These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5471#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1132 fasta sequence [CCGCCCACGCGTCCGAACAAATCAAAACCATGGATACCAAAGCAGCATCAGCGGGACCCGCCCCGACGCATTTACCTTCGTCCACATATCCAGCGACGTCACCGTACTCGAAGGGTGCCCGGTCGTCGCACCAGTATTTTAGTCTAAGATGGAACAACTACCAGTCAAACATGACGTCCGTGTTCCACGAGCTGCTCGAGTCACAATCCTTCGTCGATGTTACGCTAGCCTGCGAATACAACTCACTAAAGGCGCACAAGGTGGTTCTGTCGGCGTGTTCGGCGTACTTTCAAAAAAATTCTCCTGGACAACCCGTGCAAGCATCCGACCATCATACTGCCGGCCGATATATGCTTTTCCGATCTGCAGTTCATCATCGAGTTCGTGTACCGCGGGGAAATCGATGTATCCGAGGCAGAGCTGCAGAGCTTGTTACGGACAGCGGAGCAGCTGAAAATTAAAGGCCTGTGCGAGGTAGGCGAACCACAGTACGAGCAGGACTACTCGCCCGCACTAAAGCGCTACAAACCGTACCGGGTCACGGTCGCCCCCGGACAACCGG-ATCCAGGCACCATCACCACCAGCAACCACCGCCCCCACCAACCACCCTCTGGGGCATCGGGATCGACCAGTGGTGGCCGATCCGGTTCGTCCGCAGCAGGAGCAGGAGGATCGCACGGCAGCGGTGGCAGCAGTGGCGGCAACAGCAGTAACAATAACAACAACAACAGTTCGTCTTCCTCCCAGTCGACGGGATACAGCGAGAACGGTAAAGGCTGCAGTACCGGCAAGGGCGGCAGTGGCGGAGGTAGCGGCGGTCTAGGATCTGGGGCAGGGCGCACCCTTTACCATCCCTCACAGCACCATCACCCGCTGCACCATCATCTGCATCATCATCCGCACCACCATCTGCATCATCTGCACCATCCCCCGCCACTCGGCGGTGACCCGCGGACGACGACCACCCCTGGCCATATTGTCGAGGACGACGATGATGGATCGGTGCTAGTGGTCGAAACGCACGATCTGACTACGACGGGATCGAAGGATAAGCATTATCAGCAGCAGCAGCAGCAGCAGCAGCAACACCATCAATCGCAACAAGCGCACCACCATCCTCACCCGCATCATC] [+] EMBL BM641921 [CCGCCCACGCGTCCGAACAAATCAAAACCATGGATACCAAAGCAGCATCAGCGGGACCCGCCCCGACGCATTTACCTTCGTCCACATATCCAGCGACGTCACCGTACTCGAAGGGTGCCCGGTCGTCGCACCAGTATTTTAGTCTAAGATGGAACAACTACCAGTCAAACATGACGTCCGTGTTCCACGAGCTGCTCGAGTCACAATCCTTCGTCGATGTTACGCTAGCCTGCGAATACAACTCACTAAAGGCGCACAAGGTGGTTCTGTCGGCGTGTTCGGCGTACTTTCAAAAAAATTCTCCTGGACAACCCGTGCAAGCATCCGACCATCATACTGCCGGCCGATATATGCTTTTCCGATCTGCAGTTCATCATCGAGTTCGTGTACCGCGGGGAAATCGATGTATCCGAGGCAGAGCTGCAGAGCTTGTTACGGACAGCGGAGCAGCTGAAAATTAAAGGCCTGTGCGAGGTAGGCGAACCACAGTACGAGCAGGACTACTCGCCCGCACTAAAGCGCTACAAACCGTACCGGGTCACGGTCGCCCCCGGACAACCGG ATCCAGGCACCATCACCACCAGCAACCACCGCCCCCACCAACCACCCTCTGGGGCATCGGGATCGACCAGTGGTGGCCGATCCGGTTCGTCCGCAGCAGGAGCAGGAGGATCGCACGGCAGCGGTGGCAG ] [+] EMBL BM620403 [ ccgATCGATGTATCCGAGGCAGAGCTGCAGAGCTTGTTACGGACAGCGGAGCAGCTGAAAATTAAAGGCCTGTGCGAGGTAGGCGAACCACAGTACGAGCAGGACTACTCGCCCGCACTAAAGCGCTACAAACCGTACC GGTCACGGTCGCCCCCGGACAACCGGCAT CA GCACCATCACCACCAGCAACCACCGCCCCCACC