|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5420#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 787 fasta sequence
[GATCGCCCGAGGNGTTAGCCAGTTTTTGCACGACTTCCACGAGGAGTGTGCGATGGAGGCGTTCCGCCTGAAGGACACCTCCGGCTCCGGGTTTATCTCGGCGCTCGACTTTCAGGACATTATGGTGAACGTGAAGAAGCACCTGCTGACGAGCGAGGTGCGGGATAATCTGATCGCGGTTACCGAGGGGCACCGGGTAAGCTTTCCCTACTTTATGGCATTTAACTCGCTGCTCAACAACATGGAGCTGATCAAGCGCATTTACCTGAACGCGACCAGCGGCAACCGGGCGGAACCGATTACCAAGGACGAGCTGCTGCACTCCGCCCAAACGATGAGCCAAATTACGCCGCTCGAGATCGACATCCTGTTCCAGCTGACCGGCGTCATCCATCAGAGCGGACGGATCGTGTACAATGATCTTAGCAACATTGCACCGGAACATTACATCAAAAACATCACCCACCGGCTAGCGGAAATCAAAGCCGTCGAATCGCCCGCCGACCGATCCTTCATGATACAGATGCTCGAGAGCACGTACCGGTTCACGCTCGGATCCGTCGCCGGCGCGGTCGGTGCTACGGCCGTCTATCCGATCGATCTGGTGAAGACGCGAATGCAAAACCAGCGTACCGGGTCCTTTATCGGCGAGGTGGCCTACCGGAACTCGTGGGACTGCTGCAAGAAGGTCATCCGGCACGAAGGCTTCCTGGGGCTGTACCGTGGTCTGGTGCCGCAGCTGATGGGCGTCGCGCCCGAGAAAGCGATCAAGCTGACGGTGAACGAT]
[+] EMBL AL933486 [GATCGCCCGAGGNGTTAGCCAGTTTTTGCACGACTTCCACGAGGAGTGTGCGATGGAGGCGTTCCGCCTGAAGGACACCTCCGGCTCCGGGTTTATCTCGGCGCTCGACTTTCAGGACATTATGGTGAACGTGAAGAAGCACCTGCTGACGAGCGAGGTGCGGGATAATCTGATCGCGGTTACCGAGGGGCACCGGGTAAGCTTTCCCTACTTTATGGCATTTAACTCGCTGCTCAACAACATGGAGCTGATCAAGCGCATTTACCTGAACGCGACCAGCGGCAACCGGGCGGAACCGATTACCAAGGACGAGCTGCTGCACTCCGCCCAAACGATGAGCCAAATTACGCCGCTCGAGATCGACATCCTGTTCCAGCTGACCGGCGTCATCCATCAGAGCGGACGGATCGTGTACAATGATCTTAGCAACATTGCACCGGAACATTACATCAAAAACATCACCCACCGGCTAGCGGAAATCAAAGCCGTCGAATCGCCCGCCGACCGATCC ]
[+] EMBL BM579726 [ ccgAGCACCTGCTGACGAGCGAGGTGCGGGATAATCTGATCGCGGTTACCGAGGGGCACCGGGTAAGCTTTCCCTACTTTATGGCATTTAACTCGCTGCTCAACAACATGGAGCTGATCAAACGCATTTACCTGAACGCGACCAGCGGCAACCGGGCGGAACCAATTACCAAGGACGAGCTGCTGCACTCCGCCCAAACGATGAGCCAAATTACGCCGCTCGAGATCGACATCCTGTTCCAGCTGACCGGCGTCATCCATCAGAGCGGACGGATCGTGTACAATGATCTTAGCAACATTGCGCCGGAACATTACATCAAAAACATCACCCACCGGCTAGCGGAAATCAAAGCCGTCGAATCGCCCGCCGACCGATCCTTCATGATACAGATGCTCGAGAGCACGTACCGGTTCACGCTCGGATCCGTCGCCGGCGCGGTCGGTGCTACGGCCGTCTATCCGATCGATCTGGTGAAGACGCGAATGCAAAACCAGCGTACCGGGTCCTTTATCGGCGAGGTGGCCTACCGGAACTCGTGGGACTGCTGCAAGAAGGTCATCCGGCACGAAGGCTTCCTGGGGCTGTACCGTGGTCTGGTGCCGCAGCTGATGGGCGTCGCGCCCGAGAAAGCGATCAAGCTGACGGTGAACGAT]
consensusID : consensus_5420#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 582 fasta sequence
[CCGGCTAGCTGTGTCCGGTACCGGGCAAAGACAGGACAGGAGGGCACACGGTACGCAGCGGCTCAACAGAAACATCTACTGCAATCCCCCAACATATCCGAACACACGACGACTGGCAGCGACGACACGGCAATCACCATGAAGCTGGAATCGCGACCAATCACGGAGAACCCGATGCATATAAAGCGTGCCTCCACCGAGAAGCTGCGTGAAATCTTCAGCAAATATGCGACCCAACAAATCAATGGCGAACCGTACATGACCAGCGCAGACTTTGTCCGAAGCTTTCTCGGACAATCGTACAATGAGGAATCCATCAAACTGATCGCCGGCATTGCCGACACGAGCAAGGACGGGCTGATCTCGTTCGCCGAGTTTCAGGCGTTCGAGGGGCTGCTCTGCACCCCGGACGCCCTGTACAAAACCGCGTTCCAGCTGTTCGACCGTAACGGCAACGGCTCGGTCACGTACAGTGAGTTTGTCGATGTATTCAAAAAGACAGATCTGCACGCTAAAATCCCGTTCAAACTGGACGGCCCTTTCATACAGCTTTACTTCGGCAAGGACCGCCAGCGGGTGATC]
