These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5408#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1181 fasta sequence [GCGATCAGACCCTCAAACGCTTGTAGGAGCGTGTACTGAAGTGCGTGTGTTTGTGCAGTGTGTGTGTGAAAAAAGCTCTCACTTTCGTGTGTGCAACCAACCTAAGAACTGCCTGTCGGAAAGGAAGCACCGCTCACGGGACACCATGACGTCCGGGAGACGCAGCTGGATGGTGCTGGCAGGGGTGCTGCTAGTGCTAGCGGTGATTGCCGCCCCGGTTGGTAGCTATTCGCCGTTCAAGAAGGGACCGCAGCACGGTTCGTTTACTCGCACTGGCTCACCGGCAGCAGCTAATGGCGGAACTGTGCGCGAGCGGGAGCGGGAGCGCGAACGGGAACGCGAACAGGAACGGCTGGCGACACCGTACGTGGGCCCGCTGGTTGGGCTGGAGGCGGGCGGTAAGCGGGCTGCCAACGACTTCCTGGAGGACGTCGGCAAGAATGTGTTTGACACCGTTTACCACTGGAAGGTGATGGACTTCATGTACCCCTCGCTGCAGCTGCGTAATAACGCCATCCGCACACGTGAATTCATCCCGGAAAACAATCTGCCCCTCGGTGTGGATCGGTTCCGAGACCGACTGTTCATTACGACGCCCCGCTGGAACCCGGGTGTGCCGGCCACTCTTTCCTATCTGCCCCTGCCGGCCCAGGACCGCAGCCAGCCGCTGATGCCGTACCCCGACTGGAGCTACCACACGTCCCCGCGCAATCCCGACTGCTCCAAGATGATGTCCGTGTACCGCATCCAGGTGGATGAGTGTGATCGCCTCTGGGTGCTGGATGCGGGCGTTACCGACACGCTGACCAACCTGCAGCAGGTCTGCCCGCCGAAGATTATGGCGTTCGATCTGCAGAACGACGAGCTGCTGTTCACGTACGTCCTGCCCGAGGAGCAGGTGAAGGAGGACTCGCTGCACACCAACATCGTGGTGGACGTGCGCGACGGCCAGTGCGAGGATGCGTTCGCGTACGTAGCGGACGTGTGGCGCAACGGCATCACCGTGTTCGACATGCGCAAGTTCAAGAGCTGGCGCACGACGAACCATCTGTACAACCCGAACCCGCTGGCCAGCGACTACAACTACCAGGATCTGAACTTCCAGTGGTCGGACGGTGTGTTCGGCATGTCGCTCGCGCCCGTCCACCGCTCCGGCGATCGGATGCTGCTCTTCCACCCGA] [+] EMBL BX623390 [GCGATCAGACCCTCAAACGCTTGTAGGAGCGTGTACTGAAGTGCGTGTGTTTGTGCAGTGTGTGTGTGAAAAAAGCTCTCACTTTCGTGTGTGCAACCAACCTAAGAACTGCCTGTCGGAAAGGAAGCACCGCTCACGGGACACCATGACGTCCGGGAGACGCAGCTGGATGGTGCTGGCAGGGGTGCTGCTAGTGCTAGCGGTGATTGCCGCCCCGGTTGGTAGCTATTCGCCGTTCAAGAAGGGACCGCAGCACGGTTCGTTTACTCGCACTGGCTCACCGGCAGCAGCTAATGGCGGAACTGTGCGCGAGCGGGAGCGGGAGCGCGAACGGGAACGCGAACAGGAACGGCTGGCGACACCGTACGTGGGCCCGCTGGTTGGGCTGGAGGCGGGCGGTAAGCGGGCTGCCAACGACTTCCTGGAGGACGTCGGCAAGAATGTGTTTGACACCGTTTACCACTGGAAGGTGATGGACTTCATGTACCCCTCGCTGCAGCTGCGTAATAACGCCATCCGCACACGTGAATTCATCCCGGAAAACAATCTGCCCCTCGGTGTGGATCGGTTCCGAGACCGACTGTTCATTACGACGCCCCGCTGGAACCCGGGTGTGCCGGCCACTCTTTCCTATCTGCCCCTGCCGGCCCAGGACCGCAGCCAGCCGCTGATGCCGTACCCCGACTGGAGCTACCACACGTCCCCGCGCAATCCCGACTGCTCCAAGATGATGTCCGTGTACCGCATCCAGGTGGATGAGTGTGATCGCCTCTGGGTGCTGGATGCGGGCGTTACCGACACGCTGACCA ] [+] EMBL BX623852 [ CGGGTGTGCCGGCCACTCTTTCCTATCTGCCCCTGCCGGCCCAGGACCGCAGCCAGCCGCTGATGCCGTACCCCGACTGGAGCTACCACACGTCCCCGCGCAATCCCGACTGCTCCAAGATGATGTCCGTGTACCGCATCCAGGTGGATGAGTGTGATCGCCTCTGGGTGCTGGATGCGGGCGTTACCGACACGCTGACCAACCTGCAGCAGGTCTGCCCGCCGAAGATTATGGCGTTCGATCTGCAGAACGACGAGCTGCTGTTCACGTACGTCCTGCCCGAGGAGCAGGTGAAGGAGGACTCGCTGCACACCAACATCGTGGTGGACGTGCGCGACGGCCAGTGCGAGGATGCGTTCGCGTACGTAGCGGACGTGTGGCGCAACGGCATCACCGTGTTCGACATGCGCAAGTTCAAGAGCTGGCGCACGACGAACCATCTGTACAACCCGAACCCGCTGGCCAGCGACTACAACTACCAGGATCTGAACTTCCAGTGGTCGGACGGTGTGTTCGGCATGTCGCTCGCGCCCGTCCACCGCTCCGGCGATCGGATGCTGCTCTTCCACCCGA] consensusID : consensus_5408#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 613 fasta sequence [ACGTCGGCCAGAATGTGTCTGACACCGTTTAACACTGGAAGGTGATGGACTTCATGTACCCCTCGCTGCAGCTGCGTAATAACGCCATCCGCACACGTGAATTCATCCCGGAAAACAATCTGCCCCTCGGTGTGGATCGGTTCCGAGACCGACTGTTCATTACGACGCCCCGCTGGAACCCGGGTGTGCCGGCCACTCTTTCCTATCTGCCCCTGCCGGCCCAGGACCGCAGCCAGTCCGCTGATGCCGTACCCCGACTGGAGCTACCACACGTCCCCGCGCAATCCCGACTGCTCCAAGATGATGTCCGGGTTGTACCGCATCCAGGTGGATGAGTGTGATCGCCTCTGGGGGTGCTGGATGCGGGGCCCGGTTACCGAAANACCCCACAAAAAACCCCGGGCCTGAAACCCAACCTGCAGCAGGTCTGCCCGCCGAAGATTATGGCGTTCGATCTGCAGAACGACGAGCTGCTGTTCACGTACGTCCTGCCCGAGGAGCAGGTGAAGGAGGACTCGCTGCACACCAACATCGTGGTGGACGTTGCGCGACGGCCAGTGCGAGATGCGTTCGCGTACGTAGCGGACGTGTGGCNGCAACGGCATCACCGGTC] [+] EMBL AL933629 [ACGTCGGCCAGAATGTGTCTGACACCGTTTAACACTGGAAGGTGATGGACTTCATGTACCCCTCGCTGCAGCTGCGTAATAACGCCATCCGCACACGTGAATTCATCCCGGAAAACAATCTGCCCCTCGGTGTGGATCGGTTCCGAGACCGACTGTTCATTACGACGCCCCGCTGGAACCCGGGTGTGCCGGCCACTCTTTCCTATCTGCCCCTGCCGGCCCAGGACCGCAGCCAGTCCGCTGATGCCGTACCCCGACTGGAGCTACCACACGTCCCCGCGCAATCCCGACTGCTCCAAGATGATGTCCGGGTTGTACCGCATCCAGGTGGATGAGTGTGATCGCCTCTGGGGGTGCTGGATGCGGGGCCCGGTTACCGAAANACCCCACAAAAAACCCCGGGCCTGAAACCCAACCTGCAGCAGGTCTGCCCGCCGAAGATTATGGCGTTCGATCTGCAGAACGACGAGCTGCTGTTCACGTACGTCCTGCCCGAGGAGCAGGTGAAGGAGGACTCGCTGCACACCAACATCGTGGTGGACGTTGCGCGACGGCCAGTGCGAGATGCGTTCGCGTACGTAGCGGACGTGTGGCNGCAACGGCATCACCGGTC] consensusID : consensus_5408#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 189 fasta sequence [CTCAGCCAGAATTGCCCCCGAGGTTTAACGCGAAACAAGGGGAAAACTGTGGCTTTGNGACAACGTACGTTGGCCCGCTGGGGTTTGGGGGCCTTGGAGAGCGGGCGGTAAGCGGGCTGGCAACGAAACTTCCTGGAGGACGTCGGAAGAATGTGTTTGACACCGTTTACCACTGGAAGNGTTGATGGA] [+] EMBL AL933129 [CTCAGCCAGAATTGCCCCCGAGGTTTAACGCGAAACAAGGGGAAAACTGTGGCTTTGNGACAACGTACGTTGGCCCGCTGGGGTTTGGGGGCCTTGGAGAGCGGGCGGTAAGCGGGCTGGCAACGAAACTTCCTGGAGGACGTCGGAAGAATGTGTTTGACACCGTTTACCACTGGAAGNGTTGATGGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5408#0 GCGATCAGACCCTCAAACGCTTGTAGGAGCGTGTACTGAAGTGCGTGTGTTTGTGCAGTG 60 consensus_5408#1 ------------------------------------------------------------ consensus_5408#2 ------------------------------------------------------------ consensus_5408#0 TGTGTGTGAAAAAAGCTCTCACTTTCGTGTGTGCAACCAACCTAAGAACTGCCTGTCGGA 120 consensus_5408#1 ------------------------------------------------------------ consensus_5408#2 ------------------------------------------------------------ consensus_5408#0 AAGGAAGCACCGCTCACGGGACACCATGACGTCCGGGAGACGCAGCTGGATGGTGCTGGC 180 consensus_5408#1 ------------------------------------------------------------ consensus_5408#2 ------------------------------------------------------------ consensus_5408#0 AGGGGTGCTGCTAGTGCTAGCGGTGATTGCCGCCCCGGTTGGTAGCTATTCGCCGTTCAA 240 consensus_5408#1 ------------------------------------------------------------ consensus_5408#2 ------------------------------------------------------------ consensus_5408#0 GAAGGGACCGCAGCACGGTTCGTTTACTCGCACTGGCTCACCGGCAGCAGCTAATGGCGG 300 consensus_5408#1 ------------------------------------------------------------ consensus_5408#2 ------------------------------------------------------------ consensus_5408#0 AACTGTGCGCGAGCGGGAGCGGGAGCGCGAACGGGAACGCGAACAGGAACGGCTGGCGAC 360 consensus_5408#1 ------------------------------------------------------------ consensus_5408#2 ------------------------------------------------------------ consensus_5408#0 ACCGTACGTGGGCCCGCTGGTTGGGCTGGAGGCGGGCGGTAAGCGGGCTGCCAACGACTT 420 consensus_5408#1 ------------------------------------------------------------ consensus_5408#2 ------------------------------------------------------------ consensus_5408#0 CCTGGAGGACGTCGGCAAGAATGTGTTTGACACCGTTTACCACTGGAAGGTGATGGACTT 480 consensus_5408#1 --------ACGTCGGCCAGAATGTGTCTGACACCGTTTAACACTGGAAGGTGATGGACTT 52 consensus_5408#2 ------------------------------------------------------------ consensus_5408#0 CATGTACCCCTCGCTGCAGCTGCGTAATAACGCCATCCGCACACGTGAATTCATCCCGGA 540 consensus_5408#1 CATGTACCCCTCGCTGCAGCTGCGTAATAACGCCATCCGCACACGTGAATTCATCCCGGA 112 consensus_5408#2 ------------------------------------------------------------ consensus_5408#0 AAACAATCTGCCCCTCGGTGTGGATCGGTTCCGAGACCGACTGTTCATTACGACGCCCCG 600 consensus_5408#1 AAACAATCTGCCCCTCGGTGTGGATCGGTTCCGAGACCGACTGTTCATTACGACGCCCCG 172 consensus_5408#2 ------------------------------------------------------------ consensus_5408#0 CTGGAACCCGGGTGTGCCGGCCACTCTTTCCTATCTGCCCCTGCCGGCCCAGGACCGCAG 660 consensus_5408#1 CTGGAACCCGGGTGTGCCGGCCACTCTTTCCTATCTGCCCCTGCCGGCCCAGGACCGCAG 232 consensus_5408#2 ------------------------------------------------------------ consensus_5408#0 