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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5418#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1215 fasta sequence
[CCGCCCACGCGTCCGCCCACGCGTCCGGACGGCAAGACGGCAACGGTGGAGCGGAAGGTGCCGGCGACGACCAAGGACGACGATCTGGATGTGGCCGTCCCGCAGCACGAGCTGCTGGACAATTCGCTCAACAAGGGCAAAAGCGATCTGGTTGCGCGGGGCGGCTTGGCCAAGCGCAATCTGCCCGGCAAGCGAAGCCACAGTAACAGCGGCTCGGACTGTGCGCTGGACGAAAGCGACGACGACGAGGGACAGCTGACGCGTAACGCGACCGGTACGGAGGGTTCGCACGAGTACAGTGGGCTGTACAGTACGCCCCAGATCGTGAACCGCAAGGTGGCCACGCTGAAGGGTGAAGACTCCGGGCTGCCCGTGTACGCACAGGTGAACAAAGAGCGTAGCTCCGGTGGAGGACATGCGGACCATCACCAGCAGCAGCAGCAGCAGCAGCAGCAGCATACGACGATTCCGAACATTTACCGTGCGGCGGTAGGGTCGGACAATGGCAAGCTGAACTCGAGCTACGGGTCGGATCTGAACGCGTCCTCGTACGACAGTGATCTCGGCTCGTCCACGGACAAGCTGAAGGATAGTGGGCTGTCCAGCGACAGCTGGATGTACCCGAGCCGAAGGCCAAAGGGGCTGAAGGGTATAACGCCGCCGCTGCTGGCGGAACAGCTGAAGGAACGGCTGGCGGAGCGGGAAGGCCGCCGTGGCTCGGGCGGTGGTTTGATCGACGACGGATCGTCGCGCGACTCGAGCGACGACTACTCGGAAATTAACCAACAGCAGCGACACATCAGCCCGGCCGCCTCACTGTCGCAGAACCTGCTGGTGGAAATCAAGAAGGCTGTCAACGAAGCGCAACCGAAAGTGAAAAACATACTTCCACAAAATTTATCTCCTCCAGGCGGTAACGGTCCATGGCAGCAGCAGCAGCAGCAGCAGCAGGGTGCGCAATCGACTAGCGGCGGTACGACGGCAGGCAGCTCCCAGGGACCCCCGTCACCGTCGAGCGTCTCGAGCGGATCGACGTCACCGGGCGCTTACTCCCCCAGCTTCTCGAGCGATCGGATCCGTGATACGCACCAGTGGAAAAATGGCCCCGTCGAGGAGTGGTCTAACGAACAGGTCTGCCAGTGGTTGCTCGGTATCGGGCTGGATCATCACATACCGGCCTTCATGCAGCATTCGGTCGAGGGCGGTGCGCTGCTG]
[+] EMBL BM593758 [CCGCCCACGCGTCCGCCCACGCGTCCGGACGGCAAGACGGCAACGGTGGAGCGGAAGGTGCCGGCGACGACCAAGGACGACGATCTGGATGTGGCCGTCCCGCAGCACGAGCTGCTGGACAATTCGCTCAACAAGGGCAAAAGCGATCTGGTTGCGCGGGGCGGCTTGGCCAAGCGCAATCTGCCCGGCAAGCGAAGCCACAGTAACAGCGGCTCGGACTGTGCGCTGGACGAAAGCGACGACGACGAGGGACAGCTGACGCGTAACGCGACCGGTACGGAGGGTTCGCACGAGTACAGTGGGCTGTACAGTACGCCCCAGATCGTGAACCGCAAGGTGGCCACGCTGAAGGGTGAAGACTCCGGGCTGCCCGTGTACGCACAGGTGAACAAAGAGCGTAGCTCCGGTGGAGGACATGCGGACCATCACCAGCAGCAGCAGCAGCAGCAGCAGCAGCATACGACGATTCCGAACATTTACCGTGCGGCGGTAGGGTCGGACAATGGCAAGCTGAACTCGAGCTACGGGTCGGATCTGAACGCGTCCTCGTACGACAGTGATCTCGGCTCGTCCACGGACAAGCTGAAGGATAGTGGGCTGTCCAGCGACAGCTGGATGTACCCGAGCCGAAGGCCAAAGGGGCTGAAGGGTATAACGCC ]