ACCACCCTCTGGTGCATCGGGATCGACCAGTGGTGGCCGATCCGGTTCGTCCGCAGCAGGAGCAGGAGGATCACACGGCAGCGGTGGCAGCAGTGGCGGCAACAGCAGTAACAATAACAACAACAACAGTTCGTCTTCCTCCCAGTCGACGGGATACAGCGAGAACGGTAAAGGCTGCAGTACCGGCAAGGGCGGCAGTGGCGGAGGTAGCGGCGGTCTAGGATCTGGGGCAGGGCGCACCCTTTACCATCCCTCACAGCACCATCACCCGCTGCACCATCATCTGCATCATCATCCGCACCACCATCTGCATCATCTGCACCATCCCCCGCCACTCGGCGGTGACCCGCGGACGACGACCACCCCTGGCCATATTGTCGAGGACGACGATGATGGATCGGTGCTAGTGGTCGAAACGCACGATCTGACTACGACGGGATCGAAGGATAAGCATTATCAGCAGCAGCAGCAGCAGCAGCAGCAACACCATCAATCGCAACAAGCGCACCACCATCCTCACCCGCATCATC] consensusID : consensus_5471#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 642 fasta sequence [CCGCAAATACGTAGTCAAACCAAAAAAAAACACAAAACAAAAAAACAAAACTATACATACAAAGTAAAGAAATAGTCAGTCTGTAAGACACTTTTTAGCGAAATTGCATAGCAAACCTAGAAAAAGAAGAGGTGCAAGGAAAAAAAGAAACATTGAAGCATACAAAAAGGCAAACCATTTGCAACTGACACCAAAAAACAAAACAAATCAAGGGACGGTGCAAACGAGCAAACGTTGCAAAGCCAAACCAAAAGCAGAAAAGGCAGAAAAAAGCTAATAACAAAGTAACAAATCAAAACCATGGATACCAAAGCAGCATCAGCGGGACCCGCCCCGACGCATTTACCTTCGTCCACATATCCAGCGACGTCACCGTACTCGAAGGGTGCCCGGTCGTCGCACCAGTATTTTAGTCTAAGATGGAACAACTACCAGTCAAACATGACGTCCGTGTTCCACGAGCTGCTCGAGTCACAATCCTTCGTCGATGTTACGCTAGCCTGCGAATACAACTCACTAAAGGCGCACAAGGTGGTTCTGTCGGCGTGTTCGGCGTACTTTCAAAAAATTCTCCTGGACAACCCGTGCAAGCATCCGACCATCATACTGCCGGCCGATATATGCTTTTCCGATCTGCAGTTC] [+] EMBL BM576670 [CCGCAAATACGTAGTCAAACCAAAAAAAAACACAAAACAAAAAAACAAAACTATACATACAAAGTAAAGAAATAGTCAGTCTGTAAGACACTTTTTAGCGAAATTGCATAGCAAACCTAGAAAAAGAAGAGGTGCAAGGAAAAAAAGAAACATTGAAGCATACAAAAAGGCAAACCATTTGCAACTGACACCAAAAAACAAAACAAATCAAGGGACGGTGCAAACGAGCAAACGTTGCAAAGCCAAACCAAAAGCAGAAAAGGCAGAAAAAAGCTAATAACAAAGTAACAAATCAAAACCATGGATACCAAAGCAGCATCAGCGGGACCCGCCCCGACGCATTTACCTTCGTCCACATATCCAGCGACGTCACCGTACTCGAAGGGTGCCCGGTCGTCGCACCAGTATTTTAGTCTAAGATGGAACAACTACCAGTCAAACATGACGTCCGTGTTCCACGAGCTGCTCGAGTCACAATCCTTCGTCGATGTTACGCTAGCCTGCGAATACAACTCACTAAAGGCGCACAAGGTGGTTCTGTCGGCGTGTTCGGCGTACTTTCAAAAAATTCTCCTGGACAACCCGTGCAAGCATCCGACCATCATACTGCCGGCCGATATATGCTTTTCCGATCTGCAGTTC] consensusID : consensus_5471#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 634 fasta sequence [CCGGCGCGCGGTCGGATTCTGTTTGGTCCCGGGCTCGATTCTCTCGTGCGTGTATGTGTGCATAGTGGCAGGCTCGCGGGCGCGTGTATGTGTCTTGTGTGTGCGTGTGTGTATGTGTGTGTGTCACTGCAGGTGGTGTGTGCACTGTCCTGCCGGTTTCCTTGCCGAGACCGTAGCAAAAGAAAAAGGAAAGAAAACATAATTTAAAGCAATCGACAGGAGCGAGCAGCAACCGAATTAGCCAAGACGGACGCGCCCGCGCACTCTCCTCGCCCTGCCAATTGGTCCTGTTTCTCTGTACCGTAATTTTTGCCGTGATGAGTGTCCTGTTGTGAGTGTTCAGCGTAGGGGCCAGCTTTATCCGGTACGTCGGTGCGCCTTGGCTGCACTTTTTTATTTTTTTAATTGGATCAACGCGAGTGTGTCCCCTCGTGTGTGCCTGCGCCGCTTGATTGAGTGTGGTGCCGGGTTTCTTCGGTGAAGCAGCCTGAAAGAGAGAGCTGCAGCTCTGCGGCAGTAAGCGCGATCCTGGGCGCACGGTCAGTGTTTCGCTCGTGCTATAGGAAGAGAGCTTGTTACGGACAGCGGAGCAGCTGAAAATTAAAGGCCTGTGCGAGGTAGGCGAACCACAGTA] [+] EMBL