[+] EMBL BM605354 [CCGGCTAGCTGTGTCCGGTACCGGGCAAAGACAGGACAGGAGGGCACACGGTACGCAGCGGCTCAACAGAAACATCTACTGCAATCCCCCAACATATCCGAACACACGACGACTGGCAGCGACGACACGGCAATCACCATGAAGCTGGAATCGCGACCAATCACGGAGAACCCGATGCATATAAAGCGTGCCTCCACCGAGAAGCTGCGTGAAATCTTCAGCAAATATGCGACCCAACAAATCAATGGCGAACCGTACATGACCAGCGCAGACTTTGTCCGAAGCTTTCTCGGACAATCGTACAATGAGGAATCCATCAAACTGATCGCCGGCATTGCCGACACGAGCAAGGACGGGCTGATCTCGTTCGCCGAGTTTCAGGCGTTCGAGGGGCTGCTCTGCACCCCGGACGCCCTGTACAAAACCGCGTTCCAGCTGTTCGACCGTAACGGCAACGGCTCGGTCACGTACAGTGAGTTTGTCGATGTATTCAAAAAGACAGATCTGCACGCTAAAATCCCGTTCAAACTGGACGGCCCTTTCATACAGCTTTACTTCGGCAAGGACCGCCAGCGGGTGATC]
consensusID : consensus_5420#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 397 fasta sequence
[AATCGCCCCGAGGTTAAAAAGACAGATCTGCCGCTAAAATCCCGTTCAAACTGGACGGCCCTTTCATACAGCTTTACTTCGGCAAGGACCGCCAGCGGGTGATCAATTACGTCGAGTTTAGCCAGTTTTTGCACGACTTCCACGAGGAGTGTGCGATGGAGGCGTTCCGCCTGAAGGACACCTCCGGCTCCCGGGTTTATCTCGGCGCCTCGACTTTCAGGACATTATGGTGAACGTGAAGAAGCACCCTGCTGACGAGCGAAGTGCGGGATAATCTGATCGCGGTTACCGAGGGGCACCCGGGGTAAGGCTTTCCCTACTTTATGGCATTTAACTCGCTGCTCAACAACATGGAGCTGATCAAGCGCATTTACCTGAACGCGACAGCGGCAACCGG]
[+] EMBL AL933777 [AATCGCCCCGAGGTTAAAAAGACAGATCTGCCGCTAAAATCCCGTTCAAACTGGACGGCCCTTTCATACAGCTTTACTTCGGCAAGGACCGCCAGCGGGTGATCAATTACGTCGAGTTTAGCCAGTTTTTGCACGACTTCCACGAGGAGTGTGCGATGGAGGCGTTCCGCCTGAAGGACACCTCCGGCTCCCGGGTTTATCTCGGCGCCTCGACTTTCAGGACATTATGGTGAACGTGAAGAAGCACCCTGCTGACGAGCGAAGTGCGGGATAATCTGATCGCGGTTACCGAGGGGCACCCGGGGTAAGGCTTTCCCTACTTTATGGCATTTAACTCGCTGCTCAACAACATGGAGCTGATCAAGCGCATTTACCTGAACGCGACAGCGGCAACCGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5420#0 ------------------------------------------------------------
consensus_5420#2 ------------------------------------------------AATCGCCCCGAG 12
consensus_5420#1 CCGGCTAGCTGTGTCCGGTACCGGGCAAAGACAGGACAGGAGGGCACACGGTACGCAGCG 60
consensus_5420#0 ------------------------------------------------------------
consensus_5420#2 GTTAAAAAGACAGATCTGCCGCTAAAATCCCGTTCAAACTGGACGGCCCTTTCATACAGC 72
consensus_5420#1 GCTCAACAGAAACATCTACTGCAATCCCCCAACATATCCGAACACACGACGACTGGCAGC 120
consensus_5420#0 ----------------------------------GATCGCCCGAGGNG---TTAGC-CAG 22
consensus_5420#2 TTTACTTCGGCAAGGACCGCCA-GCGGG-----TGATCAATTACGTCGAGTTTAGC-CAG 125
consensus_5420#1 GACGACACGGCAATCACCATGAAGCTGGAATCGCGACCAATCACGGAGAACCCGATGCAT 180
** * * * **
consensus_5420#0 TTTTTGCACGACTTCCACGAGGAGTGTGCGATGGAGGCGTTCCGCCTGAAGGACACCTC- 81
consensus_5420#2 TTTTTGCACGACTTCCACGAGGAGTGTGCGATGGAGGCGTTCCGCCTGAAGGACACCTC- 184
consensus_5420#1 ATAAAGCGTGCCTCCACCGAGAAGC-TGCG--TGAAATCTTCAGCAAATATGCGACCCAA 237
* ** * ** * **** ** **** ** *** ** * * ***
consensus_5420#0 CGGCTCC-GGGTTTATCTCGGCGC-TCGACTTTCAGGACATTATGGTGAACGTGAAGAAG 139
consensus_5420#2 CGGCTCCCGGGTTTATCTCGGCGCCTCGACTTTCAGGACATTATGGTGAACGTGAAGAAG 244
consensus_5420#1 CAAATCAATGGCGAACC---GTACATGACCAGCGCAGACTTTGTCCGAAGCTTTCTCGGA 294
* ** ** * * * * * * *** ** * * * *
