cluster # 5426

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Anopheles gambiae
cluster # 5426 cluster # 5426 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5426#0 length = 678 sequences # 3

consensus_5426#1 length = 587 sequences # 1

consensusID : consensus_5426#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 678
fasta sequence

                              [CCCCGAGGTAGTTACGTGGAAAACTACAATTAGAAAGCCGTCGCGTTCAATTTAAGTTCCAAGCTTTTCTACCTTTATTATTGTGCCACAACGCGATAGAATTGCTGTGTGCGTGGCGCCAGAATCAGTCCTTCTTTATCGTCCTTCGTGGAATAGCAAAGTGCTCTCCGGCACAGCTGCGCTGGAATAGCTGACTCATAGCCGGCGATGGATAGCGATGCGAGTGAAAATAATTCGGTCCCGCTGGACAAAACTAACGATGAGCTGCAGCGGAGCCGATCCCCTCTAGAGACAGTAGCGGAGGAAGCAGAAGGATATCAGCCCATTCTGGTCACACCGGCGACGGAATGGAAGTCGCTACCGCTTCTGGTGGAGGACAGCAGCCGGGTGCTGCTGGCACCGTCGCTCCAGCTTGCCTTGCGCCATTTTTTCACCCACTGCGGCAGGGACGTCATCGAGATAAGCCGGTCCGATCTGATGATAGTGCTTATCTATGTGATCGCCCTCGAGACGGGCCTGATACCGAAGGGTGGCTCACTGCCGCCGAGCTGCCGGCCGGGGAAGCATCACACCACCTACCGCTCGTTCGATAGGCGGTTGGTGAACCATTTCGCGTCGCGCCTCCCGCTCGACTGGTTCGGTACCCGTGCCGGGCCGTACNGGTTCGAGCTGGAGCTG]

[+] EMBL AL933573             [CCCCGAGGTAGTTACGTGGAAAACTACAATTAGAAAGCCGTCGCGTTCAATTTAAGTTCCAAGCTTTTCTACCTTTATTATTGTGCCACAACGCGATAGAATTGCTGTGTGCGTGGCGCCAGAATCAGTCCTTCTTTATCGTCCTTCGTGGAATAGCAAAGTGCTCTCCGGCACAGCTGCGCTGGAATAGCTGACTCATAGCCGGCGATGGATAGCGATGCGAGTGAAAATAATTCGGTCCCGCTGGACAAAACTAACGATGAGCTGCAGCGGAGCCGATCCCCTCTAGAGACAGTAGCGGAGGAAGCAGAAGGATATCAGCCCATTCTGGTCACACCGGCGACGGAATGGAAGTCGCTACCGCTTCTGGTGGAGGACAGCAGCCGGGTGCTGCTGGCACCGTCGCTCCAGCTTGCCTTGCGCCATTTTTTCACCCACTGCGGCAGGGACGTCATCGAGATAAGCCGGTCCGA                                                                                                                                                                                                             ]
[+] EMBL BX628284             [                                                AATTTAAGTTCCAAGCTTTTCTACCTTTATTATTGTGCCACAACGCGATAGAATTGCTGTGTGCGTGGCGCCAGAATCAGTCCTTCTTTATCGTCCTTCGTGGAATAGCAAAGTGCTCTCCGGCACAGCTGCGCTGGAATAGCTGACTCATAGCCGGCGATGGATAGCGATGCGAGTGAAAATAATTCGGTCCCGCTGGACAAAACTAACGATGAGCTGCAGCGGAGCCGATCCCCTCTAGAGACAGTAGCGGAGGAAGCAGAAGGATATCAGCCCATTCTGGTCACACCGGCGACGGAATGGAAGTCGCTACCGCTTCTGGTGGAGGACAGCAGCCGGGTGCTGCTGGCACCGTCGCTCCAGCTTGCCTTGCGCCATTTTTTCACCCACTGCGGCAGGGACGTCATCGAGATAAGCCGGTCCGATCTGATGATAGTGCTTATCTATGTGATCGCCCTCGAGACGGGCCTGATACCGAAGGGTGGCTCACTGCCGCCGAGCTGCCGGCCGGGGAAGCATCACACCACCTACCGCTCGTTCGATAGGCGGTTGGTGAACCATTTCGCGTCGCGCCTCCCGCTCGACTGGTTCGGTACCCGTGCCGGGCCGTACNGGTTCGAGCTGGAGCTG]
[+] EMBL BX615133             [                                                                                                                                     CTTTATCGTCCTTCGTGGAATAGCAAAGTGCTCTCCGGCACAGCTGCGCTGGAATAGCTGACTCATAGCCGGCGATGGATAGCGATGCGAGTGAAAATAATTCGGTCCCGCTGGACAAAACTAACGATGAGCTGCAGCGGAGCCGATCCCCTCTAGAGACAGTAGCGGAGGAAGCAGAAGGATATCAGCCCATTCTGGTCACACCGGCGACGGAATGGAAGTCGCTACCGCTTCTGGTGGAGGACAGCAGCCGGGTGCTGCTGGCACCGTCGCTCCAGCTTGCCTTGCGCCATTTTTTCACCCACTGCGGCAGGGACGTCATCGAGATAAGCCGGTCCGATCTGATGATAGTGCTTATCTATGTGATCGCCCTCGAGACGGGCCTGATACCGAAGGGTGGCTCACTGCCGCCGAGCTGCCGGCCGGGGAAGCATCACACCACCTACCGCTCGTTCGATAGGCGGTTGGTGAACCATTTCGCGTCGCGCCTCCCGCTCGACTGGTTCGGT                                    ]