[+] EMBL BM609769 [ ccgTGAACGCGTCCTCGTACGACAGTGATCTCGGCTCGTCCACGGACAAGCTGAAGGATAGTGGGCTGTCGAGCGACAGCTGGATGTACCCGAGCCGAAGGCCAAAGGGGCTGAAGGGTATAACGCCGCCGCTGCTGGCGGAACAGCTGAAGGAACGGCTGGCGGAGCGGGAAGGCCGCCGTGGCTCGGGCGGTGGTTTGATCGACGACGGATCGTCGCGCGACTCGAGCGACGACTACTCGGAAATTAACCAACAGCAGCGACACATCAGCCCGGCCGCCTCACTGTCGCAGAACCTGCTGGTGGAAATCAAGAAGGCTGTCAACGAAGCGCAACCGAAAGTGAAAAACATACTTCCACAAAATTTATCTCCTCCAGGCGGTAACGGTCCATGGCAGCAGCAGCAGCAGCAGCAGCAGGGTGCGCAATCGACTAGCGGCGGTACGACGGCAGGCAGCTCCCAGGGACCCCCGTCACCGTCGAGCGTCTCGAGCGGATCGACGTCACCGGGCGCTTACTCCCCCAGCTTCTCGAGCGATCGGATCCGTGATACGCACCAGTGGAAAAATGGCCCCGTCGAGGAGTGGTCTAACGAACAGGTCTGCCAGTGGTTGCTCGGTATCGGGCTGGATCATCACATACCGGCCTTCATGCAGCATTCGGTCGAGGGCGGTGCGCTGCTG]
consensusID : consensus_5418#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 676 fasta sequence
[CCGCCCACGCGTCCGCCCACGCGTCCGGCCGAATCGCTGTTCGAAACGGAAGCTGCCAGGAGCAGCGACGTGGAGTCGTTGCGCCGCATCCTGCAGGAGCATAAAGCGCTCATTAAATACCAGCAGACCTGCAACGAGGCAGAGCTGTTGAATGAGCGCGTGAAGCAGACGGAGCGCGAGCTGGCCAACATCAAGAAGGAGGCAAACAACTACCAGAACATGCTGCAGCAGTCCCAGGCACAGTACCTGGTGCTGGAAAAGAAGTACAGCCGGGTGAAGAAGATACTGCGCGATTATCAGCACCGGGAGCGAGATATGATCCAGTTCCAGGAGTATTACCTGCAGCACCTGCAGGAGAAGGACACCGAGTACAATGCACTGGTGAAGAAGCTGAAGGATCGCGTCATCAGCCTCGAGCAGGAGCTGCAGGAAACGCAACGGAAGGCCGGCTTTCCGGTCATCCTGCCATACGACAGTGCCAGCCTGAAGCTGACGCCCCAGATGTCCCGCCGGCAGCCCCCGAAGCCCGTCTTCCAGAAGCTCGAGACGGATCTGTCCGACACGGAGTTTAGCGACCTCTCGCCGGACGGTGAGGGAGAGGACGGCAAGACGGCAACGGTGGGAGCGGAAGGTGCCGGCGACGACCAAGGACGACGATCTGGGATGTGGCCGTCCC]
[+] EMBL BM634148 [CCGCCCACGCGTCCGCCCACGCGTCCGGCCGAATCGCTGTTCGAAACGGAAGCTGCCAGGAGCAGCGACGTGGAGTCGTTGCGCCGCATCCTGCAGGAGCATAAAGCGCTCATTAAATACCAGCAGACCTGCAACGAGGCAGAGCTGTTGAATGAGCGCGTGAAGCAGACGGAGCGCGAGCTGGCCAACATCAAGAAGGAGGCAAACAACTACCAGAACATGCTGCAGCAGTCCCAGGCACAGTACCTGGTGCTGGAAAAGAAGTACAGCCGGGTGAAGAAGATACTGCGCGATTATCAGCACCGGGAGCGAGATATGATCCAGTTCCAGGAGTATTACCTGCAGCACCTGCAGGAGAAGGACACCGAGTACAATGCACTGGTGAAGAAGCTGAAGGATCGCGTCATCAGCCTCGAGCAGGAGCTGCAGGAAACGCAACGGAAGGCCGGCTTTCCGGTCATCCTGCCATACGACAGTGCCAGCCTGAAGCTGACGCCCCAGATGTCCCGCCGGCAGCCCCCGAAGCCCGTCTTCCAGAAGCTCGAGACGGATCTGTCCGACACGGAGTTTAGCGACCTCTCGCCGGACGGTGAGGGAGAGGACGGCAAGACGGCAACGGTGGGAGCGGAAGGTGCCGGCGACGACCAAGGACGACGATCTGGGATGTGGCCGTCCC]
consensusID : consensus_5418#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 538 fasta sequence
