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Anopheles gambiae
cluster # 5443 cluster # 5443       Sequences # 4       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5443#0 length = 673 sequences # 2  
consensus_5443#1 length = 570 sequences # 1  
consensus_5443#2 length = 380 sequences # 1  

consensusID : consensus_5443#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 673
fasta sequence
                              [CCGCCCACGCGTCCGCCCACGCGTCCGATCATCACCACCACCACTACGGAAACCTTCCTGTGGGGTAGGGTGTAGGGTGAAGGGTCTTCAGAGGGTGATACAATCGCCCCTGTGGCTCTGGTACGGAAAAGAAAAACCATCTCCTTCCGTGGCGTCTTGTGTGTCTCGCTGCGGAAGAGCTGCTGCATAAGTAGGCCAATGTTATCTCCCACCACCGGGGGCACTGCGAACAAGCGATAACATAACGGAGGAAAAATGCTGGACGCATATGTTGGGTACGATCTGAGCATTGCCACCGAACCGGACGACATCCCGAAAACGAACGACACGGTGTGGATACTGGGCAAGCAATACAATGCCACCGATGATCTCGAAGCAATAAGACAGGATGTGCAGTCCCGGCTGTGGTGCACCTATCGCCGCGGGTTCGTCCCGATCGGCAACACGCAGCTCACGACGGACAAGGGCTGGGGCTGCATGTTGCGCTGCGGGCAGATGGTGCTGGCTCAGGCCCTGCTACAGCTGCACCTGGGCCGGGACTGGGTGTGGGAGGCGGAAACGCGCGACGACATCTATCTGAACATCGTCAATCGGTTCGAGGACAGCAAGCAGGCCCCGTTCTCGCTGCACCAGATCGCACTGATGGGCGACTCGTCCGAGGAGAAGCGGATTG]

[+] EMBL BM591773             [CCGCCCACGCGTCCGCCCACGCGTCCGATCATCACCACCACCACTACGGAAACCTTCCTGTGGGGTAGGGTGTAGGGTGAAGGGTCTTCAGAGGGTGATACAATCGCCCCTGTGGCTCTGGTACGGAAAAGAAAAACCATCTCCTTCCGTGGCGTCTTGTGTGTCTCGCTGCGGAAGAGCTGCTGCATAAGTAGGCCAATGTTATCTCCCACCACCGGGGGCACTGCGAACAAGCGATAACATAACGGAGGAAAAATGCTGGACGCATATGTTGGGTACGATCTGAGCATTGCCACCGAACCGGACGACATCCCGAAAACGAACGACACGGTGTGGATACTGGGCAAGCAATACAATGCCACCGATGATCTCGAAGCAATAAGACAGGATGTGCAGTCCCGGCTGTGGTGCACCTATCGCCGCGGGTTCGTCCCGATCGGCAACACGCAGCTCACGACGGACAAGGGCTGGGGCTGCATGTTGCGCTGCGGGCAGATGGTGCTGGCTCAGGCCCTGCTACAGCTGCACCTGGGCCGGGACTGGGTGTGGGAGGCGGAAACGCGCGACGACATCTATCTGAACATCGTCAATCGGTTCGAGGACAGCAAGCAGGCCCCGTTCTCGCTGCACCAGATCGCACTGATGGGCGACTCGTCCGAGGAGAAGCGGATTG]
[+] EMBL BX623820             [                                                                                                                                                                                                                                                                                         TCTGAGCATTGCCACCGAACCGGACGACATCCCGAAAACGAACGACACGGTGTGGATACTGGGCAAGCAATACAATGCCTCCGATGATCTCGAAGCAATAAGACAGGATGTGCAGTCCCGGTTGTGGTGCACCTATCGCCGCGGGTTCGTCCCGATCGGCAACACGCAGCTCACGACGGACAAGGGCTGGGGCTGCATGTTGCGCTGCGGGCAGATGGTGCTGGCCCAGGCCCTGCTACAGCTGCACCTGGGCCGGGACTGGGTGTGGGAAGCGGAAACGCNCGACGACATCTATCT                                                                                               ]