consensus_5420#0 CACC-TGCTGACGAGCGAGGTGCGGGATAATCTGATCGCGG---TTACCGAGGGGCACC- 194
consensus_5420#2 CACCCTGCTGACGAGCGAAGTGCGGGATAATCTGATCGCGG---TTACCGAGGGGCACCC 301
consensus_5420#1 CA----ATCGTACAATGAGGAATCCATCAAACTGATCGCCGGCATTGCCGACACGAGCAA 350
** * * ** * ** ******** * ** **** * *
consensus_5420#0 ----GGGTAAG-CT---TTCCCTACTTTATGGCATTTAACTCGCTGCTCAACAACATGGA 246
consensus_5420#2 G---GGGTAAGGCT---TTCCCTACTTTATGGCATTTAACTCGCTGCTCAACAACATGGA 355
consensus_5420#1 GGACGGGCTGATCTCGTTCGCCGAGTTTCAGGCGTTCGAGGGGCTGCTCTGCACCCCGGA 410
*** ** * ** * *** *** ** * ******* ** * ***
consensus_5420#0 G---CTGATCAAG--CGCATTT-ACCTGAACGCGACCAGCGGCAACCGGGCGGAACCGAT 300
consensus_5420#2 G---CTGATCAAG--CGCATTT-ACCTGAACGCGAC-AGCGGCAACCGG----------- 397
consensus_5420#1 CGCCCTGTACAAAACCGCGTTCCAGCTGTTCGACCGTAACGGCAACGGCTCGGTCACGTA 470
*** *** *** ** * *** ** * ******* *
consensus_5420#0 TACCAAGGACGAGCTGCTGCACTCCGCCCAAACGATGAGCCAAATTACGCCGCTCGAGAT 360
consensus_5420#2 ------------------------------------------------------------
consensus_5420#1 CAGTGAGTTTGTCGATGTATTCAAAAAGACAGATCTGCACGCTAAAATCCCGTTCAAACT 530
consensus_5420#0 CGACATCCTGTTCCAGCTGACCGGCGTCATCCATCAGAGCGGACGGATCGTGTACAATGA 420
consensus_5420#2 ------------------------------------------------------------
consensus_5420#1 GGACGGCCCTTTCATACAGCTTTACTTCGGCAAGGACCGCCAGCGGGTGATC-------- 582
consensus_5420#0 TCTTAGCAACATTGCACCGGAACATTACATCAAAAACATCACCCACCGGCTAGCGGAAAT 480
consensus_5420#2 ------------------------------------------------------------
consensus_5420#1 ------------------------------------------------------------
consensus_5420#0 CAAAGCCGTCGAATCGCCCGCCGACCGATCCTTCATGATACAGATGCTCGAGAGCACGTA 540
consensus_5420#2 ------------------------------------------------------------
consensus_5420#1 ------------------------------------------------------------
consensus_5420#0 CCGGTTCACGCTCGGATCCGTCGCCGGCGCGGTCGGTGCTACGGCCGTCTATCCGATCGA 600
consensus_5420#2 ------------------------------------------------------------
consensus_5420#1 ------------------------------------------------------------
consensus_5420#0 TCTGGTGAAGACGCGAATGCAAAACCAGCGTACCGGGTCCTTTATCGGCGAGGTGGCCTA 660
consensus_5420#2 ------------------------------------------------------------
consensus_5420#1 ------------------------------------------------------------
consensus_5420#0 CCGGAACTCGTGGGACTGCTGCAAGAAGGTCATCCGGCACGAAGGCTTCCTGGGGCTGTA 720
consensus_5420#2 ------------------------------------------------------------
consensus_5420#1 ------------------------------------------------------------
consensus_5420#0 CCGTGGTCTGGTGCCGCAGCTGATGGGCGTCGCGCCCGAGAAAGCGATCAAGCTGACGGT 780
consensus_5420#2 ------------------------------------------------------------
consensus_5420#1 ------------------------------------------------------------
consensus_5420#0 GAACGAT 787
consensus_5420#2 -------
consensus_5420#1 -------
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||