[TCGCCCCGAGGGTCAACACATCAGCCCGGCCGCCTCACTGTCGCAGAACCTGCTGGTGGAAATCAAGAAGGCTGTCAACGAAGCGCAACCGAAAGTGAAAAACATACTTCCACAAAATTTATCTCCTCCAGGCGGCAACGGTCCATGGCAGCAGCAGCAGCAGCAGCAGGGTGCGCAATCGACTAGCGGCGGTACGATGGCAGGCAGCTCCCAGGGGACCCCCGTCACCGTCGAGCGTCTCGAGCGGATCGACGTCACCGGGCGCTTACTCCCCCAGCCGTACGCTCGATCTGTCCGGGTCCACGTCTAGCTTCTCGAGCGATCGGATCCGTGATACGCACCAGTGGAAAAATGGCCCCGTCGAGGAGTGGTCTAACGAACAGGTCTGCCAGTGGTTGCTCGGTATCGGGCTGGATCATCACATACCGGCCTTCATGCAGCATTCGGTCGAGGGCGGTGCGCTGCTGCAGCTGGACAAGCCCGACTTCAAGATACTGAACGTGGGCGGCGATGATAAGAAGCTGCTCAAGCGCAACAT]
[+] EMBL AL933461 [TCGCCCCGAGGGTCAACACATCAGCCCGGCCGCCTCACTGTCGCAGAACCTGCTGGTGGAAATCAAGAAGGCTGTCAACGAAGCGCAACCGAAAGTGAAAAACATACTTCCACAAAATTTATCTCCTCCAGGCGGCAACGGTCCATGGCAGCAGCAGCAGCAGCAGCAGGGTGCGCAATCGACTAGCGGCGGTACGATGGCAGGCAGCTCCCAGGGGACCCCCGTCACCGTCGAGCGTCTCGAGCGGATCGACGTCACCGGGCGCTTACTCCCCCAGCCGTACGCTCGATCTGTCCGGGTCCACGTCTAGCTTCTCGAGCGATCGGATCCGTGATACGCACCAGTGGAAAAATGGCCCCGTCGAGGAGTGGTCTAACGAACAGGTCTGCCAGTGGTTGCTCGGTATCGGGCTGGATCATCACATACCGGCCTTCATGCAGCATTCGGTCGAGGGCGGTGCGCTGCTGCAGCTGGACAAGCCCGACTTCAAGATACTGAACGTGGGCGGCGATGATAAGAAGCTGCTCAAGCGCAACAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5418#0 CCGCCCACGCGTCCGCCCACGCGTCCGGACGGCAAGACGGCAACGGTGGAGCGGAAGGTG 60
consensus_5418#2 ------------------------------------------------------------
consensus_5418#1 ------------------------------------------------------------
consensus_5418#0 CCGGCGACGACCAAGGACGACGATCTGGATGTGGCCGTCCCGCAGCACGAGCTGCTGGAC 120
consensus_5418#2 ------------------------------------------------------------
consensus_5418#1 ------------------------------------------------------------
consensus_5418#0 AATTCGCTCAACAAGGGCAAAAGCGATCTGGTTGCGCGGGGCGGCTTGGCCAAGCGCAAT 180
consensus_5418#2 ------------------------------------------------------------
consensus_5418#1 ------------------------------------------------------------
consensus_5418#0 CTGCCCGGCAAGCGAAGCCACAGTAACAGCGGCTCGGACTGTGCGCTGGACGAAAGCGAC 240
consensus_5418#2 ------------------------------------------------------------
consensus_5418#1 ------------------------------------------------------------
consensus_5418#0 GACGACGAGGGACAGCTGACGCGTAACGCGACCGGTACGGAGGGTTCGCACGAGTACAGT 300
consensus_5418#2 ------------------------------------------------------------
consensus_5418#1 ------------------------------------------------------------
consensus_5418#0 GGGCTGTACAGTACGCCCCAGATCGTGAACCGCAAGGTGGCCACGCTGAAGGGTGAAGAC 360