>consensus_5426#0
CCCCGAGGTAGTTACGTGGAAAACTACAATTAGAAAGCCGTCGCGTTCAATTTAAGTTCC
AAGCTTTTCTACCTTTATTATTGTGCCACAACGCGATAGAATTGCTGTGTGCGTGGCGCC
AGAATCAGTCCTTCTTTATCGTCCTTCGTGGAATAGCAAAGTGCTCTCCGGCACAGCTGC
GCTGGAATAGCTGACTCATAGCCGGCGATGGATAGCGATGCGAGTGAAAATAATTCGGTC
CCGCTGGACAAAACTAACGATGAGCTGCAGCGGAGCCGATCCCCTCTAGAGACAGTAGCG
GAGGAAGCAGAAGGATATCAGCCCATTCTGGTCACACCGGCGACGGAATGGAAGTCGCTA
CCGCTTCTGGTGGAGGACAGCAGCCGGGTGCTGCTGGCACCGTCGCTCCAGCTTGCCTTG
CGCCATTTTTTCACCCACTGCGGCAGGGACGTCATCGAGATAAGCCGGTCCGATCTGATG
ATAGTGCTTATCTATGTGATCGCCCTCGAGACGGGCCTGATACCGAAGGGTGGCTCACTG
CCGCCGAGCTGCCGGCCGGGGAAGCATCACACCACCTACCGCTCGTTCGATAGGCGGTTG
GTGAACCATTTCGCGTCGCGCCTCCCGCTCGACTGGTTCGGTACCCGTGCCGGGCCGTAC
NGGTTCGAGCTGGAGCTG

consensusID : consensus_5426#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 587
fasta sequence

                              [AGCTGCCTACCGCAAAAGCCGAAGCTGGCTGTGTGTTTTCAGTGTTTACGTTGGAAAACTACAAATTAGAAAGCCATCGCGTTCAATTTAAGTTCCAAGCTTTTCCACCTTTATTATCGTTTGCCACAACGCGTTAGAATAGCTGTGTGCGTGGCGCCAGAATCAATCCTTCGTTATCGTCCTTCGTCCGGAATAGCAAAGTGCTCTCCGGCACAGCTGCGCTGGAATAGCTGACTCATAGCCGGCGATGGATAGCGATGCGAGTGAGAATAATTCGGTCCCGCTGGACAAAACTAACGATGAGCTGCAGCGGACCGATCCCCTCTGGAGACAGTAGCGGAGGAAGCAGAAGGATATCAGCCCATTCTGGTCACACCGGCGACGGAATGGAAGTCGCTACCGCTTCTGGTGGAGGACAGCAGCCGGGTGCTGCTGGCACCGTCGCTCCAGCTTGCCTTGCGCCATTTTTTCACCCACTGCGGCAGGGACGTCATCGAGATAAGCCGGTCCGATCTGATGATAGTGCTTATCTATGTGATCGCCCTCGAGACCGGGCCTGATACCGAAGGGTGGCTCACTGCCGCCGA]

[+] EMBL CNS08UVT             [AGCTGCCTACCGCAAAAGCCGAAGCTGGCTGTGTGTTTTCAGTGTTTACGTTGGAAAACTACAAATTAGAAAGCCATCGCGTTCAATTTAAGTTCCAAGCTTTTCCACCTTTATTATCGTTTGCCACAACGCGTTAGAATAGCTGTGTGCGTGGCGCCAGAATCAATCCTTCGTTATCGTCCTTCGTCCGGAATAGCAAAGTGCTCTCCGGCACAGCTGCGCTGGAATAGCTGACTCATAGCCGGCGATGGATAGCGATGCGAGTGAGAATAATTCGGTCCCGCTGGACAAAACTAACGATGAGCTGCAGCGGACCGATCCCCTCTGGAGACAGTAGCGGAGGAAGCAGAAGGATATCAGCCCATTCTGGTCACACCGGCGACGGAATGGAAGTCGCTACCGCTTCTGGTGGAGGACAGCAGCCGGGTGCTGCTGGCACCGTCGCTCCAGCTTGCCTTGCGCCATTTTTTCACCCACTGCGGCAGGGACGTCATCGAGATAAGCCGGTCCGATCTGATGATAGTGCTTATCTATGTGATCGCCCTCGAGACCGGGCCTGATACCGAAGGGTGGCTCACTGCCGCCGA]




