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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5393#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 694 fasta sequence
[ATTAAAACAAACATATTTCTACGCATTATTACAAGCAAGCGTTGAGCAAACAAACAAATGTTGATTCGTCCCGCGTACCGTGGATAAAGTTTACTACAAAAAAAATACGCAAACAATGGCAAACACACACACATACACACAAAGAGACGTAACATACGAGAGAAAAAAAACACACACACACACAAACACATCGTATGACATTATCCGAAAAGGGCACACGTACACACCACACTACACAAAGCAAACTACAGTTATCACAAAGCGTATAAGGCAAATGTAAGGCATCCGCTATCGAATATTCCCAAGTGTTTGTGTACTTTTAAAAACGGTTTTCAGCCAAACCGCAACGCTGCACGTACGTACATTACGCGCACATGCAGATTTGAGAAACAGTGTAGCTCTATCCTTCATCAATATCTAAACGATCATTTACGCAAAAACACAAATTTTCTGTATCTGTTGGGCATCACCGCACGCCGGTTACTATTCCTTGCAATCCGAAAAAAACCCCTCTCCAATTTCCCACCCCTTTTGTTCACACCACTCTGCCCCCACAATTGTGCTACCAGTTTTTCAGTGTACTATTACTGTTCAAAGACCTCACCTACTGTTGCATCACTCACAGAATGCGCCACAAATTTAAAGCAATATCACGCTTTTGGGCGGACACACCAATATTGTGCCCTCTATTCGA]
[+] EMBL BM602560 [ATTAAAACAAACATATTTCTACGCATTATTACAAGCAAGCGTTGAGCAAACAAACAAATGTTGATTCGTCCCGCGTACCGTGGATAAAGTTTACTACAAAAAAAATACGCAAACAATGGCAAACACACACACATACACACAAAGAGACGTAACATACGAGAGAAAAAAAACACACACACACACAAACACATCGTATGACATTATCCGAAAAGGGCACACGTACACACCACACTACACAAAGCAAACTACAGTTATCACAAAGCGTATAAGGCAAATGTAAGGCATCCGCTATCGAATATTCCCAAGTGTTTGTGTACTTTTAAAAACGGTTTTCAGCCAAACCGCAACGCTGCACGTACGTACATTACGCGCACATGCAGATTTGAGAAACAGTGTAGCTCTATCCTTCATCAATATCTAAACGATCATTTACGCAAAAACACAAATTTTCTGTATCTGTTGGGCATCACCGCACGCCGGTTACTATTCCTTGCAATCCGAAAAAAACCCCTCTCCAATTTCCCACCCCTTTTGTTCACACCACTCTGCCCCCACAATTGTGCTACCAGTTTTTCAGTGTACTATTACTGTTCAAAGACCTCACCTACTGTTGCATCACTCACAGAATGCGCCACAAATTTAAAGCAATATCACGCTTTTGGGCGGACACACCAATATTGTGCCCTCTATTCGA]
[+] EMBL BX610319 [ AAAAACACAAATTTTCTGTATCTGTTGGGCATCACCGCACGCCGGTTACTATTCCTTGCAATCCGAAAAAAACCCCTCTCCAATTTCCCACCCCTTTTGTTCACACCACTCTGCCCCCACAATTGTGCTACCAGTTTTTCAGTGTACTATTACTGTTCAAAGACCTCACCTACTGTTGCATCACTCACAGAATGCGCCACAAATTTAAAGCAATATCACGCTTTTGGGCGGACACACCAATATTGTGCCCTCTATTCGA]
consensusID : consensus_5393#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 610 fasta sequence
[GATCGCCCGAGGTTAAAAACGGTTTCAGCCAAACCGCAACGCTGCACGTACGTACATTACGCGCACATGCAGATTTGAGAAACAGTGTAGCTCTATCCTTCATCAATATCTAAACGATCATTTACGCAAAAACACAAATTTTCTGTATCTGTTGGGCATCACCGCACGCCGGTTACTATTCCTTGCAATCCGAAAAAAACCCCTCTCCAATTTCCCACCCCTTTTGTTCACACCACTCTGGCCCCCACAATTGTGCTACCAGTTTTTCAGTGTACTATTACTGTTCAAAGACCTCACTACTGTTGCATCACTCACAGAATGCGCCACAAATTTAAAGCAATATCACGCTTTTGGGCGGACACACCAATATTGTGCCCTCTATTCGATACTCTCATCTTCCTGCACACCTGTTTGTCCCTTTCGCATTGTTTCGCTCCTCGACAGGAGAGGCATAAACGTAAAACAACAAGAACATGTAACAAAACGTTAAACTATCGATAAGCAAAACAGATCCTCCAAAAGAAGCAAACGATAGCACGCAATAACAAAACGGGGGCAACAAACATACAAACAAACGAAATGAACCGAACAGCACGTTCAATCATCGCGC]
