These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5443#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 673 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGATCATCACCACCACCACTACGGAAACCTTCCTGTGGGGTAGGGTGTAGGGTGAAGGGTCTTCAGAGGGTGATACAATCGCCCCTGTGGCTCTGGTACGGAAAAGAAAAACCATCTCCTTCCGTGGCGTCTTGTGTGTCTCGCTGCGGAAGAGCTGCTGCATAAGTAGGCCAATGTTATCTCCCACCACCGGGGGCACTGCGAACAAGCGATAACATAACGGAGGAAAAATGCTGGACGCATATGTTGGGTACGATCTGAGCATTGCCACCGAACCGGACGACATCCCGAAAACGAACGACACGGTGTGGATACTGGGCAAGCAATACAATGCCACCGATGATCTCGAAGCAATAAGACAGGATGTGCAGTCCCGGCTGTGGTGCACCTATCGCCGCGGGTTCGTCCCGATCGGCAACACGCAGCTCACGACGGACAAGGGCTGGGGCTGCATGTTGCGCTGCGGGCAGATGGTGCTGGCTCAGGCCCTGCTACAGCTGCACCTGGGCCGGGACTGGGTGTGGGAGGCGGAAACGCGCGACGACATCTATCTGAACATCGTCAATCGGTTCGAGGACAGCAAGCAGGCCCCGTTCTCGCTGCACCAGATCGCACTGATGGGCGACTCGTCCGAGGAGAAGCGGATTG] [+] EMBL BM591773 [CCGCCCACGCGTCCGCCCACGCGTCCGATCATCACCACCACCACTACGGAAACCTTCCTGTGGGGTAGGGTGTAGGGTGAAGGGTCTTCAGAGGGTGATACAATCGCCCCTGTGGCTCTGGTACGGAAAAGAAAAACCATCTCCTTCCGTGGCGTCTTGTGTGTCTCGCTGCGGAAGAGCTGCTGCATAAGTAGGCCAATGTTATCTCCCACCACCGGGGGCACTGCGAACAAGCGATAACATAACGGAGGAAAAATGCTGGACGCATATGTTGGGTACGATCTGAGCATTGCCACCGAACCGGACGACATCCCGAAAACGAACGACACGGTGTGGATACTGGGCAAGCAATACAATGCCACCGATGATCTCGAAGCAATAAGACAGGATGTGCAGTCCCGGCTGTGGTGCACCTATCGCCGCGGGTTCGTCCCGATCGGCAACACGCAGCTCACGACGGACAAGGGCTGGGGCTGCATGTTGCGCTGCGGGCAGATGGTGCTGGCTCAGGCCCTGCTACAGCTGCACCTGGGCCGGGACTGGGTGTGGGAGGCGGAAACGCGCGACGACATCTATCTGAACATCGTCAATCGGTTCGAGGACAGCAAGCAGGCCCCGTTCTCGCTGCACCAGATCGCACTGATGGGCGACTCGTCCGAGGAGAAGCGGATTG] [+] EMBL BX623820 [ TCTGAGCATTGCCACCGAACCGGACGACATCCCGAAAACGAACGACACGGTGTGGATACTGGGCAAGCAATACAATGCCTCCGATGATCTCGAAGCAATAAGACAGGATGTGCAGTCCCGGTTGTGGTGCACCTATCGCCGCGGGTTCGTCCCGATCGGCAACACGCAGCTCACGACGGACAAGGGCTGGGGCTGCATGTTGCGCTGCGGGCAGATGGTGCTGGCCCAGGCCCTGCTACAGCTGCACCTGGGCCGGGACTGGGTGTGGGAAGCGGAAACGCNCGACGACATCTATCT ] consensusID : consensus_5443#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 570 fasta sequence [CAAGAATTGCCCGAGGCTTAACTGGACGACATCCGAAAACGAACGACACGGTGTGGATACTGGGCAAGCAATACAATGCCTCCGATGATCTCGAAGCAATAAGACAGGATGTGCAGTCCCGGTTGTGGTGCACCTATCGCCGCGGGTTCGTCCCGATCGGCAACACGCAGCTCACGACGGACAAGGGCTGGGGCTGCATGGTTGCGCTGCGTGGCAGATGGTGCTTGGCCCCAGGCCCTGCTAACATGCTTGCACCTGGTGCCTGGGAACTTGGGTTGTTGGGAAGTGCCGTGAAACTGCGCGACGACATCTATCTGAACGATCGTCAATCCGGTTCGAGGACAGCAAGCAGNGCCCCTGTTCTCGCTGCACCAGATCGCACTGATGGGCGACTCTTCGGAGGAAAAGCGGATTGGCGAGTGGTTCGGGCCGAACACGGTCGCGCAGGTGTTGAAGAAATTGGTAAAATTTGATGATTGGTGCCGGCTGGTCATTCATGTAGCTTTGGACAATACGGTGGCAACGGACGAAATAGTGGAACTGTGCGTGGATAAGAAAGAACCGGAAGCA] [+] EMBL AL934850 [CAAGAATTGCCCGAGGCTTAACTGGACGACATCCGAAAACGAACGACACGGTGTGGATACTGGGCAAGCAATACAATGCCTCCGATGATCTCGAAGCAATAAGACAGGATGTGCAGTCCCGGTTGTGGTGCACCTATCGCCGCGGGTTCGTCCCGATCGGCAACACGCAGCTCACGACGGACAAGGGCTGGGGCTGCATGGTTGCGCTGCGTGGCAGATGGTGCTTGGCCCCAGGCCCTGCTAACATGCTTGCACCTGGTGCCTGGGAACTTGGGTTGTTGGGAAGTGCCGTGAAACTGCGCGACGACATCTATCTGAACGATCGTCAATCCGGTTCGAGGACAGCAAGCAGNGCCCCTGTTCTCGCTGCACCAGATCGCACTGATGGGCGACTCTTCGGAGGAAAAGCGGATTGGCGAGTGGTTCGGGCCGAACACGGTCGCGCAGGTGTTGAAGAAATTGGTAAAATTTGATGATTGGTGCCGGCTGGTCATTCATGTAGCTTTGGACAATACGGTGGCAACGGACGAAATAGTGGAACTGTGCGTGGATAAGAAAGAACCGGAAGCA] consensusID : consensus_5443#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 380 fasta sequence [CAGCAGAATCCCCANGAGNTTAACACGGTCGCGCAGGTGTTGCNAGAAATTGGTAAAATTTGATGATTGGTGCCGGCTGGTCATTCATGCTAGCTTTGGACAATACGGTGGCAACGGACGAAATAGTGGAACTGTGCGTGGATAAGAAAGAACCGGAAGCATGGAAGCCGCTACTGCTCATCATCCCCCTCCGGCTGGGGCTGAGCGAGGTGAACCCGATCTACATCGAGGGGCTGAAGAAATGTTTCCAGCTGCCGGGCAGTTGCGGCATGATCGGCGGCCGCCCCAAGCCAGGCCCTCTACTTCATCGGGTACGTGGGCGGGGAAGCCCTCTACCTGGATCCGCACACGGTTCAGCGGGTGGGCACGGTCGGCAGCAA] [+] EMBL BX469133 [CAGCAGAATCCCCANGAGNTTAACACGGTCGCGCAGGTGTTGCNAGAAATTGGTAAAATTTGATGATTGGTGCCGGCTGGTCATTCATGCTAGCTTTGGACAATACGGTGGCAACGGACGAAATAGTGGAACTGTGCGTGGATAAGAAAGAACCGGAAGCATGGAAGCCGCTACTGCTCATCATCCCCCTCCGGCTGGGGCTGAGCGAGGTGAACCCGATCTACATCGAGGGGCTGAAGAAATGTTTCCAGCTGCCGGGCAGTTGCGGCATGATCGGCGGCCGCCCCAAGCCAGGCCCTCTACTTCATCGGGTACGTGGGCGGGGAAGCCCTCTACCTGGATCCGCACACGGTTCAGCGGGTGGGCACGGTCGGCAGCAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5443#0 CCGCCCACGCGTCCGCCCACGCGTCCGATCATCACCACCACCACTACGGAAACCTTCCTG 60 consensus_5443#1 ------------------------------------------------------------ consensus_5443#2 ------------------------------------------------------------ consensus_5443#0 TGGGGTAGGGTGTAGGGTGAAGGGTCTTCAGAGGGTGATACAATCGCCCCTGTGGCTCTG 120 consensus_5443#1 ------------------------------------------------------------ consensus_5443#2 ------------------------------------------------------------ consensus_5443#0 GTACGGAAAAGAAAAACCATCTCCTTCCGTGGCGTCTTGTGTGTCTCGCTGCGGAAGAGC 180 consensus_5443#1 ------------------------------------------------------------ consensus_5443#2 ------------------------------------------------------------ consensus_5443#0 TGCTGCATAAGTAGGCCAATGTTATCTCCCACCACCGGGGGCACTGCGAACAAGCGATAA 240 consensus_5443#1 ------------------------------------------------------------ consensus_5443#2 -------------------------------------------CAGCAGAATCCCCANGA 17 consensus_5443#0 CATAACGGAGGAAAAATGCTGGACGCATATGTTGGGTACGATCTGAGCATTGCC----AC 296 consensus_5443#1 -------------------------------------------CAAGAATTGCCCGAGGC 17 consensus_5443#2 GNTTAACACGGTCGCGCAGGTGTTGCNAGAAATTGGTAAAATTTGATGATTGGT----GC 