These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5379#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 732 fasta sequence [GAATNGCCCGAGGNTTATTGTACAGAGCACCGGCATGACGACGATGGACACGCAGGGCATGGTAGTGCCAAGAAGTCCGGACAGTATCATAAACGAGCTCATATATGAAGGCAAGATCCTGGGTACTATGACTACGATCGGGAAAAATGGCGCCAGATTCGTTGCGGTGCACAACATTGCCGACCGGTTTCACACCGGCTACGGCGATCATCCCGACGAGGCGAAAGCGAATGCCGACGAGCTGGTGCTCAAGCATCTGATCGCACAGAACAGCCTCTCCCACCAGCAGCTTGCCTCGTACGCACTGTACCGGCTCGGCAAGGAATGGCCTACCGTGGCCGTTATCACCTCGAACGTTGAGCAGGGCGATCTGCGGACGAGCTGGACGAACTGTACTGGGACACGCTGCACGGCAAACGTCGTCACCGGTCGCCCGATAGTGTGTGTTCGGAGAGTACGATCACCAGCAAACGACAAAAATATCAAACCGTTTCTGGGACTAATTCGACCCCCACATATCAGGAAACTCCTACGGACCCCGAATTGATACAACCCTACAGCGGGAGTGGGATGGAGCGGCGAAGATCGAAACGGGAGGAAACTGGATCGGTATGTAGCGAAAAAGCCCATAAAGCGTAGCAACTTCCTCCTAATGCGGACGCAAATGCATCCATCGCATACTGTGANGCATTGGNCCGGGCTTCGCATGATGATCGCGGCCNCGACGGTGGA] [+] EMBL AL932343 [GAATNGCCCGAGGNTTATTGTACAGAGCACCGGCATGACGACGATGGACACGCAGGGCATGGTAGTGCCAAGAAGTCCGGACAGTATCATAAACGAGCTCATATATGAAGGCAAGATCCTGGGTACTATGACTACGATCGGGAAAAATGGCGCCAGATTCGTTGCGGTGCACAACATTGCCGACCGGTTTCACACCGGCTACGGCGATCATCCCGACGAGGCGAAAGCGAATGCCGACGAGCTGGTGCTCAAGCATCTGATCGCACAGAACAGCCTCTCCCACCAGCAGCTTGCCTCGTACGCACTGTACCGGCTCGGCAAGGAATGGCCTACCGTGGCCGTTATCACCTCGAACGTTGAGCAGGGCGATCTGCGGACGAGCTGGACGAACTGTACTGGGACACGCTGCACGGCAAACGTCGTCACCGGTCGCCCGATAGTGTGTGTTCGGAGAGTACGATCACCAGCAAACGACAAAAATATCAAACCGTTTCTGGGACTAATTCGACCCCCACATATCAGGAAACTCCTACGGACCCCGAATTGATACAACCCTACAGCGGGAGTGGGATGGAGCGGCGAAGATCGAAACGGGAGGAAACTGGATCGGTATGTAGCGAAAAAGCCCATAAAGCGTAGCAACTTCCTCCTAATGCGGACGCAAATGCATCCATCGCATACTGTGANGCATTGGNCCGGGCTTCGCATGATGATCGCGGCCNCGACGGTGGA] consensusID : consensus_5379#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 705 fasta sequence [CCGCGGCAATTGTATTGAAACTGTTATTGTTCAGAGCACCGGCATGGCGACGATGGATACGCAGGGCATGGTAGTGCCAAAAAGTCCGGACAGTATCATAAACGAGCTCATATATGAAGGCAAGATCCTGGGTACTATGACTACGATCGGGAAAAATGGCGCCAGATTCGTTGCGGTGCACAACATTGCCGACCGGTTTCACACCGGCTACGGCGATCATCCCGACGAAGCGAAAGCGAATGCCGACGAGCTGGTGCTCAAGCATCTGATCGCACAGAACAGCCTCTCCCACCAGCAGCTTGCCTCGTACGCACTGTACCGGCTCGGCAAGGAATGGCCTACCGTGGCCGTTATCACCTCGAACGTTGAGCAGGGCGATCTGCGGACGAGGCTGGACGAACTGTACTGGGACACGCTGCACGGCAAACGTCGTCACCGGTCGCCCG-ATAGTGTGTGTTCGGAGAGTACGATCACCAGCAAACGACAAAAACATCAAACCGTTGCTGGGACTAATTCGACCCCCACATATCAGGAAACTCCTAC-GGACCCCGAATTGATACAACCTACAGCG-GGAGTGGATGGAGCGGCGACGATCGAAACGGAGG-AAACTGGATCGGTATGTAGCGAAAAGCCCTCGGTATGTAGCGAAAAGCCCATAAAGCGTGGCACACTTCCTCCTAATGCGGACGAAATGCATCCATCGAT] [+] EMBL