These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5432#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1267 fasta sequence [AGAATGGTGATCGTAGGCAAGAACTAGAGTGCTGATGGAGTCGTATTGTGAAAGTATAGTAAGTGATCGCAGCTAAACATGACACCACATTTTACAAACACTGTGCGTCAATGAAAAAAGGGAACCCGGTTTGAGAGAAAAGAGAAAAAAAAAGCGAAACAACCAAACTCCAGAAAGCGAACTTGAAACTCCCAAGATAAAAATGATATAGAAACACACGGATTCGTTCGCAGGAATTGTGAGAAGAAAACATTGTCGCACCTGTAGTAAGTTGAAAAAGAGAAGAAAAACAAAAGCCCCGTGTAGGAAAGGAATACAACCAGCGGAATAGAAAGAACTGATCATTATTTAGATTTTGTGAATAACCCCCTACAATGTACTCGTAGCAAACAGCTGCTAAGGTGTGTGCAAAGCGAATTACCAGAAATGAAACCAGATTAGGGTCATAGGTCAAATGTCAAAATGAAATGAACATGAACAACTTCTAGGGTAGTATCACTTTAACGCTAAACTAAAAGGGATCTTTCCTCTCTGGACGGAAGAGATCTGCTTGCCATCATACGAGAAAAAAAAACACATGACGGCTAATATGTAAGCGTTTAGTATTTTAGTAGAGTAACGTATAAGTTATGTCTCTTTATGGTTTTTTGTTTGTTTTATTTTTGNTTTTAAATGCAGGGTGCATTGGAGCTAGAACCCACGAGAAATGATCTTAGTGTAGTAGCAGCGGAAGTAGTAGTAAGAGGATGAACAAGAAGCAAAGTGCAGCAAACACGGTTTTGTAATGTCGTACGGCTATCGTACCGAAAGATTGAATTTCAAACCAATCGTCCATTTGTTTGGACGGTTCACAGATTTAGTTTATTTGTTTGTTTGTTTGTTTTATTTTTTTTATTTAAAAACAAAACTAATTTCTATTGTTTGTTTGCATATAGATTTTGTTTATTTAGTTGTCTTGTATTATTTATAAACAGTCCCAACAATTACCAACACATCTCCTCTTCCCTTTATACTTAAACCATGAGTAGATGTACATGAACAGACGTAATAATAAAATTGAAAAAAAAAAAACACAACAAACCATGTCACAACGTAAATGACATACATTTTCTGTAGCAACTTGCAAACAGAGCTGTAAACAGAGACGATAACAACTGAGGGAATTTGATAAAAAAAAACCGATCTGTGTAAAATTGATCGATAAATTATTAAAATATTTAAAACCCGAAAAAAAAAAAAAAAAAAAAAAAAACGGACGCGTGGGCGG] [+] EMBL BX621598 [AGAATGGTGATCGTAGGCAAGAACTAGAGTGCTGATGGAGTCGTATTGTGAAAGTATAGTAAGTGATCGCAGCTAAACATGACACCACATTTTACAAACACTGTGCGTCAATGAAAAAAGGGAACCCGGTTTGAGAGAAAAGAGAAAAAAAAAGCGAAACAACCAAACTCCAGAAAGCGAACTTGAAACTCCCAAGATAAAAATGATATAGAAACACACGGATTCGTTCGCAGGAATTGTGAGAAGAAAACATTGTCGCACCTGTAGTAAGTTGAAAAAGAGAAGAAAAACAAAAGCCCCGTGTAGGAAAGGAATACAACCAGCGGAATAGAAAGAACTGATCATTATTTAGATTTTGTGAATAACCCCCTACAATGTACTCGTAGCAAACAGCTGCTAAGGTGTGTGCAAAGCGAATTACCAGAAATGAAACCAGATTAGGGTCATAGGTCAAATGTCAAAATGAAATGAACATGAACAACTTCTAGGGTAGTATCACTTTAACGCTAAACTAAAAGGGATCTTTCCTCTCTGGACGGAAGAGATCTGCTTGCCATCATACGAGAAAAAAAAACACATGACGGCTAATATGTAAGCGTTTAGTATTTTAGTAGAGTAACGTATAAGTTATGTCTCTTTATGGTTTTTTGTTTGTTTTATTTTTGNTTTTAAATGCAGGGTGCATTGGAGCTAGAACCCACGAGAAATGATCTTAGTGTAGTAGCAGCGGAAGTAGTAGTAAGAGGAT ] [-] EMBL BX624673 [ AATGCAGGGTGCATTGGAGCTAGAACCCACGAGAAATGATCTTAGTGTAGTAGCAGCGGAAGTAGTAGTAAGAGGATGAACAAGAAGCAAAGTGCAGCAAACACGGTTTTGTAATGTCGTACGGCTATCGTACCGAAAGATTGAATTTCAAACCAATCGTCCATTTGTTTGGACGGTTCACAGATTTAGTTTATTTGTTTGTTTGTTTGTTTTATTTTTTTTATTTAAAAACAAAACTAATTTCTATTGTTTGTTTGCATATAGATTTTGTTTATTTAGTTGTCTTGTATTATTTATAAACAGTCCCAACAATTACCAACACATCTCCTCTTCCCTTTATACTTAAACCATGAGTAGATGTACATGAACAGACGTAATAATAAAATTGAAAAAAAAAAAACACAACAAACCATGTCACAACGTAAATGACATACATTTTCTGTAGCAACTTGCAAACAGAGCTGTAAACAGAGACGATAACAACTGAGGGAATT ] [-] EMBL BM651743 [ TTTCTATTGTTTGTTTGCATATAGATTTTGTTTATTTAGTTGTCTTGTATTATTTATAAACAGTCCCAACAATTACCAACACATCCCCTTTTCCCTTTATTCTTAAACCATGAGTAGATGTACATGAACAGACGTAATAATAAAATTGAAGAAAAAAAAACCCAACAAACCATGTCACAACGTAAATGACATACATTTTCTGTAGCAACTTGCAAACAGAGCTGTAAACAGAGACGATAACAACTGAGGGAATTTGATAAAAAAAAACCGATCTGTGTAAAATTGATCGATAAATTATTAAAATATTTAAAACCCGAAAAAAAAAAAAAAAAAAAAAAAAACGGACGCGTGGGCGG] consensusID : consensus_5432#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 536 fasta sequence [GTATAGTAAGTGATCGCAGCTAAACATGACACCATATTTTACAAACACTGTGCGTCAATGAAAAAAGGGAAACCAGTTTGAGAGAAAAGAGGAAAAAAGCGAAACAACCAAACTCCAGAAATGCTTGGAAAGCGGACTTGAAACTCCCAAGATGAAAATGATATAGAAACACACGGATTCGTTCGCTGGAATTGTGAGAAGAAAACATTGTCGCACCTGTAGTAAGTTGAAAAAGAGAAGAAAAACAAAAGCCCCGTGTAGGAAAGGAATACAACCAGCGGAATAGAAAGAACTGATCATTATTTAGATTTTGTGAATAACCCCCTACAATGTACTCGTAGCAAACAGCTGCTAAGGTGTGTGCAAAGCGAATTACCAGAAATGAAACCAGATTAGGGTCATAGGTCAAATGTCAAAATGAAATGAACATGAACAACTTCTAGGGTAGTATCACTTTAACGCTAAACTAAAAGGGATCTTTCCTCTCTGGACGGAAGAGATCTGCTTGCCATCATACGAGAAAAAAAAATACATGA] [-] EMBL BX627456 [GTATAGTAAGTGATCGCAGCTAAACATGACACCATATTTTACAAACACTGTGCGTCAATGAAAAAAGGGAAACCAGTTTGAGAGAAAAGAGGAAAAAAGCGAAACAACCAAACTCCAGAAATGCTTGGAAAGCGGACTTGAAACTCCCAAGATGAAAATGATATAGAAACACACGGATTCGTTCGCTGGAATTGTGAGAAGAAAACATTGTCGCACCTGTAGTAAGTTGAAAAAGAGAAGAAAAACAAAAGCCCCGTGTAGGAAAGGAATACAACCAGCGGAATAGAAAGAACTGATCATTATTTAGATTTTGTGAATAACCCCCTACAATGTACTCGTAGCAAACAGCTGCTAAGGTGTGTGCAAAGCGAATTACCAGAAATGAAACCAGATTAGGGTCATAGGTCAAATGTCAAAATGAAATGAACATGAACAACTTCTAGGGTAGTATCACTTTAACGCTAAACTAAAAGGGATCTTTCCTCTCTGGACGGAAGAGATCTGCTTGCCATCATACGAGAAAAAAAAATACATGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5432#0 AGAATGGTGATCGTAGGCAAGAACTAGAGTGCTGATGGAGTCGTATTGTGAAAGTATAGT 60 consensus_5432#1 -----------------------------------------------------GTATAGT 7 ******* consensus_5432#0 AAGTGATCGCAGCTAAACATGACACCACATTTTACAAACACTGTGCGTCAATGAAAAAAG 120 consensus_5432#1 AAGTGATCGCAGCTAAACATGACACCATATTTTACAAACACTGTGCGTCAATGAAAAAAG 67 *************************** ******************************** consensus_5432#0 GGAACCCGGTTTGAGAGAAAAGAGAAAAAAAAAGCGAAACAACCAAACTCCAGAAA---- 176 consensus_5432#1 GGAAACCAGTTTGAGAGAAAAGAGGAAAAAA--GCGAAACAACCAAACTCCAGAAATGCT 125 **** ** **************** ****** *********************** consensus_5432#0 ------GCGAACTTGAAACTCCCAAGATAAAAATGATATAGAAACACACGGATTCGTTCG 230 consensus_5432#1 TGGAAAGCGGACTTGAAACTCCCAAGATGAAAATGATATAGAAACACACGGATTCGTTCG 185 *** ****************** ******************************* consensus_5432#0 CAGGAATTGTGAGAAGAAAACATTGTCGCACCTGTAGTAAGTTGAAAAAGAGAAGAAAAA 290 consensus_5432#1 CTGGAATTGTGAGAAGAAAACATTGTCGCACCTGTAGTAAGTTGAAAAAGAGAAGAAAAA 245 * ********************************************************** consensus_5432#0 CAAAAGCCCCGTGTAGGAAAGGAATACAACCAGCGGAATAGAAAGAACTGATCATTATTT 350 consensus_5432#1 CAAAAGCCCCGTGTAGGAAAGGAATACAACCAGCGGAATAGAAAGAACTGATCATTATTT 305 ************************************************************ consensus_5432#0 AGATTTTGTGAATAACCCCCTACAATGTACTCGTAGCAAACAGCTGCTAAGGTGTGTGCA 410 consensus_5432#1 AGATTTTGTGAATAACCCCCTACAATGTACTCGTAGCAAACAGCTGCTAAGGTGTGTGCA 365 ************************************************************ consensus_5432#0 AAGCGAATTACCAGAAATGAAACCAGATTAGGGTCATAGGTCAAATGTCAAAATGAAATG 470 consensus_5432#1 AAGCGAATTACCAGAAATGAAACCAGATTAGGGTCATAGGTCAAATGTCAAAATGAAATG 425 ************************************************************ consensus_5432#0 AACATGAACAACTTCTAGGGTAGTATCACTTTAACGCTAAACTAAAAGGGATCTTTCCTC 530 consensus_5432#1 AACATGAACAACTTCTAGGGTAGTATCACTTTAACGCTAAACTAAAAGGGATCTTTCCTC 485 ************************************************************ consensus_5432#0 TCTGGACGGAAGAGATCTGCTTGCCATCATACGAGAAAAAAAAACACATGACGGCTAATA 590 consensus_5432#1 TCTGGACGGAAGAGATCTGCTTGCCATCATACGAGAAAAAAAAATACATGA--------- 536 ******************************************** ****** consensus_5432#0 TGTAAGCGTTTAGTATTTTAGTAGAGTAACGTATAAGTTATGTCTCTTTATGGTTTTTTG 650 consensus_5432#1 ------------------------------------------------------------ consensus_5432#0 TTTGTTTTATTTTTGNTTTTAAATGCAGGGTGCATTGGAGCTAGAACCCACGAGAAATGA 710 consensus_5432#1 ------------------------------------------------------------ consensus_5432#0 TCTTAGTGTAGTAGCAGCGGAAGTAGTAGTAAGAGGATGAACAAGAAGCAAAGTGCAGCA 770 consensus_5432#1 ------------------------------------------------------------ consensus_5432#0 AACACGGTTTTGTAATGTCGTACGGCTATCGTACCGAAAGATTGAATTTCAAACCAATCG 830 consensus_5432#1 ------------------------------------------------------------ consensus_5432#0 TCCATTTGTTTGGACGGTTCACAGATTTAGTTTATTTGTTTGTTTGTTTGTTTTATTTTT 890 consensus_5432#1 ------------------------------------------------------------ consensus_5432#0 TTTATTTAAAAACAAAACTAATTTCTATTGTTTGTTTGCATATAGATTTTGTTTATTTAG 950 consensus_5432#1 ------------------------------------------------------------ consensus_5432#0 TTGTCTTGTATTATTTATAAACAGTCCCAACAATTACCAACACATCTCCTCTTCCCTTTA 1010 consensus_5432#1 ------------------------------------------------------------ consensus_5432#0 TACTTAAACCATGAGTAGATGTACATGAACAGACGTAATAATAAAATTGAAAAAAAAAAA 1070 consensus_5432#1 ------------------------------------------------------------ consensus_5432#0 ACACAACAAACCATGTCACAACGTAAATGACATACATTTTCTGTAGCAACTTGCAAACAG 1130 consensus_5432#1 ------------------------------------------------------------ consensus_5432#0 AGCTGTAAACAGAGACGATAACAACTGAGGGAATTTGATAAAAAAAAACCGATCTGTGTA 1190 consensus_5432#1 ------------------------------------------------------------ consensus_5432#0 AAATTGATCGATAAATTATTAAAATATTTAAAACCCGAAAAAAAAAAAAAAAAAAAAAAA 1250 consensus_5432#1 ------------------------------------------------------------ consensus_5432#0 AACGGACGCGTGGGCGG 1267 consensus_5432#1 ----------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||