>consensus_5443#0 CCGCCCACGCGTCCGCCCACGCGTCCGATCATCACCACCACCACTACGGAAACCTTCCTG TGGGGTAGGGTGTAGGGTGAAGGGTCTTCAGAGGGTGATACAATCGCCCCTGTGGCTCTG GTACGGAAAAGAAAAACCATCTCCTTCCGTGGCGTCTTGTGTGTCTCGCTGCGGAAGAGC TGCTGCATAAGTAGGCCAATGTTATCTCCCACCACCGGGGGCACTGCGAACAAGCGATAA CATAACGGAGGAAAAATGCTGGACGCATATGTTGGGTACGATCTGAGCATTGCCACCGAA CCGGACGACATCCCGAAAACGAACGACACGGTGTGGATACTGGGCAAGCAATACAATGCC ACCGATGATCTCGAAGCAATAAGACAGGATGTGCAGTCCCGGCTGTGGTGCACCTATCGC CGCGGGTTCGTCCCGATCGGCAACACGCAGCTCACGACGGACAAGGGCTGGGGCTGCATG TTGCGCTGCGGGCAGATGGTGCTGGCTCAGGCCCTGCTACAGCTGCACCTGGGCCGGGAC TGGGTGTGGGAGGCGGAAACGCGCGACGACATCTATCTGAACATCGTCAATCGGTTCGAG GACAGCAAGCAGGCCCCGTTCTCGCTGCACCAGATCGCACTGATGGGCGACTCGTCCGAG GAGAAGCGGATTG



consensusID : consensus_5443#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 570
fasta sequence
                              [CAAGAATTGCCCGAGGCTTAACTGGACGACATCCGAAAACGAACGACACGGTGTGGATACTGGGCAAGCAATACAATGCCTCCGATGATCTCGAAGCAATAAGACAGGATGTGCAGTCCCGGTTGTGGTGCACCTATCGCCGCGGGTTCGTCCCGATCGGCAACACGCAGCTCACGACGGACAAGGGCTGGGGCTGCATGGTTGCGCTGCGTGGCAGATGGTGCTTGGCCCCAGGCCCTGCTAACATGCTTGCACCTGGTGCCTGGGAACTTGGGTTGTTGGGAAGTGCCGTGAAACTGCGCGACGACATCTATCTGAACGATCGTCAATCCGGTTCGAGGACAGCAAGCAGNGCCCCTGTTCTCGCTGCACCAGATCGCACTGATGGGCGACTCTTCGGAGGAAAAGCGGATTGGCGAGTGGTTCGGGCCGAACACGGTCGCGCAGGTGTTGAAGAAATTGGTAAAATTTGATGATTGGTGCCGGCTGGTCATTCATGTAGCTTTGGACAATACGGTGGCAACGGACGAAATAGTGGAACTGTGCGTGGATAAGAAAGAACCGGAAGCA]

[+] EMBL AL934850             [CAAGAATTGCCCGAGGCTTAACTGGACGACATCCGAAAACGAACGACACGGTGTGGATACTGGGCAAGCAATACAATGCCTCCGATGATCTCGAAGCAATAAGACAGGATGTGCAGTCCCGGTTGTGGTGCACCTATCGCCGCGGGTTCGTCCCGATCGGCAACACGCAGCTCACGACGGACAAGGGCTGGGGCTGCATGGTTGCGCTGCGTGGCAGATGGTGCTTGGCCCCAGGCCCTGCTAACATGCTTGCACCTGGTGCCTGGGAACTTGGGTTGTTGGGAAGTGCCGTGAAACTGCGCGACGACATCTATCTGAACGATCGTCAATCCGGTTCGAGGACAGCAAGCAGNGCCCCTGTTCTCGCTGCACCAGATCGCACTGATGGGCGACTCTTCGGAGGAAAAGCGGATTGGCGAGTGGTTCGGGCCGAACACGGTCGCGCAGGTGTTGAAGAAATTGGTAAAATTTGATGATTGGTGCCGGCTGGTCATTCATGTAGCTTTGGACAATACGGTGGCAACGGACGAAATAGTGGAACTGTGCGTGGATAAGAAAGAACCGGAAGCA]


>consensus_5443#1 CAAGAATTGCCCGAGGCTTAACTGGACGACATCCGAAAACGAACGACACGGTGTGGATAC TGGGCAAGCAATACAATGCCTCCGATGATCTCGAAGCAATAAGACAGGATGTGCAGTCCC GGTTGTGGTGCACCTATCGCCGCGGGTTCGTCCCGATCGGCAACACGCAGCTCACGACGG ACAAGGGCTGGGGCTGCATGGTTGCGCTGCGTGGCAGATGGTGCTTGGCCCCAGGCCCTG CTAACATGCTTGCACCTGGTGCCTGGGAACTTGGGTTGTTGGGAAGTGCCGTGAAACTGC GCGACGACATCTATCTGAACGATCGTCAATCCGGTTCGAGGACAGCAAGCAGNGCCCCTG TTCTCGCTGCACCAGATCGCACTGATGGGCGACTCTTCGGAGGAAAAGCGGATTGGCGAG TGGTTCGGGCCGAACACGGTCGCGCAGGTGTTGAAGAAATTGGTAAAATTTGATGATTGG TGCCGGCTGGTCATTCATGTAGCTTTGGACAATACGGTGGCAACGGACGAAATAGTGGAA CTGTGCGTGGATAAGAAAGAACCGGAAGCA



