These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5457#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 687 fasta sequence [CCGCCCACGCGTCCGGTGAATTAAGTGGTTGAAAAACTAACGCGCAACCGTTTTGCCTTCGATTGTTGTTTGTTTCCAATACGCAAACGTAAAACGCAAAAATGGCAGAGGACGATCAACGACTTGCCTCTATTCAAAACGAATATCTCAACTTCCTTGATGACGAGGAAGACCAGGGTACATACACGGCCCACGTACGAAAAATGATCAACGATAAGAGTAAACGGTTGGTTGTAAATATTAACGACATCCGGCGGAAGAATCCAGGCCGTGCGTTGGCTCTGCTGAACAGCGCATTTGATGAGCAGCTGGCGTTTTCGCGAGCGTTGAAAGATTATGTTTCAACCATCGATATGAGCTACGCAAAGACGCAGGAAGACTTTCACGTAGCGTTCGAGGGAAGCTTTGGCAACAAGCATGTAACTCCACGCTCGTTGACATCGCGCTTTCTGGGTAATCTCGTGTGCGTCGAGGGTATCGTGACGAAGGTATCGCTTATCCGACCCAAAGTGGTCAAGAGTGTGCACTATTGTCCGGCGACGAAGAAGGTGATGGAACGCCGGTACACGGATCTCACTTCGTTTGAAGCCGTGCCGTCCAGTGCCGTCTACCCGACTAAGGATGACGATGGCAACCTGCTGGAGACGGAGTTTGGCCTGTCGGTGTACAAAGACCATCAAACGCTTA] [+] EMBL BM575466 [CCGCCCACGCGTCCGGTGAATTAAGTGGTTGAAAAACTAACGCGCAACCGTTTTGCCTTCGATTGTTGTTTGTTTCCAATACGCAAACGTAAAACGCAAAAATGGCAGAGGACGATCAACGACTTGCCTCTATTCAAAACGAATATCTCAACTTCCTTGATGACGAGGAAGACCAGGGTACATACACGGCCCACGTACGAAAAATGATCAACGATAAGAGTAAACGGTTGGTTGTAAATATTAACGACATCCGGCGGAAGAATCCAGGCCGTGCGTTGGCTCTGCTGAACAGCGCATTTGATGAGCAGCTGGCGTTTTCGCGAGCGTTGAAAGATTATGTTTCAACCATCGATATGAGCTACGCAAAGACGCAGGAAGACTTTCACGTAGCGTTCGAGGGAAGCTTTGGCAACAAGCATGTAACTCCACGCTCGTTGACATCGCGCTTTCTGGGTAATCTCGTGTGCGTCGAGGGTATCGTGACGAAGGTATCGCTTATCCGACCCAAAGTGGTCAAGAGTGTGCACTATTGTCCGGCGACGAAGAAGGTGATGGAACGCCGGTACACGGATCTCACTTCGTTTGAAGCCGTGCCGTCCAGTGCCGTCTACCCGACTAAGGATGACGATGGCAACCTGCTGGAGACGGAGTTTGGCCTGTCGGTGTACAAAGACCATCAAACGCTTA] consensusID : consensus_5457#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 668 fasta sequence [CCGCGGACGCGTGGGCGGACGCGTGGGTAAGAGTAAACGGTTGGTTGTAAATATTAACGACATCCGGCGGAAGAATCCAGGCCGTGCGTTGGCTCTGCTGAACAGCGCATTTGATGAGCAGCTGGCGTTTTCGCGAGCGTTGAAAGATTATGTTTCAACCATCGATATGAGCTACGCAAAGACGCAGGAAGACTTTCACGTAGCGTTCGAGGGAAGCTTTGGCAACAAGCATGTAACTCCACGCTCGTTGACATCGCGCTTTCTGGGTAATCTCGTGTGCGTCGAGGGTATCGTGACGAAGGTATCGCTTATCCGACCCAAAGTGGTCAAGAGTGTGCACTATTGTCCGGCGACGAAGAAGGTGATGGAACGCCGGTACACGGATCTCACTTCGTTTGAAGCCGTGCCGTCCAGTGCCGTCTACCCGACTAAGGGATGACGATGGCAACCTGCTGGAGACGGAGTTTGGGCCTGTCGGTGTACAAAGACCATCAAACGCTTAGCATTCAGGAAATGCCAGAGAAAGCCCCCGCGGGTCAGCTGCCCCGTTTCGGGGGGACGTTGTGTGCGACGATGATCTAGTTGATCGTTGCAAACCGGGCGATCGTGTACAGATCGTGGGTTAACTACCGTTGTCTGCCCGGAAAAGCAGGGTGGATACACAACGG] [+] EMBL