These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5375#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 931 fasta sequence [AAAATCGAAACAAAACAGTAAAAACGGAACGCCCTTGGAAGGAATTCATATTAAAACAAAAAACAAATTAGCATGTTTCTAAAATAAACGTTTAATGTTTACGACCAAATCAAAACTAAACAAACACGCTAAAGCCCGTGTACGAATTAAAACCGGAAGGAATTAAATAAAGTTAGAGAAGATTAAACTTAGAGAAGAATCCGCTGGGTGGGATGTGTTACAAATGTAAGCCCATAGTGTGTATGTGAGTGTGGTACATGTAGAGTAATGTATATGCGAAATACATCGACTTTAGTCCAGTAATAAATCTAATATAAAATCGAAGAGGGTAAGGAGCATACAAACTTTAAAACAAATACAATTTAAAACCCGCTAACTACTGCTCGTTCATTCAAAAAAGTATAAACATCTAGTATAAACTGATATTATCAATTTAAACTAAACAGACAAAAGGGGATACACAACTCCTTCCGCTAAACCGTAAACAGTAAAACTCTGTTGTAATTATTGTAAACCTTGCATAAACCGATAGCGATAAGCGAGCACCACAGCTAGTGAGGAATGGATCTGGGCCATAAGCCATAATAGCTTTTATCGTTCCGGCGATAGTAACGAAACGTCTCGGCGCGTGTAAACATATGGAGGGTAAAAGGAAACAAATCGATTCTAGAGAAAGGGAAACAGTAAGTGCGCAGAGCGTAGCAATGCATAGTGAAGAAACTAATTAATTCTGTTATATTCAAACTGATGATAACGATGATGATGTCTTGTACATAACCCTACGAATAATGCACAGAAACAAAGCGTAACAAAACAAGAGAAGGTAACCAAGATAGAAAGAAATGAAATAGAACGAGAGAAAGGTTAAGAAAAAACCAATACAACAAAAATAAACAACCAGATGAAATGAACAATTTGAAATAAAGACGAT] [+] EMBL BX612666 [AAAATCGAAACAAAACAGTAAAAACGGAACGCCCTTGGAAGGAATTCATATTAAAACAAAAAACAAATTAGCATGTTTCTAAAATAAACGTTTAATGTTTACGACCAAATCAAAACTAAACAAACACGCTAAAGCCCGTGTACGAATTAAAACCGGAAGGAATTAAATAAAGTTAGAGAAGATTAAACTTAGAGAAGAATCCGCTGGGTGGGATGTGTTACAAATGTAAGCCCATAGTGTGTATGTGAGTGTGGTACATGTAGAGTAATGTATATGCGAAATACATCGACTTTAGTCCAGTAATAAATCTAATATAAAATCGAAGAGGGTAAGGAGCATACAAACTTTAAAACAAATACAATTTAAAACCCGCTAACTACTGCTCGTTCATTCAAAAAAGTATAAACATCTAGTATAAACTGATATTATCAATTTAAACTAAACAGACAAAAGGGGATACACAACTCCTTCCGCTAAACCGTAAACAGTAAAACTCTGTTGTAATTATTGTAAACCTTGCATAAACCGATAGCGATAAGCGAGCACCACAGCTAGTGAGGAATGGATCTGGGCCATAAGCCATAATAGCTTTTATCGTTCCGGCGATAGTAACGAAACGTCTCGGCGCGTGTAAACATATGGAGGGTAAAAGGAAACAAATCGATTCTAGAGAAAGGGAAACAGTAAGTGCGCAGAGCGTAGCAATGCATAGTGAAGAAACTAATTAATTCTGTTATATTCAAACTGATGATAACGATGATGATGTCTT ] [+] EMBL BX612378 [ ATCTAATATAAAATCGAAGAGGTTAAGGAGCATACAAACTTTAAAACAAATACAATTTAAAACCCGCTAACTACTGCTCGTTCATTCAAAAAAGTATAAACATCTAGTATAAACTGATATTATCAATTTAAACTAAACAGACAAAAGGGGATACACAACTCCTTCCGCTAAACCGTAAACAGTAAAACTCTGTTGTAATTATTGTAAACCTTGCATAAACCGATAGCGATAAGCGAGCACCACAGCTAGTGAGGAATGGATCTGGGCCATAAGCCATAATAGCTTTTATCGTTCCGGCGATAGTAACGAAACGTCTCGGCGCGTGTAAACATATGGAGGGTAAAAGGAAACAAATCGATTCTAGAGAAAGGGAAACAGTAAGTGCGCAGAGCGTAGCAATGCATAGTGAAGAAACTAATTAATTCTGTTATATTCAAACTGATGATAACGATGATGATGTCTTGTACATAACCCTACGAATAATGCACAGAAACAAAGCGTAACAAAACAAGAGAAGGTAACCAAGATAGAAAGAAATGAAATAGAACGAGAGAAAGGTTAAGAAAAAACCAATACAACAAAAATAAACAACCAGATGAAATGAACAATTTGAAATAAAGACGAT] consensusID : consensus_5375#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 568 fasta sequence [CCCGA-GTCAATAGCATGTTTCTAAAAT-AACGTTTATGTTTACGACCAAATCAAAACTAAACAAACACGCTAAAGCCCGTGTACGAATTAAAACCGGAAGGAATTAACATAAAGTTACGAGAAGATTAAACTTAGAGAAGAATCCGCTGGGTGGGATGTGTTACAAATGTAAGCCCAGAGTGTGTATGTGAGTGTGGTGCATGTAGAGTAATGTATATGCGAAATACATCGACTTTAGTCCAGTAATAAATCTAATATAAAATCGAAGAGGGTAAGGAGCATACAAACTTTAAAACAAATACAATTTAAAACCCGCTAACTACTGCTCGTTCATTCAAAA-AAGTATAAACATCTAGTATAAACTGATATTATCAATTTAAACTAAACAGACAAAAGGGGATACACAACTCCTTCCGCTAAACCGTAAACAGTAAAACTCTGTTGTAATTATTGTAAACCTTGCATAAACCGATAGCGATAAGCGAGCACCACAGGTAGTGAGGAATGGATCTGGGCCATCCGCCATAATAGCTTNTATCGTTCCGGCGATAGTAACGAAACGTCTCGGC] [+] EMBL AL932136 [CCCGA GTCAATAGCATGTTTCTAAAAT AACGTTTATGTTTACGACCAAATCAAAACTAAACAAACACGCTAAAGCCCGTGTACGAATTAAAACCGGAAGGAATTAACATAAAGTTACGAGAAGATTAAACTTAGAGAAGAATCCGCTGGGTGGGATGTGTTACAAATGTAAGCCCAGAGTGTGTATGTGAGTGTGGTGCATGTAGAGTAATGTATATGCGAAATACATCGACTTTAGTCCAGTAATAAATCTAATATAAAATCGAAGAGGGTAAGGAGCATACAAACTTTAAAACAAATACAATTTAAAACCCGCTAACTACTGCTCGTTCATTCAAAA AAGTATAAACATCTAGTATAAACTGATATTATCAATTTAAACTAAACAGACAAAAGGGGATACACAACTCCTTCCGCTAAACCGTAAACAGTAAAACTCTGTTGTAATTATTGTAAACCTTGCATAAACCGATAGCGATAAGCGAGCACCACAGGTAGTGAGGAATGGATCTGGGCCATCCGCCATAATAGCTTNTATCGTTCCGGCGATAGTAACGAAACGTCTCGGC] [+] EMBL AL933780 [ CGAGGNCAATAGCATGTTTCTAAAATAAACG TTATGTTTACGACCAAATCAAAACTAAACAAACACGCTAAAGCCCGTGTACGAATTAAAACCGGAAGGAATTAA ATAAAGTTA GAGAAGATTAAACTTAGAGAAGAATCCGCTGGGTGGGATGTGTTACAAATGTAAGCCCAGAGTGTGTATGTGAGTGTGGTGCATGTAGAGTAATGTATATGCGAAATACATCGACTTTAGTCCAGTAATAAATCTAATATAAAATCGAAGAGGGTAAGGAGCATACAAACTTTAAAACAAATACAATTTAAAACCCGCTAACTACTGCTCGTTCATTCAAAACAAGTATAAACATCTAGTATAAACTGATATTATCAATTTAAACTAAACAGACAAAAGGGGATACACAACTCCTTCCGCTAAACCGTAAACAGTAAAACTCTGTTGTAATTATTGTAAACCTTGCATAAACCGATAGCGATAAGCGAGCACCACAGGTAGTGAGGAATGGATCTGGGCCATCCGCCATAATAGCTTTTATCGTTCCGGCGATAGT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5375#0 AAAATCGAAACAAAACAGTAAAAACGGAACGCCCTTGGAAGGAATTCATATTAAAACAAA 60 consensus_5375#1 --------------------------------------------------------CCCG 4 * consensus_5375#0 AAACAAATTAGCATGTTTCTAAAATAAACGTTTAATGTTTACGACCAAATCAAAACTAAA 120 consensus_5375#1 AGTCAA--TAGCATGTTTCTAAAATAA-CGTTTA-TGTTTACGACCAAATCAAAACTAAA 60 * *** ******************* ****** ************************* consensus_5375#0 CAAACACGCTAAAGCCCGTGTACGAATTAAAACCGGAAGGAATTAA-ATAAAGTTA-GAG 178 consensus_5375#1 CAAACACGCTAAAGCCCGTGTACGAATTAAAACCGGAAGGAATTAACATAAAGTTACGAG 120 ********************************************** ********* *** consensus_5375#0 