consensusID : consensus_5443#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 380
fasta sequence
                              [CAGCAGAATCCCCANGAGNTTAACACGGTCGCGCAGGTGTTGCNAGAAATTGGTAAAATTTGATGATTGGTGCCGGCTGGTCATTCATGCTAGCTTTGGACAATACGGTGGCAACGGACGAAATAGTGGAACTGTGCGTGGATAAGAAAGAACCGGAAGCATGGAAGCCGCTACTGCTCATCATCCCCCTCCGGCTGGGGCTGAGCGAGGTGAACCCGATCTACATCGAGGGGCTGAAGAAATGTTTCCAGCTGCCGGGCAGTTGCGGCATGATCGGCGGCCGCCCCAAGCCAGGCCCTCTACTTCATCGGGTACGTGGGCGGGGAAGCCCTCTACCTGGATCCGCACACGGTTCAGCGGGTGGGCACGGTCGGCAGCAA]

[+] EMBL BX469133             [CAGCAGAATCCCCANGAGNTTAACACGGTCGCGCAGGTGTTGCNAGAAATTGGTAAAATTTGATGATTGGTGCCGGCTGGTCATTCATGCTAGCTTTGGACAATACGGTGGCAACGGACGAAATAGTGGAACTGTGCGTGGATAAGAAAGAACCGGAAGCATGGAAGCCGCTACTGCTCATCATCCCCCTCCGGCTGGGGCTGAGCGAGGTGAACCCGATCTACATCGAGGGGCTGAAGAAATGTTTCCAGCTGCCGGGCAGTTGCGGCATGATCGGCGGCCGCCCCAAGCCAGGCCCTCTACTTCATCGGGTACGTGGGCGGGGAAGCCCTCTACCTGGATCCGCACACGGTTCAGCGGGTGGGCACGGTCGGCAGCAA]


>consensus_5443#2 CAGCAGAATCCCCANGAGNTTAACACGGTCGCGCAGGTGTTGCNAGAAATTGGTAAAATT TGATGATTGGTGCCGGCTGGTCATTCATGCTAGCTTTGGACAATACGGTGGCAACGGACG AAATAGTGGAACTGTGCGTGGATAAGAAAGAACCGGAAGCATGGAAGCCGCTACTGCTCA TCATCCCCCTCCGGCTGGGGCTGAGCGAGGTGAACCCGATCTACATCGAGGGGCTGAAGA AATGTTTCCAGCTGCCGGGCAGTTGCGGCATGATCGGCGGCCGCCCCAAGCCAGGCCCTC TACTTCATCGGGTACGTGGGCGGGGAAGCCCTCTACCTGGATCCGCACACGGTTCAGCGG GTGGGCACGGTCGGCAGCAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5443#0      CCGCCCACGCGTCCGCCCACGCGTCCGATCATCACCACCACCACTACGGAAACCTTCCTG 60
consensus_5443#1      ------------------------------------------------------------
consensus_5443#2      ------------------------------------------------------------
                                                                                  

consensus_5443#0      TGGGGTAGGGTGTAGGGTGAAGGGTCTTCAGAGGGTGATACAATCGCCCCTGTGGCTCTG 120
consensus_5443#1      ------------------------------------------------------------
consensus_5443#2      ------------------------------------------------------------
                                                                                  

consensus_5443#0      GTACGGAAAAGAAAAACCATCTCCTTCCGTGGCGTCTTGTGTGTCTCGCTGCGGAAGAGC 180
consensus_5443#1      ------------------------------------------------------------
consensus_5443#2      ------------------------------------------------------------
                                                                                  

consensus_5443#0      TGCTGCATAAGTAGGCCAATGTTATCTCCCACCACCGGGGGCACTGCGAACAAGCGATAA 240
consensus_5443#1      ------------------------------------------------------------
consensus_5443#2      -------------------------------------------CAGCAGAATCCCCANGA 17
                                                                                  

consensus_5443#0      CATAACGGAGGAAAAATGCTGGACGCATATGTTGGGTACGATCTGAGCATTGCC----AC 296
consensus_5443#1      -------------------------------------------CAAGAATTGCCCGAGGC 17
consensus_5443#2      GNTTAACACGGTCGCGCAGGTGTTGCNAGAAATTGGTAAAATTTGATGATTGGT----GC 73
                                                                   *  ****       *

