These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5403#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 714 fasta sequence [CCGCATTTTTAGACGAAAGTACAAACCTTAAATCACTTAAATTTCCAAATTATTTTCCAGCCATGGCGTCTGCAGTGGCCGAGCCGGGCCGAATAGTTCCTACGGCAGAAGAGCAAGCGGAAGAGCGACGAAAATTTCGATACCGAGCCGGTGCATTCCTAGCAGCGGTCGGTGCAACGTCAGCAGTAGCAGGATTCAGCAAAGCAATCATGTCGGCGAAAAAATCTGACCCAAAGTACTTCGACAAAGGGCTGCACGGTAGCTTGGCGCTGCACGAGGCCGGCACCAGCCTGGCACTGCGAGCCCTCGGCTGGGGCACACTGTACGCCATCCTTGGCACCGGTACGATTTGCTTCGGAATATGGAAGCTGAGCGGCGCAAAGAATATGGAAGAGTTCCGGCAAGCGGTTGGCAGTGCTTTCCCTCGCGTCCCACGGAACGATCCACCGACCAGTCGGACCGAGTTCGAAGGATTGACCGATCTGATGCAGTACCTGTCAACGTGGGGCAAGGAGGAGAAAGCCGTTACTTCCCTAGCGACCACACAGCCTAGTCAGTAAGCCGGTCTTAGCAGGCAAGCAAGCGGGAAATCAGCCGCACACTGTTAATTTGAAGCCAAACATGTAAATATAGACGCTTCTGGTAGTCAAATAATAATGAGAATACATTTATATTGTGCGAT---ATGATCCTTTAAATAATCAGTAAACAAAATTA] [+] EMBL BM625380 [CCGCATTTTTAGACGAAAGTACAAACCTTAAATCACTTAAATTTCCAAATTATTTTCCAGCCATGGCGTCTGCAGTGGCCGAGCCGGGCCGAATAGTTCCTACGGCAGAAGAGCAAGCGGAAGAGCGACGAAAATTTCGATACCGAGCCGGTGCATTCCTAGCAGCGGTCGGTGCAACGTCAGCAGTAGCAGGATTCAGCAAAGCAATCATGTCGGCGAAAAAATCTGACCCAAAGTACTTCGACAAAGGGCTGCACGGTAGCTTAGCGCTGCACGAGGCCGGCACCAGCCTGGCGCTGCGAGCCCTCGGCTGGGGCACACTGTACGCCATCCTTGGCACCGGTACGATTTGCTTCGGAATATGGAAGCTGAGCGGCGCAAAGAATATGGAAGAGTTCCGGCAAGCGGTTGGCAGTGCTTTCCCTCGCGTCCCACGGAACGATCCACCGACCAGTCGGACCGAGTTCGAAGGATTGACCGATCTGATGCAGTACCTGTCAACGTGGGGCAAGGAGGAGAAAGCCGTTACTTCCCTAGCGACCACACAGCCTAGTCAGTAAGCCGGTCTTAGCAGGCAAGCAAGCGGGAAATCAGCCGCACACTGTTAATTTGAAGCCAAACATGTAAATATACACGCTT ] [+] EMBL BM591134 [ ccgAAATTAAATAACA CCATGGCGTCTGCAGTGGCCGAGCCGGGCCGAATAGTTCCTACGGCAGAAGAGCAAGCGGAAGAGCGACGAAAATTTCGATACCGAGCCGGTGCATTCCTAGCAGCGGTCGGTGCAACGTCAGCAGTAGCAGGATTCAGCAAAGCAATCATGTCGGCGAAAAAATCTGACCCAAAGTACTTCGACAAAGGGCTGCACGGTAGCTTGGCGCTGCACGAGGCCGGCACCAGCCTGGCACTGCGAGCCCTCGGCTGGGGCACACTGTACGCCATCCTTGGCACCGGTACGATTTGCTTCGGAATATGGAAGCTGAGCGGCGCAAAGAATATGGAAGAGTTCCGGCAAGCGGTTGGCAGTGCTTTCCCTCGCGTCCCACGGAACGATCCACCGACCAGTCGGACCGAGTTCGAAGGATTGACCGATCTGATGCAGTACCTGTCAACGCGGGGCAAGGAGGAGAAAGCCGTTACTTCCCTAGCGACCACACAGCCTAGTCAGTAAGCCGGTCTTAGCAGGCAAGCAAGCGGGAAATCAGCTGCACACTGTTAATTTGAAGCCCAACATGTAAATATAGACGCTTCTGGTAGTCAAATAATAATGAGAATACATTTATATTGTGCGAT ATGATCCTTT ] [+] EMBL