consensus_5418#2 ------------------------------------------------------------
consensus_5418#1 ------------------------------------------------------------
consensus_5418#0 TCCGGGCTGCCCGTGTACGCACAGGTGAACAAAGAGCGTAGCTCCGGTGGAGGACATGCG 420
consensus_5418#2 ------------------------------------------------------------
consensus_5418#1 ------------------------------------------------------------
consensus_5418#0 GACCATCACCAGCAGCAGCAGCAGCAGCAGCAGCAGCATACGACGATTCCGAACATTTAC 480
consensus_5418#2 ------------------------------------------------------------
consensus_5418#1 ------------------------------------------------------------
consensus_5418#0 CGTGCGGCGGTAGGGTCGGACAATGGCAAGCTGAACTCGAGCTACGGGTCGGATCTGAAC 540
consensus_5418#2 ------------------------------------------------------------
consensus_5418#1 ------------------------------------------------------------
consensus_5418#0 GCGTCCTCGTACGACAGTGATCTCGGCTCGTCCACGGACAAGCTGAAGGATAGTGGGCTG 600
consensus_5418#2 ------------------------------------------------------------
consensus_5418#1 ---------------------------------------------------------CCG 3
consensus_5418#0 TCCAGCGACAGCTGGATGTACCCGAGCCGAAGGCCAAAGGGGCTGAAGGGTATAACGCCG 660
consensus_5418#2 ------------------------------------------------------------
consensus_5418#1 CCCACGCGTCCGCCCACGCGTCCGGCCGAATCGCTGTTCGAAACGGAAGCTGCCAGGA-G 62
consensus_5418#0 CCGCTGCTGGCGGAACAGCTGAAGGAACGGCTGGCGGAGCGGGAAGGCCGCCGTGGCTCG 720
consensus_5418#2 ------------------------------------------------------------
consensus_5418#1 CAGCGAC--GTGGAGTCGTTGCGCCGCATCCTGCAGGAGCATAAAGCGCTCATTAAATAC 120
consensus_5418#0 GGCGGTGGTTTGATCGACGACGGATCGTCGCGCGA-CTCGAGCGAC-GACTACTCGGAAA 778
consensus_5418#2 ------------------------------------------------------------
consensus_5418#1 CAGCAGACCTGCAACGAGGCAGAGCTGTTGAATGAGCGCGTGAAGCAGACGGAGCGCGAG 180
consensus_5418#0 TTAACCAACAGCAGCGACACATCAGCCCGGCCGCCTCAC-TGTCGCAGAACCTGCTGGTG 837
consensus_5418#2 -TCGCCCCGAGGGTCAACACATCAGCCCGGCCGCCTCAC-TGTCGCAGAACCTGCTGGTG 58
consensus_5418#1 CTGGCCAACATCAAGAAGGAGGCAAACAACTACCAGAACATGCTGCAGCAGTCCCAGGCA 240
* ** * * ** * * ** ** **** * * **
consensus_5418#0 GAAATCAAGAAGGCTGTCAACGAAGCGCAACCGAAAGTGAAAAACATACTTCCACAAAAT 897