consensus_5443#0      CGAACCGGACGACATCCCGAAAACGAACGACACGGTGTGGATACTGGGCAAGCAATACAA 356
consensus_5443#1      TTAACTGGACGACATCC-GAAAACGAACGACACGGTGTGGATACTGGGCAAGCAATACAA 76
consensus_5443#2      CGGCTGGTCATTCATGCTAGCTTTGGACAATACGGTGGCAA-------CGGACGAAATAG 126
                            *     *** *       * ** * ******   *       *   * * * * 

consensus_5443#0      TGCCACCGATGATCTCGAAGCAATAAGACAGGATGTGCAGTCCCGGCTGTGGTGCACCTA 416
consensus_5443#1      TGCCTCCGATGATCTCGAAGCAATAAGACAGGATGTGCAGTCCCGGTTGTGGTGCACCTA 136
consensus_5443#2      TGGAACTGT--GCGTGGATAAGAAAGAACCGGAAGCATGGAAGCCGCTACTGCTCATCAT 184
                      **   * *      * **    * *  ** *** *    *   * * *   *  ** *  

consensus_5443#0      TCGCCGCGGGTTCGTCCCGATCGGCA-ACACGCAGCTCACGACGGACAAGGGCTGGGGCT 475
consensus_5443#1      TCGCCGCGGGTTCGTCCCGATCGGCA-ACACGCAGCTCACGACGGACAAGGGCTGGGGCT 195
consensus_5443#2      CCCCCTCCGGCTGGGGCTGAGCGAGGTGAACCCGATCTACATCG---AGGGGCTGAAGAA 241
                       * ** * ** * *  * ** **      ** *     **  **   * ******  *  

consensus_5443#0      GCATG-TTGCGCTGCG-GGCAGATGGTGCTGG--CTCAGGCCCTGCTA---CAGCTGCAC 528
consensus_5443#1      GCATGGTTGCGCTGCGTGGCAGATGGTGCTTGGCCCCAGGCCCTGCTAACATGCTTGCAC 255
consensus_5443#2      ATGTT-TCCAGCTGCCGGGCAGTTGCGGCATGATCGGCGGCCGCCCCA----AGCCAGGC 296
                         *  *   *****  ***** **  **  *  *   ****   * *           *

consensus_5443#0      CTGG-GCCGGGA---CTGGGTG--TGGGAGGCG----GAAAC-GCGCGACGACATCTATC 577
consensus_5443#1      CTGGTGCCTGGGAACTTGGGTTGTTGGGAAGTGCCGTGAAACTGCGCGACGACATCTATC 315
consensus_5443#2      CCTCTACTTCA----TCGGGTACGTGGGCGGGG-----AAGC----CCTCTACCTGGATC 343
                      *     *          ****   ****  * *     ** *    *  * ** *  ***

consensus_5443#0      TGAAC-ATCGTCAATC-GGTTCGAGGACAGCAAGCAGG--CCCCGTTCTCGCTGCACCAG 633
consensus_5443#1      TGAACGATCGTCAATCCGGTTCGAGGACAGCAAGCAGNGCCCCTGTTCTCGCTGCACCAG 375
consensus_5443#2      CGCAC-ACGGTTCAGCGGGT--GGGCACGGTCGGCAGCAA-------------------- 380
                       * ** *  **  * * ***  * * ** *   ****                       

consensus_5443#0      ATCGCACTGATGGGCGACTCGTCCGAGGAGAAGCGGATTG-------------------- 673
consensus_5443#1      ATCGCACTGATGGGCGACTCTTCGGAGGAAAAGCGGATTGGCGAGTGGTTCGGGCCGAAC 435
consensus_5443#2      ------------------------------------------------------------
                                                                                  

consensus_5443#0      ------------------------------------------------------------
consensus_5443#1      ACGGTCGCGCAGGTGTTGAAGAAATTGGTAAAATTTGATGATTGGTGCCGGCTGGTCATT 495
consensus_5443#2      ------------------------------------------------------------
                                                                                  

consensus_5443#0      ------------------------------------------------------------
consensus_5443#1      CATGTAGCTTTGGACAATACGGTGGCAACGGACGAAATAGTGGAACTGTGCGTGGATAAG 555
consensus_5443#2      ------------------------------------------------------------
                                                                                  

consensus_5443#0      ---------------
consensus_5443#1      AAAGAACCGGAAGCA 570
consensus_5443#2      ---------------
                                     




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)