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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5476#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1409 fasta sequence
[TTTAAAGCGATTTAATAAATGTTTTATTAGTTTCTTTGTTCGTTTTTTTAAATTGTTCGTAAATTGCTACACGTAGGTTCAGGTCCGATTGGTAAAAATATTTGTTCGGTAAGCTTTTTTGTTTTAATTAAAATTACTTAACAAAACGTTCGACGTCCCAAATCGGGTCATATGTGCAAAAGAGAATGCACAACTCGATTTTCTAGCAGGCTGTTTTGTGTCACTTCTACTTAAAAGTGCATTAAAGTTTAAGCGTAATGGGTGGTGGTGGTTTGTTGGTTGGTTGGTGTTGTTAATTGAGTAAAAGAAAGCGGACAAGCGCTCTCAA-GGCAATGCACGCGGCGCGAAGAGAGTATTGGGATGCGTGGTCGTGCGCCGATGGTAGGAGCGTTAGTCCTTCTTTGGTTTTTTGTAGTACCACGCGGCCAGCAACACCGAGCTGCTGAGCACGGTCGAGATGCCAAAGTTGGCGAGCAGCATTTTATCGCCCGAATCCAGCATAATCGTGTAGATGCGAGTAGAGTTCGTGAACGCCGATATGCCCCACGTGATCAGGCTGACCGACTGGGAGTCCTTCGAGCGGAGGATGGCAATCAGCTGCATTACCTTGCTCGTCGCCCCGACCGGTGTGGTAAATGGCACTAGCATCATGAGCAGCGAGGAAGGTATGATGGCGGTA-CGAA-CCAACAAACACCGCCACATAGACTGCAGCCCACTGGTAGGCGCGCTTGCCGAGCAGCGACTCATACTGCAGCACGTAGTAGATGAGCACGTACTCCTGCACCAGCAGTATCGGGTACTCCAGGTAGGAAAGGAAGGCGTACCCGTTCGTGTAGTTGTACAGCATCGTGACGGTGTAGCTGCACAGCTCCATTAGCAGCCCATTAACGCTCAGCCCCTTGGCCGATTGCAGCTGGCGGACGGTTTGTATCTGCGGCACCTTCGACACCAGGCAGGACGCGATGGTGACGATCGACAGCACGTCCGCTATCACATACAGGATGCCACTCTCGTCCAGCAGGCCCATTTTGGTCGTCAATTATGTCGATCGGTTCAAAGACGCTCAGTAAGGTAGGCTGACACGCTGCTAATGCGCCTCACACCGATGCCATCGTTTGCGCTACCGAGCGAGGAGGTTCGAAAATTCAGCTATTATTATGGGGTGTAGTAGCACACCTTGATGATTGGTACTAATTTTGTCCGGGGCGATGAATTTAAATTTCCCGGTCGGACGCGGAAAGCGCACCGGAACACTGCCTGCCGCAACACAACTGCTGCTTTGCGCCACCGTTCGGGCGTATACGTATACGCACGACGCGTTCGCGGGTTGACACGCGTAATTATTGACTGGTCGACATTTTTAGCGATAAGCCAAACGAGTGACGACGCTAACTGAGAGAAGAAGAGGA]
[+] EMBL CNS096DC [TTTAAAGCGATTTAATAAATGTTTTATTAGTTTCTTTGTTCGTTTTTTTAAATTGTTCGTAAATTGCTACACGTAGGTTCAGGTCCGATTGGTAAAAATATTTGTTCGGTAAGCTTTTTTGTTTTAATTAAAATTACTTAACAAAACGTTCGACGTCCCAAATCGGGTCATATGTGCAAAAGAGAATGCACAACTCGATTTTCTAGCAGGCTGTTTTGTGTCACTTCTACTTAAAAGTGCATTAAAGTTTAAGCGTAATGGGTGGTGGTGGTTTGTTGGTTGGTTGGTGTTGTTAATTGAGTAAAAGAAAGCGGACAAGCGCTCTCAA GGCAATGCACGCGGCGCGAAGAGAGTATTGGGATGCGTGGTCGTGCGCCGATGGTAGGAGCGTTAGTCCTTCTTTGGTTTTTTGTAGTACCACGCGGCCAGCAACACCGAGCTGCTGAGCACGGTCGAGATGCCAAAGTTGGCGAGCAGCATTTTATCGCCCGAATCCAGCATAATCGTGTAGATGCGAGTAGAGTTCGTGAACGCCGATATGCCCCACGTGATCAGGCTGACCGACTGGGAGTCCTTCGAGCGGAGGATGGCAATCAGCTGCATTACCTTGCTCGTCGCCCCGACCGGTGTGGTAAATGGCACTAGCATCATGAGCAGCGAGGAAGGTATGATGGCGGTA