These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5380#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 725 fasta sequence [CCGGTTGAAAACGAGCGACGAAACTGTTGTTTCAGAAAGAGAAGAGTGTCCACAACAATTTCCGGAATTAATTGAACAGAATGTCCCGGAGGAAATAGCTCCCACGGTTCAACCACAATTTATGGACATCGTACAAATAAGCGAAGAATACATCCACACGGACGACGAGGCGGGTGTGGTGTTTCGGGAAAAGCGAATGATTACCGCACCATCCACGATTCCCACCATTCAGGTAACATCGGAAATAGCTGAGCCGGTTTCAAACGTCCCGGGAAAAGGTCCACCATCAACAGCAAGACGGAATCCGTCACTTACAAGCCTTTCTACAGCGGTCACGTTGCCTCCGCTTGATTACGACACGGACGCGCTGCGCGCCGAGCTGACCACGTTCGGTGAACCACCCGGCCCGATAACGAGTAGCACCAAAAAACTGTACTTAAGAAAGCTGGTCAAATTGCGACGCCATCCAGAACGATTGGAGAACGGAAGTGGAGCCAAAGCAAACCCTCAGCCAACTTTCTCCGTCGAGCTGGGCGCAACGGTAAGAAAGGAGGATGTGTTCGAGGCGATCCTAGACCATCAGAGTTTGGAGGACGAGATGGCTTCCGAATTCCAGTCCAGCTCCACCACCAAGGTGGCGCGCAACCTGCGCGAGGGACACCTGAAGAAGAGCTTCGTCTATCTGCTGCTCGATCCGCGCGTCAGCGAAAACCTGTCCGCCCAGC] [+] EMBL BM578319 [CCGGTTGAAAACGAGCGACGAAACTGTTGTTTCAGAAAGAGAAGAGTGTCCACAACAATTTCCGGAATTAATTGAACAGAATGTCCCGGAGGAAATAGCTCCCACGGTTCAACCACAATTTATGGACATCGTACAAATAAGCGAAGAATACATCCACACGGACGACGAGGCGGGTGTGGTGTTTCGGGAAAAGCGAATGATTACCGCACCATCCACGATTCCCACCATTCAGGTAACATCGGAAATAGCTGAGCCGGTTTCAAACGTCCCGGGAAAAGGTCCACCATCAACAGCAAGACGGAATCCGTCACTTACAAGCCTTTCTACAGCGGTCACGTTGCCTCCGCTTGATTACGACACGGACGCGCTGCGCGCCGAGCTGACCACGTTCGGTGAACCACCCGGCCCGATAACGAGTAGCACCAAAAAACTGTACTTAAGAAAGCTGGTCAAATTGCGACGCCATCCAGAACGATTGGAGAACGGAAGTGGAGCCAAAGCAAACCCTCAGCCAACTTTCTCCGTCGAGCTGGGCGCAACGGTAAGAAAGGAGGATGTGTTCGAGGCGATCCTAGACCATCAGAGTTTGGAGGACGAGATGGCTTCCGAATTCCAGTCCAGCTCCACCACCAAGGTGGCGCGCAACCTGCGCGAGG ] [+] EMBL BM575854 [ ccgCACAATTTATGGATATCGTACAAATAAGCGAAGAATACATCCACACGGACGACGAGGCGGGTGTGGTGTTTCGGGAAAAGCGAATGATCACCGCACCATCCACCATTCCCACCATTCAGGTAACATCGGAAATAGCTGAGCCGGTTTCAAACGACCCGGGAAAGGGTCCACCATCCACAGCAAGACGGAATCCGTCGCTTACAAGCCTTTCTACAGCGGTCACGTTGCCACCGCTTGATTACGACACGGACGCGCTGCGCGCCGAGCTGACCACGTTCGGTGAACCACCCGGCCCGATAACGAGTAGCACCAAAAAACTGTACTTAAGAAAGCTGGTCAAATTGCGACGCCATCCAGAACGATTGGAGAACGTAAATGGAGCCAAAGCAAACCCTCAGCCAACTTTCTCCGTCGAGCTGGGCGCAACGGTAAGAAAGGAGGATGTGTTCGAGGCGATCCTAGACCATCAGAGTTTGGAGGACGAGATGGCTTCCGAATTCCAGTCCAGCTCCACCACCAAGGTGGCGCGCAACCTGCGCGAGGGACACCTGAAGAAGAGCTTCGTCTATCTGCTGCTCGATCCGCGCGTCAGCGAAAACCTGTCCGCCCAGC] consensusID : consensus_5380#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 722 fasta sequence [GCAGAATCGGCACGAGGCCGTCGCTTACAAGCCTTTCTACAGCGGTCACGTTGCCTCCGCTTGATTACGACACGGACGCGCTGCGCGCCGAGCTGACCACGTTCGGTGAACCACCCGGCCCGATAACGAGTAGCACCAAAAAACTGTACTTAAGAAAGCTGGTCAAATTGCGGCGCCATCCAGAACGATTGGAGAACGGAAGTGGAGCCAAAGCAAAACCTCAGCCAACTTTCTCCGTCGAGCTGGGCGCAACGGTAGAAAGGAGGATGTGTTCGAGGCGATCCTAGACCATCAGAGTTTGGAGGACGAGATGGCTTCCGAATTCCAGTCCAGCTCCACCACCAAGGTGGCGCGCAACCTGCGCGAGGGACACCTGAAGAAGAGCTTCGTCTATCTGCTGCTCGATCCGCGCGTCAGCGAAAACCTGTCCGCCCAGCGGGACCATCTAGCGGCACACGAGCTGTGGAAGCGCTTCCTCAGCGCCGTGTTTTACGTCGGAAAGGGTAAAAGCAGCCGCCCGTACTGCCATCTGTACGATGCGATTAAGGCTGCACCACCAGCGGGAGAGCGCTGGCTGCGAAAGCATCCGCCGGGNAGCAGACGGGTGGGGCAGGTTTTACCCGGTCGAAGGGCGGAANGAAATTTATTCTTTCCNAATTGCAGCGAAAGCAAAGGCATTGCCNGGCACGCGCGGTAGGACGGAAACTAATTCTGCGGCAGCC] [+] EMBL BX467407 [GCAGAATCGGCACGAGGCCGTCGCTTACAAGCCTTTCTACAGCGGTCACGTTGCCTCCGCTTGATTACGACACGGACGCGCTGCGCGCCGAGCTGACCACGTTCGGTGAACCACCCGGCCCGATAACGAGTAGCACCAAAAAACTGTACTTAAGAAAGCTGGTCAAATTGCGGCGCCATCCAGAACGATTGGAGAACGGAAGTGGAGCCAAAGCAAAACCTCAGCCAACTTTCTCCGTCGAGCTGGGCGCAACGGTAGAAAGGAGGATGTGTTCGAGGCGATCCTAGACCATCAGAGTTTGGAGGACGAGATGGCTTCCGAATTCCAGTCCAGCTCCACCACCAAGGTGGCGCGCAACCTGCGCGAGGGACACCTGAAGAAGAGCTTCGTCTATCTGCTGCTCGATCCGCGCGTCAGCGAAAACCTGTCCGCCCAGCGGGACCATCTAGCGGCACACGAGCTGTGGAAGCGCTTCCTCAGCGCCGTGTTTTACGTCGGAAAGGGTAAAAGCAGCCGCCCGTACTGCCATCTGTACGATGCGATTAAGGCTGCACCACCAGCGGGAGAGCGCTGGCTGCGAAAGCATCCGCCGGGNAGCAGACGGGTGGGGCAGGTTTTACCCGGTCGAAGGGCGGAANGAAATTTATTCTTTCCNAATTGCAGCGAAAGCAAAGGCATTGCCNGGCACGCGCGGTAGGACGGAAACTAATTCTGCGGCAGCC] consensusID : consensus_5380#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 525 fasta sequence [CAGAATCGNCACGAGGCTCGATCCGCGCGTCAGCGAAAACCTGTCCGCCCAGCGGGACCATCTACGGCACACGAGCTGTGGAAGCGCTTCCTCAGCGCCGTGTTTTACGTCGGAAAGGGTAAAAGCAGCCGCCCGTACTGCCATCTGTACGATGCGATTAAGCTGCACCACCAGCGGGAGAGCGCTGGCTGCGAAAACATCCGCCGGGAGCAGACGGGTGGTGCAGATTTTACCGTCGAGGCGGAAGAAATAATCTTCCAATGCAGCGAAGCAAGCATGGCGGTGGCAGGAGGAAATAATCTGCGCAAGCGAGGCCAGTCCGGCAAGGGGTCGGGACGCAAGCAGCAGGCAGTGGACAGTGCGAAGCTAAACCGCATCATCGACATCTGGGCCGCCGGCAAGGGTGTCGTGTGTCTGCACGTGTTCCACAACATCATGCCGGCCGAGGCGTACACGCGCGAGGCGGCCATTATCGATGCGTACGGTGTGCAGAACCTGACGAATCTGAAGCGGGGCGACTACTAC] [+] EMBL AL932495 [CAGAATCGNCACGAGGCTCGATCCGCGCGTCAGCGAAAACCTGTCCGCCCAGCGGGACCATCTACGGCACACGAGCTGTGGAAGCGCTTCCTCAGCGCCGTGTTTTACGTCGGAAAGGGTAAAAGCAGCCGCCCGTACTGCCATCTGTACGATGCGATTAAGCTGCACCACCAGCGGGAGAGCGCTGGCTGCGAAAACATCCGCCGGGAGCAGACGGGTGGTGCAGATTTTACCGTCGAGGCGGAAGAAATAATCTTCCAATGCAGCGAAGCAAGCATGGCGGTGGCAGGAGGAAATAATCTGCGCAAGCGAGGCCAGTCCGGCAAGGGGTCGGGACGCAAGCAGCAGGCAGTGGACAGTGCGAAGCTAAACCGCATCATCGACATCTGGGCCGCCGGCAAGGGTGTCGTGTGTCTGCACGTGTTCCACAACATCATGCCGGCCGAGGCGTACACGCGCGAGGCGGCCATTATCGATGCGTACGGTGTGCAGAACCTGACGAATCTGAAGCGGGGCGACTACTAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5380#0 