BM587408 [CCGCGGACGCGTGGGCGGACGCGTGGGTAAGAGTAAACGGTTGGTTGTAAATATTAACGACATCCGGCGGAAGAATCCAGGCCGTGCGTTGGCTCTGCTGAACAGCGCATTTGATGAGCAGCTGGCGTTTTCGCGAGCGTTGAAAGATTATGTTTCAACCATCGATATGAGCTACGCAAAGACGCAGGAAGACTTTCACGTAGCGTTCGAGGGAAGCTTTGGCAACAAGCATGTAACTCCACGCTCGTTGACATCGCGCTTTCTGGGTAATCTCGTGTGCGTCGAGGGTATCGTGACGAAGGTATCGCTTATCCGACCCAAAGTGGTCAAGAGTGTGCACTATTGTCCGGCGACGAAGAAGGTGATGGAACGCCGGTACACGGATCTCACTTCGTTTGAAGCCGTGCCGTCCAGTGCCGTCTACCCGACTAAGGGATGACGATGGCAACCTGCTGGAGACGGAGTTTGGGCCTGTCGGTGTACAAAGACCATCAAACGCTTAGCATTCAGGAAATGCCAGAGAAAGCCCCCGCGGGTCAGCTGCCCCGTTTCGGGGGGACGTTGTGTGCGACGATGATCTAGTTGATCGTTGCAAACCGGGCGATCGTGTACAGATCGTGGGTTAACTACCGTTGTCTGCCCGGAAAAGCAGGGTGGATACACAACGG] consensusID : consensus_5457#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 655 fasta sequence [GTTGAAATTGTTGCCACGCCAGTCGGTCTGTGTGCTTGTACGTTTTACTTCGCTGTGCTCCGTGAATTAAGTGGGTGAAAAACTAACGCGCAACCGTTTTGCCTTCGATTGTTGTTTGTTTCCAATACGCAAACGTAAAACGCAAAAATGGCAGAGGACGATCAACGACTTGCCTCTATTCAAAACGAATATCTCAACTTCCTTGATGACGAGGAAGACCAGGGTACATACACGGCCCACGTACGAAAAATGATCAACGATAAGAGTAAACGGTTGGTTGTAAATATTAACGACATCCGGCGGAAGAATCCAGGCCGTGCGTTGGCTCTGCTGAACAGCGCATTTGATGAGCAGCTGGCGTTTTCGCGAGCGTTGAAAGATTATGTTTCAACCATCGATATGAGCTACGCAAAGACGCAGGAAGACTTTCACGTAGCGTTCGAGGGAAGCTTTGGCAACAAGCATGTAACTCCACGCTCGTTGACATCGCGCTTTCTGGGTAATCTCGTGTGCGTCGAGGGTATCGTGACGAAGGTATCGCTTATCCGACCCAAAGTGGTCAAGAGTGTGCACTATTGTCCGGCGACGAAGAAGGTGATGGAACGCCGGTACACGGATCTCACTTCGTTTGAAGCCGTGCCGTCCAGTGCCGTCT] [+] EMBL CNS08ZQ2 [GTTGAAATTGTTGCCACGCCAGTCGGTCTGTGTGCTTGTACGTTTTACTTCGCTGTGCTCCGTGAATTAAGTGGGTGAAAAACTAACGCGCAACCGTTTTGCCTTCGATTGTTGTTTGTTTCCAATACGCAAACGTAAAACGCAAAAATGGCAGAGGACGATCAACGACTTGCCTCTATTCAAAACGAATATCTCAACTTCCTTGATGACGAGGAAGACCAGGGTACATACACGGCCCACGTACGAAAAATGATCAACGATAAGAGTAAACGGTTGGTTGTAAATATTAACGACATCCGGCGGAAGAATCCAGGCCGTGCGTTGGCTCTGCTGAACAGCGCATTTGATGAGCAGCTGGCGTTTTCGCGAGCGTTGAAAGATTATGTTTCAACCATCGATATGAGCTACGCAAAGACGCAGGAAGACTTT ] [+] EMBL BM640081 [ ccgGGTCTGTGTGCTTGTACGTTTTACTTCGCTGTGCTCCGTGAATTAAGTGGTTGAAAAACTAACGCGCAACCGTTTTGCCTTCGATTGTTGTTTGTTTCCAATACGCAAACGTAAAACGCAAAAATGGCAGAGGACGATCAACGACTTGCCTCTATTCAAAACGAATATCTCAACTTCCTTGATGACGAGGAAGACCAGGGTACATACACGGCCCACGTACGAAAGATGATCAACGATAAGAGTAAACGGTTGGTTGTAAATATTAACGACATCCGGCGGAAGAATCCAGGCCGTGCGTTGGCTCTGCTGAACAGCGCATTTGATGAGCAGCTGGCGTTTTCGCGAGCGTTGAAAGATTATGTTTCAACCATCGATATGAGCTACGCAAAGACGCAGGAAGACTTTCACGTAGCGTTCGAGGGAAGCTTTGGCAACAAGCATGTAACTCCACGCTCGTTGACATCGCGCTTTCTGGGTAATCTCGTGTGCGTCGAGGGTATCGTGACGAAGGTATCGCTTATCCGACCCAAAGTGGTCAAGAGTGTGCACTATTGTCCGGCGACGAAGAAGGTGATGGAACGCCGGTACACGGATCTCACTTCGTTTGAAGCCGTGCCGTCCAGTGCCGTCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5457#0 ----------------------------------------------CCGCCCACGCGTCC 14 consensus_5457#2 GTTGAAATTGTTGCCACGCCAGTCGGTCTGTGTGCTTGTACGTTTTACTTCGCTGTGCTC 60 consensus_5457#1 ------------------------------------------------------------ consensus_5457#0 GGTGAATTAAGTGGTTGAAAAACTAACGCGCAACCGTTTTGCCTTCGATTGTTGTTTGTT 74 consensus_5457#2 CGTGAATTAAGTGGGTGAAAAACTAACGCGCAACCGTTTTGCCTTCGATTGTTGTTTGTT 120 consensus_5457#1 ------------------------------------------------------------ consensus_5457#0 TCCAATACGCAAACGTAAAACGCAAAAATGGCAGAGGACGATCAACGACTTGCCTCTATT 134 consensus_5457#2 TCCAATACGCAAACGTAAAACGCAAAAATGGCAGAGGACGATCAACGACTTGCCTCTATT 180 consensus_5457#1 ------------------------------------------------------------ consensus_5457#0 CAAAACGAATATCTCAACTTCCTTGATGACGAGGAAGACCAGGGTACATACACGGCCCAC 194 consensus_5457#2 CAAAACGAATATCTCAACTTCCTTGATGACGAGGAAGACCAGGGTACATACACGGCCCAC 240 consensus_5457#1 ----------------------------------------------------CCGCGGAC 8 * ** ** consensus_5457#0 GTACGAAAAATGATCAACGATAAGAGTAAACGGTTGGTTGTAAATATTAACGACATCCGG 254 consensus_5457#2 GTACGAAAAATGATCAACGATAAGAGTAAACGGTTGGTTGTAAATATTAACGACATCCGG 300 consensus_5457#1 GCGTGGGCGG-ACGCGTGGGTAAGAGTAAACGGTTGGTTGTAAATATTAACGACATCCGG 67 * * * * **************************************** consensus_5457#0 CGGAAGAATCCAGGCCGTGCGTTGGCTCTGCTGAACAGCGCATTTGATGAGCAGCTGGCG 314 consensus_5457#2 CGGAAGAATCCAGGCCGTGCGTTGGCTCTGCTGAACAGCGCATTTGATGAGCAGCTGGCG 360 consensus_5457#1 CGGAAGAATCCAGGCCGTGCGTTGGCTCTGCTGAACAGCGCATTTGATGAGCAGCTGGCG 127 ************************************************************ consensus_5457#0 TTTTCGCGAGCGTTGAAAGATTATGTTTCAACCATCGATATGAGCTACGCAAAGACGCAG 374 consensus_5457#2 TTTTCGCGAGCGTTGAAAGATTATGTTTCAACCATCGATATGAGCTACGCAAAGACGCAG 420 consensus_5457#1 TTTTCGCGAGCGTTGAAAGATTATGTTTCAACCATCGATATGAGCTACGCAAAGACGCAG 187 ************************************************************ consensus_5457#0 