These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5461#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 811 fasta sequence [CCGGCTGCGCAAGCTTCAGCACGAGAACGAGACGATCACTTTATCGTGTGTTTTGTTGTTGTTGTTGTTGTTATGTTCTACATACCACTGGAACACGTTGTAACGAGTCATAACGCGTTCCCGGTTGCGGCTAGCGAAGCTCTTGTGAGTAGCACGGATTTTTAAGTGTTGATCTCACCGATTAATCAGACATCCATCAACCTGTGGCAAGAACAAATTTACAATCAGAAAAGAAATAGTTGCTGTTTCACTTGCTACTAGACATTGCGTCCTAGAGAACTCTGTTTGCACGTTGATTATTGTCGTTCGGTCGGAACCAGCGGCCCGAGCGACTACACCAAGGTTCCTACTCAGCACTCCCACACACACACAACCCCAGACGAGTTAGCGGGCGGGACAGTATGGTTCGTGTGACGCTGCACGCCCGGAGCTGCTGCCTGCTGGTGGCACTGCTGCTGCTCCTCCTCCTGCTCGTCGACGATGGGGCTGGGCAGATACCGCGACGACGGCCCCGCAACGACCGCTGCCCGAAGGTCCGGGCGATGCGCAACTTCGGGCTGAACGCGATGATGGGCTCCTGGTACGTGATACAGTACTTCGCCTCGACCGAGATGTTCCCGGGAGTACGGGTGTATGCGCAGCTCGTTCGTCACCTCCGATGGGTACGTGACGATGAACTTTACGTACGTGTTTTTGGACGACCCGCTCGCCACCTTCCAGCAGGGCAACATTACCTGGATCATACCGAACTACGGCCAGCCGGCGCACTGGGTGCACGCAGAGAGTAGCTATGAAGAGATCTACAACACCT] [+] EMBL BM626561 [CCGGCTGCGCAAGCTTCAGCACGAGAACGAGACGATCACTTTATCGTGTGTTTTGTTGTTGTTGTTGTTGTTATGTTCTACATACCACTGGAACACGTTGTAACGAGTCATAACGCGTTCAGTGTTGCGGCTAGCGAAGCTCTTGTGAGTAGCACGGATTTTTAAGTGTTGATCTCACCGATTAATCAGACATCCATCAACCTGTGGCAAGAACAAATTTACAATCAGAAAAGAAATAGTTGCTGTTTCACTTGCTACTAGACATTGCGTCCTAGAGAACTCTGTTTGCACGTTGATTATTGTCGTTCGGTCGGAACCAGTGGCCCGAGCGACTACACCCAGGTTCCTACTCAGCACTCCCACACACACACAACCCCAGACGAGTTAGCGGGCGGGACAGTATGGTTCGTGTGACGCTGCACGCCCGGAGCTGCTGCCTGCTGGTGGCACTGCTGCTGCTCCTCCTCCTGCTCGTCGACGATGGGGCTGGGCAGATACCGCGACGACGGCCCCGCAACGACCGCTGCCCGAAGGTCCGGGCGATGCGCAACTTCGGGCTGAACGCGATGATGGGCTCCTGGTACGTGATACAGTACTTCGCCTCGACCGAGATGTTCCCGGGAGTACGGGTGTATGCGCAGCTCGTTCGTCACCTCC ] [+] EMBL BM575732 [ CCGGTTGCGGCTAGCGAAGCTCTTGTGAGTAGCACGGATTTTTAAGTGTTGATCTCACCGATTAATCAGACATCCATCAACCTGTGGCAAGAACAAATTTACAATCAGAAAAGAAATAGTTGCTGTTTCACTTGCTACTAGACATTGCGTCCTAGAGAACTCTGTTTGCACGTTGATTATTGTCGTTCGGTCGGAACCAGCGGCCCGAGCGACTACACCAAGGTTCCTACTCAGCACTCCCACACACACACAACCCCAGACGAGTTAGCGGGCGGGACAGTATGGTTCGTGTGACGCTGCACGCCCGGAGCTGCTGCCTGCTGGTGGCACTGCTGCTGCTCCTCCTCCTGCTCGTCGACGATGGGGCTGGGCAGATACCGCGACGACGGCCCCGCAACGACCGCTGCCCGAAGGTCCGGGCGATGCGTAACTTCGGGCTGAACGCGATGATGGGCTCCTGGTACGTGATACAGTACTTCGCCTCGACCGAGATGTTCCC GGAGTACGGGTGTATGCGCAGCTCGTTCGTCACCTCCGATGGGTACGTGACGATGAACTTTACGTACGTGTTTTTGGACGACCCGCTCGCCACCTTCCAGCAGGGCAACATTACCTGGATCATACCGAACTACGGCCAGCCGGCGCACTGGGTGCACGCAGAGAGTAGCTATGAAGAGATCTACAACACCT] [+] EMBL BM612170 [ CCGGTTGCGGCTAGCGAAGCTCTTGTGAGTAGCACGGATTTTTAAGTGTTGATCTCACCGATTAATCAGACATCCATCAACCTGTGGCAAGAACAAATTTACAATCAGAAAAGAAATAGTTGCTGTTTCACTTGCTACTAGACATTGCGTCCTAGAGAACTCTGTTTGCACGTTGATTATTGTCGTTCGGTCGGAACCAGCGGCCCGAGCGACTACACCAAGGTTCCTACTCAGCACTCCCACACACACACAACCCCAGACGA ] consensusID : consensus_5461#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 436 fasta sequence [TTGGGCTTTTGGATTTCACAATGAAAGGAGGAGAGTTGCGCACATGGTGGGTTGCTTTGGGGCACCGCATCGATTGTGGAGCTGCGCGCCGCACGATCTGCAATTAGATTAGTAATTGAATACTTTTGGCTGACGCAAATCGGCCCAAGATTGTTACATCTACTTGCATCTACTTGCAGCGGAACCAGTGGCCCGAGCGACTACACCCAGGTTCCTACTCAGCACTCCCACACACACACAACCCCAGACGAGTTAGCGGGCGGGACAGTATGGTTCGTGTGACGCTGCACGCCCGGAGCTGCTGCCTGCTGGTGGCACTGCTGCTGCTCCTCCTCCTGCTCGTCGACGATGGGGCTGGGCAGATACCGCGACGACGGCCCCGCAACGACCGCTGCCCGAAGGTGGTTGGCCCCAAGGGCCTGTGTACTGGCATCGT] [-] EMBL