CCGGTTGAAAACGAGCGACGAAACTGTTGTTTCAGAAAGAGAAGAGTGTCCACAACAATT 60 consensus_5380#1 ------------------------------------------------------------ consensus_5380#2 ------------------------------------------------------------ consensus_5380#0 TCCGGAATTAATTGAACAGAATGTCCCGGAGGAAATAGCTCCCACGGTTCAACCACAATT 120 consensus_5380#1 ------------------------------------------------------------ consensus_5380#2 ------------------------------------------------------------ consensus_5380#0 TATGGACATCGTACAAATAAGCGAAGAATACATCCACACGGACGACGAGGCGGGTGTGGT 180 consensus_5380#1 ------------------------------------------------------------ consensus_5380#2 ------------------------------------------------------------ consensus_5380#0 GTTTCGGGAAAAGCGAATGATTACCGCACCATCCACGATTCCCACCATTCAGGTAACATC 240 consensus_5380#1 ------------------------------------------------------------ consensus_5380#2 -----------------CAGAATCGNCACGAGGCTCGATCCGCGCGTCAGCGAAAACCTG 43 consensus_5380#0 GGAAATAGCTGAGCCGGTTTCAAACGTCCCGGGAAAAGGTCCACCATCAACAGCAAGACG 300 consensus_5380#1 ----------------------------------------------GCAGAATCGGCACG 14 consensus_5380#2 TCCGCCCAGCGGGACCATCTACGGCACACGAGCTGTGGAAGCGCT-TCCTCAGCGCCGTG 102 * * * * consensus_5380#0 GAATCCGTCACTTACAAGCCTTTCTACAGCGGTCACGTTGCCTCCGCTTGATTACGACAC 360 consensus_5380#1 -AGGCCGTCGCTTACAAGCCTTTCTACAGCGGTCACGTTGCCTCCGCTTGATTACGACAC 73 consensus_5380#2 TTTTACGTCG---GAAAGGGTAAAAGCAGCCGCC-CGT-ACTGCCATCTG--TACGATGC 155 **** *** * **** * * *** * ** ** ***** * consensus_5380#0 GGACGCGCTGCGCGCCGAGCTGACCA-CGTTCGGTG---AACCACCCGGCCCGATAACGA 416 consensus_5380#1 GGACGCGCTGCGCGCCGAGCTGACCA-CGTTCGGTG---AACCACCCGGCCCGATAACGA 129 consensus_5380#2 GATTAAGCTGCACCACCAGCGGGAGAGCGCTGGCTGCGAAAACATCCG--CCGGGAGCAG 213 * ***** * * *** * * ** * * ** ** ** *** *** * * consensus_5380#0 GTAGCACCAAAAAACTGTACTTAAGAAAGCTGGTCAAATTGCGACGCCATCCAGAACGAT 476 consensus_5380#1 GTAGCACCAAAAAACTGTACTTAAGAAAGCTGGTCAAATTGCGGCGCCATCCAGAACGAT 189 consensus_5380#2 ACGGGTGGTGCAGATTTTACCGTCGAG-GCGGAAGAAATAATCTTCCAATGCAG--CGAA 270 * * * * *** ** ** * **** * ** *** *** consensus_5380#0 TGGAGAACGGAAGTGGAGCCAAAGCAAACCCTCAGCCAACTTTCTCCGTCGAGCTGGGCG 536 consensus_5380#1 