73 * **** * consensus_5443#0 CGAACCGGACGACATCCCGAAAACGAACGACACGGTGTGGATACTGGGCAAGCAATACAA 356 consensus_5443#1 TTAACTGGACGACATCC-GAAAACGAACGACACGGTGTGGATACTGGGCAAGCAATACAA 76 consensus_5443#2 CGGCTGGTCATTCATGCTAGCTTTGGACAATACGGTGGCAA-------CGGACGAAATAG 126 * *** * * ** * ****** * * * * * * consensus_5443#0 TGCCACCGATGATCTCGAAGCAATAAGACAGGATGTGCAGTCCCGGCTGTGGTGCACCTA 416 consensus_5443#1 TGCCTCCGATGATCTCGAAGCAATAAGACAGGATGTGCAGTCCCGGTTGTGGTGCACCTA 136 consensus_5443#2 TGGAACTGT--GCGTGGATAAGAAAGAACCGGAAGCATGGAAGCCGCTACTGCTCATCAT 184 ** * * * ** * * ** *** * * * * * * ** * consensus_5443#0 TCGCCGCGGGTTCGTCCCGATCGGCA-ACACGCAGCTCACGACGGACAAGGGCTGGGGCT 475 consensus_5443#1 TCGCCGCGGGTTCGTCCCGATCGGCA-ACACGCAGCTCACGACGGACAAGGGCTGGGGCT 195 consensus_5443#2 CCCCCTCCGGCTGGGGCTGAGCGAGGTGAACCCGATCTACATCG---AGGGGCTGAAGAA 241 * ** * ** * * * ** ** ** * ** ** * ****** * consensus_5443#0 GCATG-TTGCGCTGCG-GGCAGATGGTGCTGG--CTCAGGCCCTGCTA---CAGCTGCAC 528 consensus_5443#1 GCATGGTTGCGCTGCGTGGCAGATGGTGCTTGGCCCCAGGCCCTGCTAACATGCTTGCAC 255 consensus_5443#2 ATGTT-TCCAGCTGCCGGGCAGTTGCGGCATGATCGGCGGCCGCCCCA----AGCCAGGC 296 * * ***** ***** ** ** * * **** * * * consensus_5443#0 CTGG-GCCGGGA---CTGGGTG--TGGGAGGCG----GAAAC-GCGCGACGACATCTATC 577 consensus_5443#1 CTGGTGCCTGGGAACTTGGGTTGTTGGGAAGTGCCGTGAAACTGCGCGACGACATCTATC 315 consensus_5443#2 CCTCTACTTCA----TCGGGTACGTGGGCGGGG-----AAGC----CCTCTACCTGGATC 343 * * **** **** * * ** * * * ** * *** consensus_5443#0 TGAAC-ATCGTCAATC-GGTTCGAGGACAGCAAGCAGG--CCCCGTTCTCGCTGCACCAG 633 consensus_5443#1 TGAACGATCGTCAATCCGGTTCGAGGACAGCAAGCAGNGCCCCTGTTCTCGCTGCACCAG 375 consensus_5443#2 CGCAC-ACGGTTCAGCGGGT--GGGCACGGTCGGCAGCAA-------------------- 380 * ** * ** * * *** * * ** * **** consensus_5443#0 ATCGCACTGATGGGCGACTCGTCCGAGGAGAAGCGGATTG-------------------- 673 consensus_5443#1 ATCGCACTGATGGGCGACTCTTCGGAGGAAAAGCGGATTGGCGAGTGGTTCGGGCCGAAC 435 consensus_5443#2 ------------------------------------------------------------ consensus_5443#0 ------------------------------------------------------------ consensus_5443#1 ACGGTCGCGCAGGTGTTGAAGAAATTGGTAAAATTTGATGATTGGTGCCGGCTGGTCATT 495 consensus_5443#2 ------------------------------------------------------------ consensus_5443#0 ------------------------------------------------------------ consensus_5443#1 CATGTAGCTTTGGACAATACGGTGGCAACGGACGAAATAGTGGAACTGTGCGTGGATAAG 555 consensus_5443#2 ------------------------------------------------------------ consensus_5443#0 --------------- consensus_5443#1 AAAGAACCGGAAGCA 570 consensus_5443#2 --------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||