BX611587 [TTGGGCTTTTGGATTTCACAATGAAAGGAGGAGAGTTGCGCACATGGTGGGTTGCTTTGGGGCACCGCATCGATTGTGGAGCTGCGCGCCGCACGATCTGCAATTAGATTAGTAATTGAATACTTTTGGCTGACGCAAATCGGCCCAAGATTGTTACATCTACTTGCATCTACTTGCAGCGGAACCAGTGGCCCGAGCGACTACACCCAGGTTCCTACTCAGCACTCCCACACACACACAACCCCAGACGAGTTAGCGGGCGGGACAGTATGGTTCGTGTGACGCTGCACGCCCGGAGCTGCTGCCTGCTGGTGGCACTGCTGCTGCTCCTCCTCCTGCTCGTCGACGATGGGGCTGGGCAGATACCGCGACGACGGCCCCGCAACGACCGCTGCCCGAAGGTGGTTGGCCCCAAGGGCCTGTGTACTGGCATCGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5461#0 CCGGCTGCGCAAGCTTCAGCACGAGAACGAGACGATCACTTTATCGTGTGTTTTGTTGTT 60 consensus_5461#1 ------------------------------------------------------------ consensus_5461#0 GTTGTTGTTGTTATGTTCTACATACCACTGGAACACGTTGTAACGAGTCATAACGCGTTC 120 consensus_5461#1 ----------------------------------------------------TTGGGCTT 8 * * * consensus_5461#0 CCGGTTGCGGCTAGCGAAGCTCTTGTGAGTAGCACGGATTTTTAAGTGTTGATCTCACCG 180 consensus_5461#1 TTGGATTTCACAATGAAAGGAG--GAGAGTTGCGCACATGGTGGGTTGCT--TTGGGGCA 64 ** * * * *** * **** ** * ** * ** * * * consensus_5461#0 ATTAATCAGACATCCATCAACCTGTGGCAAGAACAAATTTACAATCAGAAAAGAAATAGT 240 consensus_5461#1 CCGCATCGATTGTGGAGCTGCGCGCCGCACGA-----TCTGCAATTAGATTAGTAATTG- 118 *** * * * * * *** ** * * **** *** ** *** * consensus_5461#0 TGCTGTTTCACTTGCTACTAGACATTGCGTCCTAGAGAACTCTGTTTGCACGTTGATTAT 300 consensus_5461#1 -AATACTT--TTGGCTGACGCAAATCG-GCCCAAGATTGTTACATCTACTTGCATCTACT 174 * ** * *** * ** * * ** *** * * * * * * * consensus_5461#0 TGTCGTTCGGTCGGAACCAGCGGCCCGAGCGACTACACCAAGGTTCCTACTCAGCACTCC 360 consensus_5461#1 TGCAG------CGGAACCAGTGGCCCGAGCGACTACACCCAGGTTCCTACTCAGCACTCC 228 ** * ********* ****************** ******************** consensus_5461#0 CACACACACACAACCCCAGACGAGTTAGCGGGCGGGACAGTATGGTTCGTGTGACGCTGC 420 consensus_5461#1 CACACACACACAACCCCAGACGAGTTAGCGGGCGGGACAGTATGGTTCGTGTGACGCTGC 288 ************************************************************ consensus_5461#0 ACGCCCGGAGCTGCTGCCTGCTGGTGGCACTGCTGCTGCTCCTCCTCCTGCTCGTCGACG 480 consensus_5461#1 ACGCCCGGAGCTGCTGCCTGCTGGTGGCACTGCTGCTGCTCCTCCTCCTGCTCGTCGACG 348 ************************************************************ consensus_5461#0 ATGGGGCTGGGCAGATACCGCGACGACGGCCCCGCAACGACCGCTGCCCGAAGGTC-CGG 539 consensus_5461#1 ATGGGGCTGGGCAGATACCGCGACGACGGCCCCGCAACGACCGCTGCCCGAAGGTGGTTG 408 ******************************************************* * consensus_5461#0 GCGATGCGCAACTTCGGGCTGAACGCGATGATGGGCTCCTGGTACGTGATACAGTACTTC 599 consensus_5461#1 GCCCCAAGGGCCTGTGTACTGGCATCGT-------------------------------- 436 ** * ** * *** ** consensus_5461#0 GCCTCGACCGAGATGTTCCCGGGAGTACGGGTGTATGCGCAGCTCGTTCGTCACCTCCGA 659 consensus_5461#1 ------------------------------------------------------------ consensus_5461#0 TGGGTACGTGACGATGAACTTTACGTACGTGTTTTTGGACGACCCGCTCGCCACCTTCCA 719 consensus_5461#1 ------------------------------------------------------------ consensus_5461#0 GCAGGGCAACATTACCTGGATCATACCGAACTACGGCCAGCCGGCGCACTGGGTGCACGC 779 consensus_5461#1 ------------------------------------------------------------ consensus_5461#0 AGAGAGTAGCTATGAAGAGATCTACAACACCT 811 consensus_5461#1 -------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||