CGAA CCAACAAACACCGCCACATAGACTGCAGCCCACTGGTAGGCGCGCTTGCCGAGCAGCGACTCATACTGCAGCACGTAGTAGATGAGCACGTACTCCTGCACCAGCAGTATCGGGTACTCCAGGTAGGAAAGGAAGGCGTACCCGTTCGTGTAGTTGTACAGCATCGTGACGGTGTAGCTGCACAGCTCCATTAGCAGCCCATTAACGCTCAGCCCCTTGGCCGATTGCAGCTGGCGGACGGTTTGTATCTGCGGCACCTTCGACACCAGGCAGGACGCGATGGTGACGATCGACAGCACGTCCGCTATCACATAC ]
[-] EMBL CNS096DB [ GAAAGCGGACAAGCGCTCTCAAGGGCAATGCACGCGGCGCGAAGAGAGTATTGGGATGCGTGGTCGTGCGCCGATGGTAGGAGCGTTAGTCCTTCTTTGGTTTTTTGTAGTACCACGCGGCCAGCAACACCGAGCTGCTGAGCACGGTCGAGATGCCAAAGTTGGCGAGCAGCATTTTATCGCCCGAATCCAGCATAATCGTGTAGATGCGAGTTGAGTTCGTGAACGCCGATATGCCCCACGTGATCAGGCTGACCGACTGGGAGTCCTTCGAGCGGAGGATGGCAATCAGCTGCATTACCTTGCTCGTCGCCCCGACCGGTGTGGTAAATGGCACTAGCATCATGAGCAGCGAGGAAGGTATGATGGCGGTAGCGAAGCCAACAAACACCGCCACATAGACTGCAGCCCACTGGTAGGCGCGCTTGCCGAGCAGCGACTCATACTGCAGCACGTAGTAGATGAGCACGTACTCCTGCACCAGCAGTATCGGGTACTCCAGGTAGGAAAGGAAGGCGTACCCGTTCGTGTAGTTGTACAGCATCGTGACGGTGTAGCTGCACAGCTCCATTAGCAGCCCATTAACGCTCAGCCCCTTGGCCGATTGCAGCTGGCGGACGGTTTGTATCTGCGGCACCTTCGACACCAGGCAGGACGCGATGGTGACGATCGACAGCACGTCCGCTATCACATACAGGATGCCACTCTCGTCCAGCAGGCCCATTTTGGTCGTCAATTATGTCGATCGGTTCAAAGACGCTCAGTAAGGTAGGCTGACACGCTGCTAATGCGCCTCACACCGATGCCATCGTTTGCGCTACCGAGCGAGGAGGTTCGAAAATTCAGCTATTATTATGGGGTGTAGTAGCACACCTTGATGATTGGTACTAATTTTGTCCGGGGCGATGAATTTAAATTTCCCGGTCGGACGCGGAAAGCGCACCGGAACACTGCCTGCCGCAACACAACTGCT ]
[-] EMBL BM619940 [ GCGATGATTTTAAATCTCCCGGTCGGACGCGGAAAGCGCACCGGAACACTGCCTGCCGCCACACAACTGCTGCTTTGCGCCACCGTTCGGGCGTATACGTATACGCACGACGCGTTCGCGGGTTGACACGCGTAATTATTGACTGGTCGACATTTTTAGCGATAAGCCAAACGAGTGACGACGCTAACTGAGAGAAGAAGAGGA]
consensusID : consensus_5476#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 730 fasta sequence
[CCTTCGAGCGGGAGGATGGCGATCAGCTGCATTACCTTGCTCGTCGCCCCAACCCGGTGTGGTAAATGGCACCAGCATCATGAGCAGCGAGGAAGGTATGATGGTGGTAGCGAAGCCAACAAACACCGCCACATAGACTGCAGCCCACTGGTAGGCGCGCTTGCCGAGCAGCGACTCATACTGCAGCACGTAGTAGATGAGCACGTACTCCTGCACCAGCAGTATCGGGTACTCCAGGTAGGAAAGGAAGGCGTACCCGTTCGTGTAGTTGTACAGCATCGTGACGGTGTAGCTGCACAGCTCCATTAGCAGCCCATTAACGCTCAGCCCCTTGGCGGATTGCAGCTGGCGGACGGTTTGTATCTGCGGCACCTTCGACACCAGGCAGGACGCGATGGTGACGATCGACAGCACGTCCGCTATCACGTACAGGATGCCACTCTCGTCCAGCAGGCCCATTTCGGTCGTCAATTATGTCGATCGGTTCAAAGACGCTCAATCAGGTAGGCTGACACGCTGCTAATGCGCCTGCAGATGATGATGATTTGCACCGATGAAGTATCGTCGCGTAACTGGCTGTTTGCACACCTTCCTTTACCTCACACCGATGCCATCGTTTACGCTACCGAGCGAGGAGGTTCGAAAATTCAGCTATTATTATGGGGTGTAGTAGCACACCTTGATGATTGGTACTAATTTTGTCCGGGGCGATGATTTTAAATTTCCCCGG]
[-] EMBL BM576880 [CCTTCGAGCGGGAGGATGGCGATCAGCTGCATTACCTTGCTCGTCGCCCCAACCCGGTGTGGTAAATGGCACCAGCATCATGAGCAGCGAGGAAGGTATGATGGTGGTAGCGAAGCCAACAAACACCGCCACATAGACTGCAGCCCACTGGTAGGCGCGCTTGCCGAGCAGCGACTCATACTGCAGCACGTAGTAGATGAGCACGTACTCCTGCACCAGCAGTATCGGGTACTCCAGGTAGGAAAGGAAGGCGTACCCGTTCGTGTAGTTGTACAGCATCGTGACGGTGTAGCTGCACAGCTCCATTAGCAGCCCATTAACGCTCAGCCCCTTGGCGGATTGCAGCTGGCGGACGGTTTGTATCTGCGGCACCTTCGACACCAGGCAGGACGCGATGGTGACGATCGACAGCACGTCCGCTATCACGTACAGGATGCCACTCTCGTCCAGCAGGCCCATTTCGGTCGTCAATTATGTCGATCGGTTCAAAGACGCTCAATCAGGTAGGCTGACACGCTGCTAATGCGCCTGCAGATGATGATGATTTGCACCGATGAAGTATCGTCGCGTAACTGGCTGTTTGCACACCTTCCTTTACCTCACACCGATGCCATCGTTTACGCTACCGAGCGAGGAGGTTCGAAAATTCAGCTATTATTATGGGGTGTAGTAGCACACCTTGATGATTGGTACTAATTTTGTCCGGGGCGATGATTTTAAATTTCCCCGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5476#0 TTTAAAGCGATTTAATAAATGTTTTATTAGTTTCTTTGTTCGTTTTTTTAAATTGTTCGT 60
consensus_5476#1 ------------------------------------------------------------
consensus_5476#0 AAATTGCTACACGTAGGTTCAGGTCCGATTGGTAAAAATATTTGTTCGGTAAGCTTTTTT 120
consensus_5476#1 ------------------------------------------------------------
consensus_5476#0 GTTTTAATTAAAATTACTTAACAAAACGTTCGACGTCCCAAATCGGGTCATATGTGCAAA 180
consensus_5476#1 ------------------------------------------------------------
consensus_5476#0 AGAGAATGCACAACTCGATTTTCTAGCAGGCTGTTTTGTGTCACTTCTACTTAAAAGTGC 240
consensus_5476#1 ------------------------------------------------------------
consensus_5476#0 ATTAAAGTTTAAGCGTAATGGGTGGTGGTGGTTTGTTGGTTGGTTGGTGTTGTTAATTGA 300
consensus_5476#1 ------------------------------------------------------------
consensus_5476#0 GTAAAAGAAAGCGGACAAGCGCTCTCAAGGCAATGCACGCGGCGCGAAGAGAGTATTGGG 360
consensus_5476#1 ------------------------------------------------------------