CCAG-CCGCTGATGCCGTACCCCGACTGGAGCTACCACACGTCCCCGCGCAATCCCGACT 719 consensus_5408#1 CCAGTCCGCTGATGCCGTACCCCGACTGGAGCTACCACACGTCCCCGCGCAATCCCGACT 292 consensus_5408#2 ------------------------------------------------------------ consensus_5408#0 GCTCCAAGATGATGTCCG---TGTACCGCATCCAGGTGGATGAGTGTGATCGCCTCTGGG 776 consensus_5408#1 GCTCCAAGATGATGTCCGGGTTGTACCGCATCCAGGTGGATGAGTGTGATCGCCTCTGGG 352 consensus_5408#2 ------------------------------------------------------------ consensus_5408#0 --TGCTGGATGCGGGC----GTTACCGACACGC--------------------TGA---C 807 consensus_5408#1 GGTGCTGGATGCGGGGCCCGGTTACCGAAANACCCCACAAAAAACCCCGGGCCTGAAACC 412 consensus_5408#2 ------------------------------------------------------------ consensus_5408#0 CAACCTGCAGCAGGTCTGCCCGCCGAAGATTATGGCGTTCGATCTGCAGAACGACGAGCT 867 consensus_5408#1 CAACCTGCAGCAGGTCTGCCCGCCGAAGATTATGGCGTTCGATCTGCAGAACGACGAGCT 472 consensus_5408#2 ----CTCAGCCAGAATTGCCC-CCGAGGTTTAACGCGAAACAAGGGGAAAACTGTGGCTT 55 ** *** ***** **** * *** *** * * * *** * * consensus_5408#0 GCTGTTCACGTACGT---CCTGCCCGAGGA-GCAGGTGAAGGAGGACTCGCTGCACACCA 923 consensus_5408#1 GCTGTTCACGTACGT---CCTGCCCGAGGA-GCAGGTGAAGGAGGACTCGCTGCACACCA 528 consensus_5408#2 TGNGACAACGTACGTTGGCCCGCTGGGGTTTGGGGGCCTTGGAGAGCGGGCGGTAAGCGG 115 * ******** ** ** * * * ** **** * ** * * * consensus_5408#0 ACATCGTGGTGGACGT-GCGCGACGGCCAGTGCGAGGATGCGTTCGCGTACGTAGCGGAC 982 consensus_5408#1 ACATCGTGGTGGACGTTGCGCGACGGCCAGTGCGAG-ATGCGTTCGCGTACGTAGCGGAC 587 consensus_5408#2 GC-TGGCAACGAAACT-TCCTGGAGGACGTCGGAAGAATGTGTTTGACACCGTTTACCAC 173 * * * * * * * * ** * * ** *** *** * *** ** consensus_5408#0 GTGTGGCG-CAACGGCATCACCGTGTTCGACATGCGCAAGTTCAAGAGCTGGCGCACGAC 1041 consensus_5408#1 GTGTGGCNGCAACGGCATCACCG-GTC--------------------------------- 613 consensus_5408#2 TGGAAGNGTTGATGGA-------------------------------------------- 189 * * * ** consensus_5408#0 GAACCATCTGTACAACCCGAACCCGCTGGCCAGCGACTACAACTACCAGGATCTGAACTT 1101 consensus_5408#1 ------------------------------------------------------------ consensus_5408#2 ------------------------------------------------------------ consensus_5408#0 CCAGTGGTCGGACGGTGTGTTCGGCATGTCGCTCGCGCCCGTCCACCGCTCCGGCGATCG 1161 consensus_5408#1 ------------------------------------------------------------ consensus_5408#2 ------------------------------------------------------------ consensus_5408#0 GATGCTGCTCTTCCACCCGA 1181 consensus_5408#1 -------------------- consensus_5408#2 -------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||