[+] EMBL AL932715 [GATCGCCCGAGGTTAAAAACGGTTTCAGCCAAACCGCAACGCTGCACGTACGTACATTACGCGCACATGCAGATTTGAGAAACAGTGTAGCTCTATCCTTCATCAATATCTAAACGATCATTTACGCAAAAACACAAATTTTCTGTATCTGTTGGGCATCACCGCACGCCGGTTACTATTCCTTGCAATCCGAAAAAAACCCCTCTCCAATTTCCCACCCCTTTTGTTCACACCACTCTGGCCCCCACAATTGTGCTACCAGTTTTTCAGTGTACTATTACTGTTCAAAGACCTCACTACTGTTGCATCACTCACAGAATGCGCCACAAATTTAAAGCAATATCACGCTTTTGGGCGGACACACCAATATTGTGCCCTCTATTCGATACTCTCATCTTCCTGCACACCTGTTTGTCCCTTTCGCATTGTTTCGCTCCTCGACAGGAGAGGCATAAACGTAAAACAACAAGAACATGTAACAAAACGTTAAACTATCGATAAGCAAAACAGATCCTCCAAAAGAAGCAAACGATAGCACGCAATAACAAAACGGGGGCAACAAACATACAAACAAACGAAATGAACCGAACAGCACGTTCAATCATCGCGC]
consensusID : consensus_5393#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 444 fasta sequence
[ATAAGGCAAATGTAAGGCATCCGCTATCGAATATTCCCAAGTGTTTGTGTACTTTTAAAAACGGTTTTCAGCCAAACCGCAACGCTGCACGTACGTACATTACGCGCACATGCAGATTTGAGAAACAGTGTAGCTCTATCCTTCATCAATATCTAAACGATCATTTACGCAATCCGAAAAAAACCCCTCTCCAATTTCCCACCCCTTTTGTTCACACCACTCTGCCCCCACAATTGTGCTACCAGTTTTTCAGTGTACTATTACTGTTCAAAGACCTCACCTACTGTTGCATCACTCACAGAATGCGCCACAAATTTAAAGCAATATCACGCTTTTGGGCGGACACACCAATATTGTGCCCTCTATTCGATACTCTCATCTTCCTGCACACCTGTTTGTCCCTTTCGCATTGTTTCGCTCCTCGACAGGAGAGGCATAAACGTA]
[+] EMBL BX618699 [ATAAGGCAAATGTAAGGCATCCGCTATCGAATATTCCCAAGTGTTTGTGTACTTTTAAAAACGGTTTTCAGCCAAACCGCAACGCTGCACGTACGTACATTACGCGCACATGCAGATTTGAGAAACAGTGTAGCTCTATCCTTCATCAATATCTAAACGATCATTTACGCAATCCGAAAAAAACCCCTCTCCAATTTCCCACCCCTTTTGTTCACACCACTCTGCCCCCACAATTGTGCTACCAGTTTTTCAGTGTACTATTACTGTTCAAAGACCTCACCTACTGTTGCATCACTCACAGAATGCGCCACAAATTTAAAGCAATATCACGCTTTTGGGCGGACACACCAATATTGTGCCCTCTATTCGATACTCTCATCTTCCTGCACACCTGTTTGTCCCTTTCGCATTGTTTCGCTCCTCGACAGGAGAGGCATAAACGTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5393#1 ------------------------------------------------------------
consensus_5393#2 ------------------------------------------------------------
consensus_5393#0 ATTAAAACAAACATATTTCTACGCATTATTACAAGCAAGCGTTGAGCAAACAAACAAATG 60
consensus_5393#1 ------------------------------------------------------------
consensus_5393#2 ------------------------------------------------------------
consensus_5393#0 TTGATTCGTCCCGCGTACCGTGGATAAAGTTTACTACAAAAAAAATACGCAAACAATGGC 120
consensus_5393#1 ------------------------------------------------------------
consensus_5393#2 ------------------------------------------------------------
consensus_5393#0 AAACACACACACATACACACAAAGAGACGTAACATACGAGAGAAAAAAAACACACACACA 180
consensus_5393#1 ------------------------------------------------------------
consensus_5393#2 ------------------------------------------------------------
consensus_5393#0 CACAAACACATCGTATGACATTATCCGAAAAGGGCACACGTACACACCACACTACACAAA 240
consensus_5393#1 ------------------------------------------------------------
consensus_5393#2 -------------------------ATAAGGCAAATGTAAGGCATCCGCTATCGAATATT 35
consensus_5393#0 GCAAACTACAGTTATCACAAAGCGTATAAGGCAAATGTAAGGCATCCGCTATCGAATATT 300
consensus_5393#1 -------GATCGCCCGAGGTTAAAAACGGTTT-CAGCCAAACCGCAACGCTGCACGTACG 52
consensus_5393#2 CCCAAGTGTTTGTGTACTTTTAAAAACGGTTTTCAGCCAAACCGCAACGCTGCACGTACG 95