BM597730 [CCGGCGCGCGGTCGGATTCTGTTTGGTCCCGGGCTCGATTCTCTCGTGCGTGTATGTGTGCATAGTGGCAGGCTCGCGGGCGCGTGTATGTGTCTTGTGTGTGCGTGTGTGTATGTGTGTGTGTCACTGCAGGTGGTGTGTGCACTGTCCTGCCGGTTTCCTTGCCGAGACCGTAGCAAAAGAAAAAGGAAAGAAAACATAATTTAAAGCAATCGACAGGAGCGAGCAGCAACCGAATTAGCCAAGACGGACGCGCCCGCGCACTCTCCTCGCCCTGCCAATTGGTCCTGTTTCTCTGTACCGTAATTTTTGCCGTGATGAGTGTCCTGTTGTGAGTGTTCAGCGTAGGGGCCAGCTTTATCCGGTACGTCGGTGCGCCTTGGCTGCACTTTTTTATTTTTTTAATTGGATCAACGCGAGTGTGTCCCCTCGTGTGTGCCTGCGCCGCTTGATTGAGTGTGGTGCCGGGTTTCTTCGGTGAAGCAGCCTGAAAGAGAGAGCTGCAGCTCTGCGGCAGTAAGCGCGATCCTGGGCGCACGGTCAGTGTTTCGCTCGTGCTATAGGAAGAGAGCTTGTTACGGACAGCGGAGCAGCTGAAAATTAAAGGCCTGTGCGAGGTAGGCGAACCACAGTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5471#0 ------------------------------------------------------------ consensus_5471#1 CCGCAAATACGTAGTCAAACCAAAAAAAAACACAAAACAAAAAAACAAAACTATACATAC 60 consensus_5471#2 ------------------------------------------------------------ consensus_5471#0 ------------------------------------------------------------ consensus_5471#1 AAAGTAAAGAAATAGTCAGTCTGTAAGACACTTTTTAGCGAAATTGCATAGCAAACCTAG 120 consensus_5471#2 ------------------------------------------------------------ consensus_5471#0 ------------------------------------------------------------ consensus_5471#1 AAAAAGAAGAGGTGCAAGGAAAAAAAGAAACATTGAAGCATACAAAAAGGCAAACCATTT 180 consensus_5471#2 ------------------------------------------------------------ consensus_5471#0 ------------------------------------------------------------ consensus_5471#1 GCAACTGACACCAAAAAACAAAACAAATCAAGGGACGGTGCAAACGAGCAAACGTTGCAA 240 consensus_5471#2 ------------------------------------------------------------ consensus_5471#0 ------------------------------CCGCCCACG-CGTCCGAACAAATCAAAACC 29 consensus_5471#1 AGCCAAACCAAAAGCAGAAAAGGCAGAAAAAAGCTAATAACAAAGTAACAAATCAAAACC 300 consensus_5471#2 --------CCGGCGCGCGGTCGGATTCTGTTTGGTCCCG-GGCTCGATTCTCTCGTGCGT 51 * * ** consensus_5471#0 ATGGATAC-CAAAGCAGCATCAGCG-GGACCCGCCCCGACGCATT-TACCTTCGTCCACA 86 consensus_5471#1 ATGGATAC-CAAAGCAGCATCAGCG-GGACCCGCCCCGACGCATT-TACCTTCGTCCACA 