BM608087 [CCGCGGCAATTGTATTGAAACTGTTATTGTTCAGAGCACCGGCATGGCGACGATGGATACGCAGGGCATGGTAGTGCCAAAAAGTCCGGACAGTATCATAAACGAGCTCATATATGAAGGCAAGATCCTGGGTACTATGACTACGATCGGGAAAAATGGCGCCAGATTCGTTGCGGTGCACAACATTGCCGACCGGTTTCACACCGGCTACGGCGATCATCCCGACGAAGCGAAAGCGAATGCCGACGAGCTGGTGCTCAAGCATCTGATCGCACAGAACAGCCTCTCCCACCAGCAGCTTGCCTCGTACGCACTGTACCGGCTCGGCAAGGAATGGCCTACCGTGGCCGTTATCACCTCGAACGTTGAGCAGGGCGATCTGCGGACGAGGCTGGACGAACTGTACTGGGACACGCTGCACGGCAAACGTCGTCACCGGTCGCCCG ATAGTGTGTGTTCGGAGAGTACGATCACCAGCAAACGACAAAAACATCAAACCGTTGCTGGGACTAATTCGACCCCCACATATCAGGAAACTCCTAC GGACCCCGAATTGATACAACCTACAGCG GGAGTGGATGGAGCGGCGACGATCGAAACGGAGG AAACTGGATCGGTATGTAGCGAAAAGCCCTCGGTATGTAGCGAAAAGCCCATAAAGCGTGGCACACTTCCTCCTAATGCGGACGAAATGCATCCATCGAT] [+] EMBL BM611194 [ ccgGTTCAGAGCACCGGCATGGCGACGATGGATACGCAGGGCATGGTAGTGCCAAAAAGTCCGGACAGTATCATAAACGAGCTCATATATGAAGGCAAGATCCTGGGTACTATGACTACGATCGGGAAAAATGGCGCCAGATTCGTTGCGGTGCACAACATTGCCGACCGGTTTCACACCGGCTACGGCGATCATCCCGACGAAGCGAAAGCGAATGCCGACGAGCTGGTGCTCAAGCATCTGATCGCACAGAACAGCCTCTCCCACCAGCAGCTTGCCTCGTACGCACTGTACCGGCTCGGCAAGGAATGGCCTACCGTGGCCGTTATCACCTCGAACGTTGAGCAGGGCGATCTGCGGACGAGGCTGGACGAACTGTACTGGGACACGCTGCACGGCAAACGTCGTCACCGGTCGCCCGAATAGTGTGTGTTCGGAGAGTACGATCACCAGCAAACGACAAAAACATCAAACCGTTGCTGGGACTAATTCGACCCCCACATATCAGGAAACTCCTACGGGACCCCGAATTGATACAACCTACAGCGTGGAGTGGATGGAGCGGCGACGATCGAAACGGAGGAAAACTGGATCGGTATGTAGCGAAAAGCCCTCGGTATGTAGCGAAAAGCC ] [+] EMBL BM597547 [ ccGAGCGCCGGCATGACGACGATGGACACGCAGGGCATGGTAGTGCCAAAAAGTCCGGACAGTATCATAAACGAGCTCATATATGAAGGCAAGATCCTAGGTACTATGACTACGATCGGGAAAAATGGCGCCAGATTCGTTGCGGTGCACAACATTGCCGACCGGTTTCACACCGGCTACGGCGATCATCCCGACGAGGCGAAAGCGAATGCCGACGAGCTGGTGCTCAAGCATCTGATCGCACAGAACAGCCTGTCCCACCAGCAGCTTGCCTCGTACGCACTGTACCGGCTCGGCAAGGAATGGCCTACCGTGGCCGTTATCACCTCGAACGTTGAGCAGGGCGATCTGCGGACGAGGCTGGACGAACTGTACTGGGACACGCTGCACGGCAAACGTCGTCACCGGTCGCCCG ATAGTGTGTGTTCGGAGAGTACGATCACCAGCAAACGACAAAAATATCAAACCGTTTCTGGGACTAATTCGACCCCCACATATCAGGAAACTCCTAC GGACCCCGAATTGATACAACCTACAGCG GGAGTGGATGGAGCGGCGACGATCGAAACGGAGG AAACTGGATCGGTATGTAGCGAAAAGCCCTCGGTATGTAGCGAAAAGCCCATAAAGCGTAGCACACTTCCTCCTAATGCGGAC ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5379#0 ------GAATNGC-CCGAGGNT--TATTGTACAGAGCACCGGCATGACGACGATGGACAC 51 consensus_5379#1 CCGCGGCAATTGTATTGAAACTGTTATTGTTCAGAGCACCGGCATGGCGACGATGGATAC 60 *** * ** * ****** *************** ********** ** consensus_5379#0 GCAGGGCATGGTAGTGCCAAGAAGTCCGGACAGTATCATAAACGAGCTCATATATGAAGG 111 consensus_5379#1 