consensus_5418#2 GAAATCAAGAAGGCTGTCAACGAAGCGCAACCGAAAGTGAAAAACATACTTCCACAAAAT 118
consensus_5418#1 CAGTACCTGGTG-CTGGAAAAGAAGTACAGCCGG--GTGAAGAAGATACTGC-GCGATTA 296
* * * * *** ** **** ** *** ***** ** ***** * * *
consensus_5418#0 TTATCTCCTCCAGGCGGTAACGGTCCA-TGGCAGCAGCAGCAGCAGCAGCAGCAGGGTGC 956
consensus_5418#2 TTATCTCCTCCAGGCGGCAACGGTCCA-TGGCAGCAGCAGCAGCAGCAGC---AGGGTGC 174
consensus_5418#1 TCAGCACCGGGAGCGAGATATGATCCAGTTCCAGGAGTATTACCTGCAGCACCTGCAGGA 356
* * * ** ** * * * **** * *** ** * * * ***** * *
consensus_5418#0 GCAATCGACTAGCGGCGGTACGACGGCAGGCAGCTCCCAGGG-ACCCCCGTCACCGTCGA 1015
consensus_5418#2 GCAATCGACTAGCGGCGGTACGATGGCAGGCAGCTCCCAGGGGACCCCCGTCACCGTCGA 234
consensus_5418#1 GAAGGACACCGAGTACAATGCACTGGTGAAGAAGCTGAAGGATCGCGTCATCAGCCTCGA 416
* * ** * * * ** * *** * * *** * ****
consensus_5418#0 GCGTCTCGAGCGGATCGACGTCACCGGGCGCTTACTCCCCCAGC---------------- 1059
consensus_5418#2 GCGTCTCGAGCGGATCGACGTCACCGGGCGCTTACTCCCCCAGCCGTACGCTCGATCTGT 294
consensus_5418#1 GCAGGAGCTGCAGGA-AACGCAACGGAAGGCCGGCTTTCCGGTCATCCTGCCATA----- 470
** ** * *** ** * ** ** ** *
consensus_5418#0 -----------------TTCTCGAGCGATCGGATCCGTGATACGCACCAGTGGAAAAATG 1102
consensus_5418#2 CCGGGTCCACGTCTAGCTTCTCGAGCGATCGGATCCGTGATACGCACCAGTGGAAAAATG 354
consensus_5418#1 ------CGACAGTGCCAGCCTGAAGCTGACGCCCCAGATGTCC-CGCCGGCAGCCCCCGA 523
** *** ** * * * * * ** * *
consensus_5418#0 GCCCCGTCGAGGAGTGGTCTAA--CGAACAGGTCTGCCA-GTGGTTGCTCGGTATCGGGC 1159
consensus_5418#2 GCCCCGTCGAGGAGTGGTCTAA--CGAACAGGTCTGCCA-GTGGTTGCTCGGTATCGGGC 411
consensus_5418#1 AGCCCGTCTTCCAGAAGCTCGAGACGGATCTGTCCGACACGGAGTTTAGCGACCTCTCGC 583
****** ** * * ** * *** * ** * *** ** ** **
consensus_5418#0 TGGATCATCACATACCGGCCTTCATGCAGCATTCGGTCGAGGGCGGTGCGCTGCTG---- 1215
consensus_5418#2 TGGATCATCACATACCGGCCTTCATGCAGCATTCGGTCGAGGGCGGTGCGCTGCTGCAGC 471
consensus_5418#1 CGGACGGTGAGGGAGAGGACGGCAAGACGGCAACGGT-GGGAGCGG-AAGGTGCCGGCGA 641
*** * * * ** * ** * * **** * * **** * *** *
consensus_5418#0 ------------------------------------------------------------
consensus_5418#2 TGGACAAGCCCGACTTCAAGATACTGAACGTGGGCGGCGATGATAAGAAGCTGCTCAAGC 531
consensus_5418#1 CGACCAAGGACGAC-----GATCTGGGATGTGGCCGTCCC-------------------- 676
consensus_5418#0 -------
consensus_5418#2 GCAACAT 538
consensus_5418#1 -------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||