAGGAGCATACAAACTTTAAAACAAATACAATTTAAAACCCGCTAACTACTGCTCGTTCATTCAAAACAAGTATAAACATCTAGTATAAACTGATATTATCAATTTAAACTAAACAGACAAAAGGGGATACACAACTCCTTCCGCTAAACCGTAAACAGTAAAACTCTGTTGTAATTATTGTAAACCTTGCATAAACCGATAGCGATAAGCGAGCACCACAGGTAGTGAGGAATGGATCTGGGCCATCCGCCATAATAGCTTTTATCGTTCCGGCGATAGT                ]


>consensus_5375#1 CCCGAGTCAATAGCATGTTTCTAAAATAACGTTTATGTTTACGACCAAATCAAAACTAAA CAAACACGCTAAAGCCCGTGTACGAATTAAAACCGGAAGGAATTAACATAAAGTTACGAG AAGATTAAACTTAGAGAAGAATCCGCTGGGTGGGATGTGTTACAAATGTAAGCCCAGAGT GTGTATGTGAGTGTGGTGCATGTAGAGTAATGTATATGCGAAATACATCGACTTTAGTCC AGTAATAAATCTAATATAAAATCGAAGAGGGTAAGGAGCATACAAACTTTAAAACAAATA CAATTTAAAACCCGCTAACTACTGCTCGTTCATTCAAAAAAGTATAAACATCTAGTATAA ACTGATATTATCAATTTAAACTAAACAGACAAAAGGGGATACACAACTCCTTCCGCTAAA CCGTAAACAGTAAAACTCTGTTGTAATTATTGTAAACCTTGCATAAACCGATAGCGATAA GCGAGCACCACAGGTAGTGAGGAATGGATCTGGGCCATCCGCCATAATAGCTTNTATCGT TCCGGCGATAGTAACGAAACGTCTCGGC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5375#0      AAAATCGAAACAAAACAGTAAAAACGGAACGCCCTTGGAAGGAATTCATATTAAAACAAA 60
consensus_5375#1      --------------------------------------------------------CCCG 4
                                                                              *   

consensus_5375#0      AAACAAATTAGCATGTTTCTAAAATAAACGTTTAATGTTTACGACCAAATCAAAACTAAA 120
consensus_5375#1      AGTCAA--TAGCATGTTTCTAAAATAA-CGTTTA-TGTTTACGACCAAATCAAAACTAAA 60
                      *  ***  ******************* ****** *************************

consensus_5375#0      CAAACACGCTAAAGCCCGTGTACGAATTAAAACCGGAAGGAATTAA-ATAAAGTTA-GAG 178
consensus_5375#1      CAAACACGCTAAAGCCCGTGTACGAATTAAAACCGGAAGGAATTAACATAAAGTTACGAG 120
                      ********************************************** ********* ***

consensus_5375#0      AAGATTAAACTTAGAGAAGAATCCGCTGGGTGGGATGTGTTACAAATGTAAGCCCATAGT 238
consensus_5375#1      AAGATTAAACTTAGAGAAGAATCCGCTGGGTGGGATGTGTTACAAATGTAAGCCCAGAGT 180
                      ******************************************************** ***

consensus_5375#0      GTGTATGTGAGTGTGGTACATGTAGAGTAATGTATATGCGAAATACATCGACTTTAGTCC 298
consensus_5375#1      GTGTATGTGAGTGTGGTGCATGTAGAGTAATGTATATGCGAAATACATCGACTTTAGTCC 240
                      ***************** ******************************************

consensus_5375#0      AGTAATAAATCTAATATAAAATCGAAGAGGGTAAGGAGCATACAAACTTTAAAACAAATA 358
consensus_5375#1      AGTAATAAATCTAATATAAAATCGAAGAGGGTAAGGAGCATACAAACTTTAAAACAAATA 300
                      ************************************************************

consensus_5375#0      CAATTTAAAACCCGCTAACTACTGCTCGTTCATTCAAAAAAGTATAAACATCTAGTATAA 418
consensus_5375#1      CAATTTAAAACCCGCTAACTACTGCTCGTTCATTCAAAAAAGTATAAACATCTAGTATAA 360
                      ************************************************************

consensus_5375#0      ACTGATATTATCAATTTAAACTAAACAGACAAAAGGGGATACACAACTCCTTCCGCTAAA 478
consensus_5375#1      ACTGATATTATCAATTTAAACTAAACAGACAAAAGGGGATACACAACTCCTTCCGCTAAA 420
                      ************************************************************

consensus_5375#0      CCGTAAACAGTAAAACTCTGTTGTAATTATTGTAAACCTTGCATAAACCGATAGCGATAA 538
consensus_5375#1      CCGTAAACAGTAAAACTCTGTTGTAATTATTGTAAACCTTGCATAAACCGATAGCGATAA 480
                      ************************************************************

consensus_5375#0      GCGAGCACCACAGCTAGTGAGGAATGGATCTGGGCCATAAGCCATAATAGCTTTTATCGT 598
consensus_5375#1      GCGAGCACCACAGGTAGTGAGGAATGGATCTGGGCCATCCGCCATAATAGCTTNTATCGT 540
                      ************* ************************  ************* ******

consensus_5375#0      TCCGGCGATAGTAACGAAACGTCTCGGCGCGTGTAAACATATGGAGGGTAAAAGGAAACA 658
consensus_5375#1      TCCGGCGATAGTAACGAAACGTCTCGGC-------------------------------- 568
                      ****************************                                

consensus_5375#0      AATCGATTCTAGAGAAAGGGAAACAGTAAGTGCGCAGAGCGTAGCAATGCATAGTGAAGA 718
consensus_5375#1      ------------------------------------------------------------
                                                                                  

consensus_5375#0      AACTAATTAATTCTGTTATATTCAAACTGATGATAACGATGATGATGTCTTGTACATAAC 778
consensus_5375#1      ------------------------------------------------------------
                                                                                  

consensus_5375#0      CCTACGAATAATGCACAGAAACAAAGCGTAACAAAACAAGAGAAGGTAACCAAGATAGAA 838
consensus_5375#1      ------------------------------------------------------------
                                                                                  

consensus_5375#0      AGAAATGAAATAGAACGAGAGAAAGGTTAAGAAAAAACCAATACAACAAAAATAAACAAC 898
consensus_5375#1      ------------------------------------------------------------
                                                                                  

consensus_5375#0      CAGATGAAATGAACAATTTGAAATAAAGACGAT 931
consensus_5375#1      ---------------------------------
                                                       




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)