GCAGGGCATGGTAGTGCCAAAAAGTCCGGACAGTATCATAAACGAGCTCATATATGAAGG 120 ******************** *************************************** consensus_5379#0 CAAGATCCTGGGTACTATGACTACGATCGGGAAAAATGGCGCCAGATTCGTTGCGGTGCA 171 consensus_5379#1 CAAGATCCTGGGTACTATGACTACGATCGGGAAAAATGGCGCCAGATTCGTTGCGGTGCA 180 ************************************************************ consensus_5379#0 CAACATTGCCGACCGGTTTCACACCGGCTACGGCGATCATCCCGACGAGGCGAAAGCGAA 231 consensus_5379#1 CAACATTGCCGACCGGTTTCACACCGGCTACGGCGATCATCCCGACGAAGCGAAAGCGAA 240 ************************************************ *********** consensus_5379#0 TGCCGACGAGCTGGTGCTCAAGCATCTGATCGCACAGAACAGCCTCTCCCACCAGCAGCT 291 consensus_5379#1 TGCCGACGAGCTGGTGCTCAAGCATCTGATCGCACAGAACAGCCTCTCCCACCAGCAGCT 300 ************************************************************ consensus_5379#0 TGCCTCGTACGCACTGTACCGGCTCGGCAAGGAATGGCCTACCGTGGCCGTTATCACCTC 351 consensus_5379#1 TGCCTCGTACGCACTGTACCGGCTCGGCAAGGAATGGCCTACCGTGGCCGTTATCACCTC 360 ************************************************************ consensus_5379#0 GAACGTTGAGCAGGGCGATCTGCGGACGAG-CTGGACGAACTGTACTGGGACACGCTGCA 410 consensus_5379#1 GAACGTTGAGCAGGGCGATCTGCGGACGAGGCTGGACGAACTGTACTGGGACACGCTGCA 420 ****************************** ***************************** consensus_5379#0 CGGCAAACGTCGTCACCGGTCGCCCGATAGTGTGTGTTCGGAGAGTACGATCACCAGCAA 470 consensus_5379#1 CGGCAAACGTCGTCACCGGTCGCCCGATAGTGTGTGTTCGGAGAGTACGATCACCAGCAA 480 ************************************************************ consensus_5379#0 ACGACAAAAATATCAAACCGTTTCTGGGACTAATTCGACCCCCACATATCAGGAAACTCC 530 consensus_5379#1 ACGACAAAAACATCAAACCGTTGCTGGGACTAATTCGACCCCCACATATCAGGAAACTCC 540 ********** *********** ************************************* consensus_5379#0 TACGGACCCCGAATTGATACAACCCTACAGCGGGAGTGGGATGGAGCGGCGAAGATCGAA 590 consensus_5379#1 TACGGACCCCGAATTGATACAACC-TACAGCGGGAGTGG-ATGGAGCGGCGACGATCGAA 598 ************************ ************** ************ ******* consensus_5379#0 ACGGGAGGAAACTGGATCGGTATGTAGCGAAAAAGCCCATAAAGCGTAGCAACTTCCTCC 650 consensus_5379#1 ACGG-AGGAAACTGGATCGGTATGTAGCGAAAA-GCCCTCGGTATGTAGCGAAAAGCCCA 656 **** **************************** **** ***** * * * consensus_5379#0 TAATGCG-GACGCAAATGCATCCATCGCATACTGTGANGCATTGGNCCGGGCTTCGCATG 709 consensus_5379#1 TAAAGCGTGGCACACTTCCTCCTAATGCGGAC-GAAATGCATCCATCGAT---------- 705 *** *** * * ** * * * * ** ** * * **** * consensus_5379#0 ATGATCGCGGCCNCGACGGTGGA 732 consensus_5379#1 ----------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||