>consensus_5426#1
AGCTGCCTACCGCAAAAGCCGAAGCTGGCTGTGTGTTTTCAGTGTTTACGTTGGAAAACT
ACAAATTAGAAAGCCATCGCGTTCAATTTAAGTTCCAAGCTTTTCCACCTTTATTATCGT
TTGCCACAACGCGTTAGAATAGCTGTGTGCGTGGCGCCAGAATCAATCCTTCGTTATCGT
CCTTCGTCCGGAATAGCAAAGTGCTCTCCGGCACAGCTGCGCTGGAATAGCTGACTCATA
GCCGGCGATGGATAGCGATGCGAGTGAGAATAATTCGGTCCCGCTGGACAAAACTAACGA
TGAGCTGCAGCGGACCGATCCCCTCTGGAGACAGTAGCGGAGGAAGCAGAAGGATATCAG
CCCATTCTGGTCACACCGGCGACGGAATGGAAGTCGCTACCGCTTCTGGTGGAGGACAGC
AGCCGGGTGCTGCTGGCACCGTCGCTCCAGCTTGCCTTGCGCCATTTTTTCACCCACTGC
GGCAGGGACGTCATCGAGATAAGCCGGTCCGATCTGATGATAGTGCTTATCTATGTGATC
GCCCTCGAGACCGGGCCTGATACCGAAGGGTGGCTCACTGCCGCCGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5426#0      ----------------------------------CCCCGAGGTAGTTACGT-GGAAAACT 25
consensus_5426#1      AGCTGCCTACCGCAAAAGCCGAAGCTGGCTGTGTGTTTTCAGTGTTTACGTTGGAAAACT 60
                                                               **  ****** ********

consensus_5426#0      ACAA-TTAGAAAGCCGTCGCGTTCAATTTAAGTTCCAAGCTTTTCTACCTTTATTATTGT 84
consensus_5426#1      ACAAATTAGAAAGCCATCGCGTTCAATTTAAGTTCCAAGCTTTTCCACCTTTATTATCGT 120
                      **** ********** ***************************** *********** **

consensus_5426#0      --GCCACAACGCGATAGAATTGCTGTGTGCGTGGCGCCAGAATCAGTCCTTCTTTATCGT 142
consensus_5426#1      TTGCCACAACGCGTTAGAATAGCTGTGTGCGTGGCGCCAGAATCAATCCTTCGTTATCGT 180
                        *********** ****** ************************ ****** *******

consensus_5426#0      CCTTCGT--GGAATAGCAAAGTGCTCTCCGGCACAGCTGCGCTGGAATAGCTGACTCATA 200
consensus_5426#1      CCTTCGTCCGGAATAGCAAAGTGCTCTCCGGCACAGCTGCGCTGGAATAGCTGACTCATA 240
                      *******  ***************************************************

consensus_5426#0      GCCGGCGATGGATAGCGATGCGAGTGAAAATAATTCGGTCCCGCTGGACAAAACTAACGA 260
consensus_5426#1      GCCGGCGATGGATAGCGATGCGAGTGAGAATAATTCGGTCCCGCTGGACAAAACTAACGA 300
                      *************************** ********************************

consensus_5426#0      TGAGCTGCAGCGGAGCCGATCCCCTCTAGAGACAGTAGCGGAGGAAGCAGAAGGATATCA 320
consensus_5426#1      TGAGCTGCAGCGGA-CCGATCCCCTCTGGAGACAGTAGCGGAGGAAGCAGAAGGATATCA 359
                      ************** ************ ********************************

consensus_5426#0      GCCCATTCTGGTCACACCGGCGACGGAATGGAAGTCGCTACCGCTTCTGGTGGAGGACAG 380
consensus_5426#1      GCCCATTCTGGTCACACCGGCGACGGAATGGAAGTCGCTACCGCTTCTGGTGGAGGACAG 419
                      ************************************************************

consensus_5426#0      CAGCCGGGTGCTGCTGGCACCGTCGCTCCAGCTTGCCTTGCGCCATTTTTTCACCCACTG 440
consensus_5426#1      CAGCCGGGTGCTGCTGGCACCGTCGCTCCAGCTTGCCTTGCGCCATTTTTTCACCCACTG 479
                      ************************************************************

consensus_5426#0      CGGCAGGGACGTCATCGAGATAAGCCGGTCCGATCTGATGATAGTGCTTATCTATGTGAT 500
consensus_5426#1      CGGCAGGGACGTCATCGAGATAAGCCGGTCCGATCTGATGATAGTGCTTATCTATGTGAT 539
                      ************************************************************

consensus_5426#0      CGCCCTCGAGAC-GGGCCTGATACCGAAGGGTGGCTCACTGCCGCCGAGCTGCCGGCCGG 559
consensus_5426#1      CGCCCTCGAGACCGGGCCTGATACCGAAGGGTGGCTCACTGCCGCCGA------------ 587
                      ************ ***********************************            

consensus_5426#0      GGAAGCATCACACCACCTACCGCTCGTTCGATAGGCGGTTGGTGAACCATTTCGCGTCGC 619
consensus_5426#1      ------------------------------------------------------------
                                                                                  

consensus_5426#0      GCCTCCCGCTCGACTGGTTCGGTACCCGTGCCGGGCCGTACNGGTTCGAGCTGGAGCTG 678
consensus_5426#1      -----------------------------------------------------------