consensus_5393#0 CCCAAGTGTTTGTGTACTTTTAAAAACGGTTTTCAGCCAAACCGCAACGCTGCACGTACG 360
* * * ************* ***************************
consensus_5393#1 TACATTACGCGCACATGCAGATTTGAGAAACAGTGTAGCTCTATCCTTCATCAATATCTA 112
consensus_5393#2 TACATTACGCGCACATGCAGATTTGAGAAACAGTGTAGCTCTATCCTTCATCAATATCTA 155
consensus_5393#0 TACATTACGCGCACATGCAGATTTGAGAAACAGTGTAGCTCTATCCTTCATCAATATCTA 420
************************************************************
consensus_5393#1 AACGATCATTTACGCAAAAACACAAATTTTCTGTATCTGTTGGGCATCACCGCACGCCGG 172
consensus_5393#2 AACGATCATTTACGCAA------------------------------------------- 172
consensus_5393#0 AACGATCATTTACGCAAAAACACAAATTTTCTGTATCTGTTGGGCATCACCGCACGCCGG 480
*****************
consensus_5393#1 TTACTATTCCTTGCAATCCGAAAAAAACCCCTCTCCAATTTCCCACCCCTTTTGTTCACA 232
consensus_5393#2 ----------------TCCGAAAAAAACCCCTCTCCAATTTCCCACCCCTTTTGTTCACA 216
consensus_5393#0 TTACTATTCCTTGCAATCCGAAAAAAACCCCTCTCCAATTTCCCACCCCTTTTGTTCACA 540
********************************************
consensus_5393#1 CCACTCTGGCCCCCACAATTGTGCTACCAGTTTTTCAGTGTACTATTACTGTTCAAAGAC 292
consensus_5393#2 CCACTCTG-CCCCCACAATTGTGCTACCAGTTTTTCAGTGTACTATTACTGTTCAAAGAC 275
consensus_5393#0 CCACTCTG-CCCCCACAATTGTGCTACCAGTTTTTCAGTGTACTATTACTGTTCAAAGAC 599
******** ***************************************************
consensus_5393#1 CTCAC-TACTGTTGCATCACTCACAGAATGCGCCACAAATTTAAAGCAATATCACGCTTT 351
consensus_5393#2 CTCACCTACTGTTGCATCACTCACAGAATGCGCCACAAATTTAAAGCAATATCACGCTTT 335
consensus_5393#0 CTCACCTACTGTTGCATCACTCACAGAATGCGCCACAAATTTAAAGCAATATCACGCTTT 659
***** ******************************************************
consensus_5393#1 TGGGCGGACACACCAATATTGTGCCCTCTATTCGATACTCTCATCTTCCTGCACACCTGT 411
consensus_5393#2 TGGGCGGACACACCAATATTGTGCCCTCTATTCGATACTCTCATCTTCCTGCACACCTGT 395
consensus_5393#0 TGGGCGGACACACCAATATTGTGCCCTCTATTCGA------------------------- 694
***********************************
consensus_5393#1 TTGTCCCTTTCGCATTGTTTCGCTCCTCGACAGGAGAGGCATAAACGTAAAACAACAAGA 471
consensus_5393#2 TTGTCCCTTTCGCATTGTTTCGCTCCTCGACAGGAGAGGCATAAACGTA----------- 444
consensus_5393#0 ------------------------------------------------------------
consensus_5393#1 ACATGTAACAAAACGTTAAACTATCGATAAGCAAAACAGATCCTCCAAAAGAAGCAAACG 531
consensus_5393#2 ------------------------------------------------------------
consensus_5393#0 ------------------------------------------------------------
consensus_5393#1 ATAGCACGCAATAACAAAACGGGGGCAACAAACATACAAACAAACGAAATGAACCGAACA 591
consensus_5393#2 ------------------------------------------------------------
consensus_5393#0 ------------------------------------------------------------
consensus_5393#1 GCACGTTCAATCATCGCGC 610
consensus_5393#2 -------------------
consensus_5393#0 -------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||