AAGATTAAACTTAGAGAAGAATCCGCTGGGTGGGATGTGTTACAAATGTAAGCCCATAGT 238 consensus_5375#1 AAGATTAAACTTAGAGAAGAATCCGCTGGGTGGGATGTGTTACAAATGTAAGCCCAGAGT 180 ******************************************************** *** consensus_5375#0 GTGTATGTGAGTGTGGTACATGTAGAGTAATGTATATGCGAAATACATCGACTTTAGTCC 298 consensus_5375#1 GTGTATGTGAGTGTGGTGCATGTAGAGTAATGTATATGCGAAATACATCGACTTTAGTCC 240 ***************** ****************************************** consensus_5375#0 AGTAATAAATCTAATATAAAATCGAAGAGGGTAAGGAGCATACAAACTTTAAAACAAATA 358 consensus_5375#1 AGTAATAAATCTAATATAAAATCGAAGAGGGTAAGGAGCATACAAACTTTAAAACAAATA 300 ************************************************************ consensus_5375#0 CAATTTAAAACCCGCTAACTACTGCTCGTTCATTCAAAAAAGTATAAACATCTAGTATAA 418 consensus_5375#1 CAATTTAAAACCCGCTAACTACTGCTCGTTCATTCAAAAAAGTATAAACATCTAGTATAA 360 ************************************************************ consensus_5375#0 ACTGATATTATCAATTTAAACTAAACAGACAAAAGGGGATACACAACTCCTTCCGCTAAA 478 consensus_5375#1 ACTGATATTATCAATTTAAACTAAACAGACAAAAGGGGATACACAACTCCTTCCGCTAAA 420 ************************************************************ consensus_5375#0 CCGTAAACAGTAAAACTCTGTTGTAATTATTGTAAACCTTGCATAAACCGATAGCGATAA 538 consensus_5375#1 CCGTAAACAGTAAAACTCTGTTGTAATTATTGTAAACCTTGCATAAACCGATAGCGATAA 480 ************************************************************ consensus_5375#0 GCGAGCACCACAGCTAGTGAGGAATGGATCTGGGCCATAAGCCATAATAGCTTTTATCGT 598 consensus_5375#1 GCGAGCACCACAGGTAGTGAGGAATGGATCTGGGCCATCCGCCATAATAGCTTNTATCGT 540 ************* ************************ ************* ****** consensus_5375#0 TCCGGCGATAGTAACGAAACGTCTCGGCGCGTGTAAACATATGGAGGGTAAAAGGAAACA 658 consensus_5375#1 TCCGGCGATAGTAACGAAACGTCTCGGC-------------------------------- 568 **************************** consensus_5375#0 AATCGATTCTAGAGAAAGGGAAACAGTAAGTGCGCAGAGCGTAGCAATGCATAGTGAAGA 718 consensus_5375#1 ------------------------------------------------------------ consensus_5375#0 AACTAATTAATTCTGTTATATTCAAACTGATGATAACGATGATGATGTCTTGTACATAAC 778 consensus_5375#1 ------------------------------------------------------------ consensus_5375#0 CCTACGAATAATGCACAGAAACAAAGCGTAACAAAACAAGAGAAGGTAACCAAGATAGAA 838 consensus_5375#1 ------------------------------------------------------------ consensus_5375#0 AGAAATGAAATAGAACGAGAGAAAGGTTAAGAAAAAACCAATACAACAAAAATAAACAAC 898 consensus_5375#1 ------------------------------------------------------------ consensus_5375#0 CAGATGAAATGAACAATTTGAAATAAAGACGAT 931 consensus_5375#1 --------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||