357 consensus_5471#2 GTATGTGTGCATAGTGGCAGGCTCGCGGGCGCGTGTATGTGTCTTGTGTGTGCGTGTGTG 111 * * ** ** *** ** ** * ** * ** * * *** consensus_5471#0 TATCCAGCGACGTCACCGTACTCGAAGGGTGCCCGGTCGTCGCACCAGTATTTTAGTCTA 146 consensus_5471#1 TATCCAGCGACGTCACCGTACTCGAAGGGTGCCCGGTCGTCGCACCAGTATTTTAGTCTA 417 consensus_5471#2 TATGTGTGTGTGTCACTGCAGGTGGTGTGTGC---ACTGTCCTGCCGGTTTCCTTGCCGA 168 *** ***** * * * * **** *** ** ** * * * * * consensus_5471#0 AGATGGAACAACTACCAGTCAAACATGACGTCCGTGTTCCACGAGCTGCTCGAGTCACAA 206 consensus_5471#1 AGATGGAACAACTACCAGTCAAACATGACGTCCGTGTTCCACGAGCTGCTCGAGTCACAA 477 consensus_5471#2 GACCGTAGCAAAAGAAAAAGGAAAGAAAACATAATTTAAAGCAATCGACAGGAGCGAGCA 228 * * *** * ** * * * * * * * *** * * consensus_5471#0 TCCTTCGTCGATGTTACGCTAGCCTGCGAATACAACTCACTAAAGGCGCACAAGGTGGTT 266 consensus_5471#1 TCCTTCGTCGATGTTACGCTAGCCTGCGAATACAACTCACTAAAGGCGCACAAGGTGGTT 537 consensus_5471#2 GCAACCGAATTAGCCAAGACGGAC-GCGCCCGCGCACTCTCCTCGCCCTGCCAATTGGTC 287 * ** * * * * * *** * * * * * **** consensus_5471#0 CTGTCGGCGTGTTCGGCGTACTTT--CAAAAAAATTCTCCTGGACAACCCGTGCAAGCAT 324 consensus_5471#1 CTGTCGGCGTGTTCGGCGTACTTT--CAAAAAA-TTCTCCTGGACAACCCGTGCAAGCAT 594 consensus_5471#2 CTGTTTCTCTGTACCGTAATTTTTGCCGTGATGAGTGTCCTGTTGTGAGTGTTCAGCGTA 347 **** *** * * *** * * * ***** ** ** consensus_5471#0 CCGACCATCATACTGCCGGCCGATA-TATGCTTTTCCGATCTGCAGTTCATCATCGAGTT 383 consensus_5471#1 CCGACCATCATACTGCCGGCCGATA-TATGCTTTTCCGATCTGCAGTTC----------- 642 consensus_5471#2 GGGGCCAGCTTTATCCGGTACGTCGGTGCGCCTTGGCTGCACTTTTTTATTTTTTTAATT 407 * *** * * * * * ** * ** ** * ** consensus_5471#0 CGTGTACCGCGGGGAAATCGATGTATCCGAGGCAGAGCTGCAGAGCTTGTTACGGACAGC 443 consensus_5471#1 ------------------------------------------------------------ consensus_5471#2 GGATCAACGCGAGTGTGTCCCCTCGTGTGTGCCTGCGCCGCTTGATTGAGTGTGG--TGC 465 consensus_5471#0 GGAGCAGCTGAAAATTAAAGGCCTGTGCGAGGTAGGCGAACCACAGTACGAGCAGGACTA 503 consensus_5471#1 ------------------------------------------------------------ consensus_5471#2 CGGGTTTCTTCGGTGAAGCAGCCTGAAAGAGAGAGCTGCAGCTCTGCGGCAGTAA----- 520 consensus_5471#0 CTCGCCCGCACTAAAGCGCTACAAACCGTACCGGGTCACGGTCGCCCCCGGACAACCGGA 563 consensus_5471#1 ------------------------------------------------------------ consensus_5471#2 ---GCGCGATCCTGGGCGC-ACGGTCAGTGTTTCGCTCGTGCTATAGGAAGAGAGCTTGT 576 consensus_5471#0 