TGGAGAACGGAAGTGGAGCCAAAGCAAAACCTCAGCCAACTTTCTCCGTCGAGCTGGGCG 249 consensus_5380#2 GCAAGCATGGCGGTGGCAGGAGGAAATAATCTGCGCAAGCGAGGCCAGTCCGGCAAGGGG 330 ** * ** **** * * * ** ** * * * *** ** ** * consensus_5380#0 CAACGGTAAGAA-AGGAGGATGTGTTCGAGGCGATCCTAGACC-----ATCAGAGTTTGG 590 consensus_5380#1 CAACGGTA-GAA-AGGAGGATGTGTTCGAGGCGATCCTAGACC-----ATCAGAGTTTGG 302 consensus_5380#2 TCGGGACGCAAGCAGCAGGCAGTGGACAGTGCGAAGCTAAACCGCATCATCGACATCTGG 390 * * ** *** *** * **** *** *** *** * *** consensus_5380#0 AG-GACGAGATGGCTTCCGAATTCCAGTCCAGCTCCACCACCAAGGTGGCGCGCAACCTG 649 consensus_5380#1 AG-GACGAGATGGCTTCCGAATTCCAGTCCAGCTCCACCACCAAGGTGGCGCGCAACCTG 361 consensus_5380#2 GCCGCCGGCAAGGGTGTCGTGTGTCTGCACGTGTTCCACAACATCATGCCGGCCGAGGCG 450 * ** * ** * ** * * * * * * ** ** ** ** * * * consensus_5380#0 CGCGAGGGACACCTGAAGAAGAGCTTCGTCTATCTGCTGCTCGATCCG-CGCGTCAGCGA 708 consensus_5380#1 CGCGAGGGACACCTGAAGAAGAGCTTCGTCTATCTGCTGCTCGATCCG-CGCGTCAGCGA 420 consensus_5380#2 TACACGCGCGAGGCGGCCATTATCGATGCGTACGGTGTGCAGAACCTGACGAATCTGAAG 510 * * * * * * * * * ** *** * * * ** ** * consensus_5380#0 AAACCTGTCCGCCCAGC------------------------------------------- 725 consensus_5380#1 AAACCTGTCCGCCCAGCGGGACCATCTAGCGGCACACGAGCTGTGGAAGCGCTTCCTCAG 480 consensus_5380#2 CGGGGCGACTACTAC--------------------------------------------- 525 * * * consensus_5380#0 ------------------------------------------------------------ consensus_5380#1 CGCCGTGTTTTACGTCGGAAAGGGTAAAAGCAGCCGCCCGTACTGCCATCTGTACGATGC 540 consensus_5380#2 ------------------------------------------------------------ consensus_5380#0 ------------------------------------------------------------ consensus_5380#1 GATTAAGGCTGCACCACCAGCGGGAGAGCGCTGGCTGCGAAAGCATCCGCCGGGNAGCAG 600 consensus_5380#2 ------------------------------------------------------------ consensus_5380#0 ------------------------------------------------------------ consensus_5380#1 ACGGGTGGGGCAGGTTTTACCCGGTCGAAGGGCGGAANGAAATTTATTCTTTCCNAATTG 660 consensus_5380#2 ------------------------------------------------------------ consensus_5380#0 ------------------------------------------------------------ consensus_5380#1 CAGCGAAAGCAAAGGCATTGCCNGGCACGCGCGGTAGGACGGAAACTAATTCTGCGGCAG 720 consensus_5380#2 ------------------------------------------------------------ consensus_5380#0 -- consensus_5380#1 CC 722 consensus_5380#2 -- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||