BX622350 [ CCGGACAGTTCCCACCCTGGAAGAGCAAGCGGAAAAGCGACGGAAATTTCGATACCGAGCCGGTGCATTCCTAGCAGCGGTCGGTGCAACGTCAGCAGTAGCAGGATTCAGCAAAGCAATCATGTCGGCGAAAAAATCTGACCCAAAGTACTTCGACAAAGGGCTGCACGGTAGCTTGGCGCTGCACGAGGCCGGCACCAGCCTGGCACTGCGAGCCCTCGGCTGGGGCACACTGTACGCCATCCTTGGCACCGGTACGATTTGCTTCGGAATATGGAAGCTGAGCGGCGCAAAGAATATGGAAGAGTTCCGGCAAGCGGTTGGTAGTGCTTTCCCTCGCGTCCCACGGAACGATCCACCGACCAGTCGGACCGAGTTCGAAGGATTGACCGATCTGATGCAGTACCTGTCAACGTGGGGCAAGGAGGAGAAAGCCGTTACTTCCCTAGCGACCACACAGCCTAGTCAGTAAGCCGGTCTTAGCAGGCAAGCAAGCGGGAAATCAGCGGCACACTGTTAATTTGAAGCCAAACATGTAAATATAGACGCTTCTGGTAGTCAAATAATAATAAGAATACATTTATTTTGTGCGATATGATGATCCTTTAAATAATCAGTAAACAAAATTA] consensusID : consensus_5403#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 531 fasta sequence [AATCGCCGAGGNTNACACATGGCATCTACAGTGGAACAACCTGGGCCGGACAGTTCCCACCCTGGAAGAGCAAGCGGAAAAGCGACGGAAATTTCGATACCGAGCCGGTGCATTCCTACAGCGGTCGGTGCAACGTCAGCAGTAGCAGGATTCAGCAAAGCAATCATGTCGGCGAAAAAATCTGACCCAAAGTACTTCGACAAAGTGGCTGCACGGTAGCTTGGCGCTGCACGAGTGCCGGCACCAGCCTGGCACTGCGAGCCCTCGGCTGGGGCACACTGTACGCCATCCTTGGCACCGGTACGATTTGCTTCGGAATATGGAAGCTGAGCGGCGCAAAGAATATGGAAGAGTTCCGGCAAGCGGTTGGTAGTGCTTTCCCTCGCGTCCCACGGAACGATCCACCGACAGTCTGGACCGAGTTCGAAGGATTTGACCGATCTGATGCAGTACCTGTCAACGTGGGGCAAGGCACGGAGAAAGCCGTTACTTCCCTAGCGACCACACAGCTANTCAGTAAGCCGGTCTTAC] [+] EMBL AL932879 [AATCGCCGAGGNTNACACATGGCATCTACAGTGGAACAACCTGGGCCGGACAGTTCCCACCCTGGAAGAGCAAGCGGAAAAGCGACGGAAATTTCGATACCGAGCCGGTGCATTCCTACAGCGGTCGGTGCAACGTCAGCAGTAGCAGGATTCAGCAAAGCAATCATGTCGGCGAAAAAATCTGACCCAAAGTACTTCGACAAAGTGGCTGCACGGTAGCTTGGCGCTGCACGAGTGCCGGCACCAGCCTGGCACTGCGAGCCCTCGGCTGGGGCACACTGTACGCCATCCTTGGCACCGGTACGATTTGCTTCGGAATATGGAAGCTGAGCGGCGCAAAGAATATGGAAGAGTTCCGGCAAGCGGTTGGTAGTGCTTTCCCTCGCGTCCCACGGAACGATCCACCGACAGTCTGGACCGAGTTCGAAGGATTTGACCGATCTGATGCAGTACCTGTCAACGTGGGGCAAGGCACGGAGAAAGCCGTTACTTCCCTAGCGACCACACAGCTANTCAGTAAGCCGGTCTTAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5403#0 CCGCATTTTTAGACGAAAGTACAAACCTTAAATCACTTAAATTTCCAAATTATTTTCCAG 60 consensus_5403#1 ---------------------------------------AATCGCCGAGG-----NTNAC 16 *** ** * * consensus_5403#0 CCATGGCGTCTGCAGTGGC-CGAGCCGGGCCGAATAGTTCCTACGGCAGAAGAGCAAGCG 119 consensus_5403#1 ACATGGCATCTACAGTGGAACAACCTGGGCCGGACAGTTCCCACCCTGGAAGAGCAAGCG 