TCCAGGCACCATCACCACCAGCAACCACCGCCCCCACCAACCACCCTCTGGGGCATCGGG 623 consensus_5471#1 ------------------------------------------------------------ consensus_5471#2 TACGGACAGCGGAGCAGCTGAAAATTAAAGGCCTGTGCGAGGTAGGCGAACCACAGTA-- 634 consensus_5471#0 ATCGACCAGTGGTGGCCGATCCGGTTCGTCCGCAGCAGGAGCAGGAGGATCGCACGGCAG 683 consensus_5471#1 ------------------------------------------------------------ consensus_5471#2 ------------------------------------------------------------ consensus_5471#0 CGGTGGCAGCAGTGGCGGCAACAGCAGTAACAATAACAACAACAACAGTTCGTCTTCCTC 743 consensus_5471#1 ------------------------------------------------------------ consensus_5471#2 ------------------------------------------------------------ consensus_5471#0 CCAGTCGACGGGATACAGCGAGAACGGTAAAGGCTGCAGTACCGGCAAGGGCGGCAGTGG 803 consensus_5471#1 ------------------------------------------------------------ consensus_5471#2 ------------------------------------------------------------ consensus_5471#0 CGGAGGTAGCGGCGGTCTAGGATCTGGGGCAGGGCGCACCCTTTACCATCCCTCACAGCA 863 consensus_5471#1 ------------------------------------------------------------ consensus_5471#2 ------------------------------------------------------------ consensus_5471#0 CCATCACCCGCTGCACCATCATCTGCATCATCATCCGCACCACCATCTGCATCATCTGCA 923 consensus_5471#1 ------------------------------------------------------------ consensus_5471#2 ------------------------------------------------------------ consensus_5471#0 CCATCCCCCGCCACTCGGCGGTGACCCGCGGACGACGACCACCCCTGGCCATATTGTCGA 983 consensus_5471#1 ------------------------------------------------------------ consensus_5471#2 ------------------------------------------------------------ consensus_5471#0 GGACGACGATGATGGATCGGTGCTAGTGGTCGAAACGCACGATCTGACTACGACGGGATC 1043 consensus_5471#1 ------------------------------------------------------------ consensus_5471#2 ------------------------------------------------------------ consensus_5471#0 GAAGGATAAGCATTATCAGCAGCAGCAGCAGCAGCAGCAGCAACACCATCAATCGCAACA 1103 consensus_5471#1 ------------------------------------------------------------ consensus_5471#2 ------------------------------------------------------------ consensus_5471#0 AGCGCACCACCATCCTCACCCGCATCATC 1132 consensus_5471#1 ----------------------------- consensus_5471#2 ----------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||