GAAGACTTTCACGTAGCGTTCGAGGGAAGCTTTGGCAACAAGCATGTAACTCCACGCTCG 434 consensus_5457#2 GAAGACTTTCACGTAGCGTTCGAGGGAAGCTTTGGCAACAAGCATGTAACTCCACGCTCG 480 consensus_5457#1 GAAGACTTTCACGTAGCGTTCGAGGGAAGCTTTGGCAACAAGCATGTAACTCCACGCTCG 247 ************************************************************ consensus_5457#0 TTGACATCGCGCTTTCTGGGTAATCTCGTGTGCGTCGAGGGTATCGTGACGAAGGTATCG 494 consensus_5457#2 TTGACATCGCGCTTTCTGGGTAATCTCGTGTGCGTCGAGGGTATCGTGACGAAGGTATCG 540 consensus_5457#1 TTGACATCGCGCTTTCTGGGTAATCTCGTGTGCGTCGAGGGTATCGTGACGAAGGTATCG 307 ************************************************************ consensus_5457#0 CTTATCCGACCCAAAGTGGTCAAGAGTGTGCACTATTGTCCGGCGACGAAGAAGGTGATG 554 consensus_5457#2 CTTATCCGACCCAAAGTGGTCAAGAGTGTGCACTATTGTCCGGCGACGAAGAAGGTGATG 600 consensus_5457#1 CTTATCCGACCCAAAGTGGTCAAGAGTGTGCACTATTGTCCGGCGACGAAGAAGGTGATG 367 ************************************************************ consensus_5457#0 GAACGCCGGTACACGGATCTCACTTCGTTTGAAGCCGTGCCGTCCAGTGCCGTCTACCCG 614 consensus_5457#2 GAACGCCGGTACACGGATCTCACTTCGTTTGAAGCCGTGCCGTCCAGTGCCGTCT----- 655 consensus_5457#1 GAACGCCGGTACACGGATCTCACTTCGTTTGAAGCCGTGCCGTCCAGTGCCGTCTACCCG 427 ******************************************************* consensus_5457#0 ACTAAGG-ATGACGATGGCAACCTGCTGGAGACGGAGTTTGG-CCTGTCGGTGTACAAAG 672 consensus_5457#2 ------------------------------------------------------------ consensus_5457#1 ACTAAGGGATGACGATGGCAACCTGCTGGAGACGGAGTTTGGGCCTGTCGGTGTACAAAG 487 consensus_5457#0 ACCATCAAACGCTTA--------------------------------------------- 687 consensus_5457#2 ------------------------------------------------------------ consensus_5457#1 ACCATCAAACGCTTAGCATTCAGGAAATGCCAGAGAAAGCCCCCGCGGGTCAGCTGCCCC 547 consensus_5457#0 ------------------------------------------------------------ consensus_5457#2 ------------------------------------------------------------ consensus_5457#1 GTTTCGGGGGGACGTTGTGTGCGACGATGATCTAGTTGATCGTTGCAAACCGGGCGATCG 607 consensus_5457#0 ------------------------------------------------------------ consensus_5457#2 ------------------------------------------------------------ consensus_5457#1 TGTACAGATCGTGGGTTAACTACCGTTGTCTGCCCGGAAAAGCAGGGTGGATACACAACG 667 consensus_5457#0 - consensus_5457#2 - consensus_5457#1 G 668 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||