76 ****** *** ****** * * * ****** * ****** ** ************ consensus_5403#0 GAAGAGCGACGAAAATTTCGATACCGAGCCGGTGCATTCCTAGCAGCGGTCGGTGCAACG 179 consensus_5403#1 GAAAAGCGACGGAAATTTCGATACCGAGCCGGTGCATTCCTA-CAGCGGTCGGTGCAACG 135 *** ******* ****************************** ***************** consensus_5403#0 TCAGCAGTAGCAGGATTCAGCAAAGCAATCATGTCGGCGAAAAAATCTGACCCAAAGTAC 239 consensus_5403#1 TCAGCAGTAGCAGGATTCAGCAAAGCAATCATGTCGGCGAAAAAATCTGACCCAAAGTAC 195 ************************************************************ consensus_5403#0 TTCGACAAAG-GGCTGCACGGTAGCTTGGCGCTGCACGAG-GCCGGCACCAGCCTGGCAC 297 consensus_5403#1 TTCGACAAAGTGGCTGCACGGTAGCTTGGCGCTGCACGAGTGCCGGCACCAGCCTGGCAC 255 ********** ***************************** ******************* consensus_5403#0 TGCGAGCCCTCGGCTGGGGCACACTGTACGCCATCCTTGGCACCGGTACGATTTGCTTCG 357 consensus_5403#1 TGCGAGCCCTCGGCTGGGGCACACTGTACGCCATCCTTGGCACCGGTACGATTTGCTTCG 315 ************************************************************ consensus_5403#0 GAATATGGAAGCTGAGCGGCGCAAAGAATATGGAAGAGTTCCGGCAAGCGGTTGGCAGTG 417 consensus_5403#1 GAATATGGAAGCTGAGCGGCGCAAAGAATATGGAAGAGTTCCGGCAAGCGGTTGGTAGTG 375 ******************************************************* **** consensus_5403#0 CTTTCCCTCGCGTCCCACGGAACGATCCACCGACCAGTCGGACCGAGTTCGAAGGATT-G 476 consensus_5403#1 CTTTCCCTCGCGTCCCACGGAACGATCCACCGACAGTCTGGACCGAGTTCGAAGGATTTG 435 ********************************** ******************* * consensus_5403#0 ACCGATCTGATGCAGTACCTGTCAACGTGGGGCAAGGA--GGAGAAAGCCGTTACTTCCC 534 consensus_5403#1 ACCGATCTGATGCAGTACCTGTCAACGTGGGGCAAGGCACGGAGAAAGCCGTTACTTCCC 495 ************************************* ******************** consensus_5403#0 TAGCGACCACACAGCCTAGTCAGTAAGCCGGTCTTAGCAGGCAAGCAAGCGGGAAATCAG 594 consensus_5403#1 TAGCGACCACACAGC-TANTCAGTAAGCCGGTCTTAC----------------------- 531 *************** ** ***************** consensus_5403#0 CCGCACACTGTTAATTTGAAGCCAAACATGTAAATATAGACGCTTCTGGTAGTCAAATAA 654 consensus_5403#1 ------------------------------------------------------------ consensus_5403#0 TAATGAGAATACATTTATATTGTGCGATATGATCCTTTAAATAATCAGTAAACAAAATTA 714 consensus_5403#1 ------------------------------------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||