consensus_5476#0 ATGCGTGGTCGTGCGCCGATGGTAGGAGCGTTAGTCCTTCTTTGGTTTTTTGTAGTACCA 420
consensus_5476#1 ------------------------------------------------------------
consensus_5476#0 CGCGGCCAGCAACACCGAGCTGCTGAGCACGGTCGAGATGCCAAAGTTGGCGAGCAGCAT 480
consensus_5476#1 ------------------------------------------------------------
consensus_5476#0 TTTATCGCCCGAATCCAGCATAATCGTGTAGATGCGAGTAGAGTTCGTGAACGCCGATAT 540
consensus_5476#1 ------------------------------------------------------------
consensus_5476#0 GCCCCACGTGATCAGGCTGACCGACTGGGAGTCCTTCGAGCGG-AGGATGGCAATCAGCT 599
consensus_5476#1 --------------------------------CCTTCGAGCGGGAGGATGGCGATCAGCT 28
*********** ******** *******
consensus_5476#0 GCATTACCTTGCTCGTCGCCCCGACC-GGTGTGGTAAATGGCACTAGCATCATGAGCAGC 658
consensus_5476#1 GCATTACCTTGCTCGTCGCCCCAACCCGGTGTGGTAAATGGCACCAGCATCATGAGCAGC 88
********************** *** ***************** ***************
consensus_5476#0 GAGGAAGGTATGATGGCGGTA-CGAA-CCAACAAACACCGCCACATAGACTGCAGCCCAC 716
consensus_5476#1 GAGGAAGGTATGATGGTGGTAGCGAAGCCAACAAACACCGCCACATAGACTGCAGCCCAC 148
**************** **** **** *********************************
consensus_5476#0 TGGTAGGCGCGCTTGCCGAGCAGCGACTCATACTGCAGCACGTAGTAGATGAGCACGTAC 776
consensus_5476#1 TGGTAGGCGCGCTTGCCGAGCAGCGACTCATACTGCAGCACGTAGTAGATGAGCACGTAC 208
************************************************************
consensus_5476#0 TCCTGCACCAGCAGTATCGGGTACTCCAGGTAGGAAAGGAAGGCGTACCCGTTCGTGTAG 836
consensus_5476#1 TCCTGCACCAGCAGTATCGGGTACTCCAGGTAGGAAAGGAAGGCGTACCCGTTCGTGTAG 268
************************************************************
consensus_5476#0 TTGTACAGCATCGTGACGGTGTAGCTGCACAGCTCCATTAGCAGCCCATTAACGCTCAGC 896
consensus_5476#1 TTGTACAGCATCGTGACGGTGTAGCTGCACAGCTCCATTAGCAGCCCATTAACGCTCAGC 328
************************************************************
consensus_5476#0 CCCTTGGCCGATTGCAGCTGGCGGACGGTTTGTATCTGCGGCACCTTCGACACCAGGCAG 956
consensus_5476#1 CCCTTGGCGGATTGCAGCTGGCGGACGGTTTGTATCTGCGGCACCTTCGACACCAGGCAG 388
******** ***************************************************
consensus_5476#0 GACGCGATGGTGACGATCGACAGCACGTCCGCTATCACATACAGGATGCCACTCTCGTCC 1016
consensus_5476#1 GACGCGATGGTGACGATCGACAGCACGTCCGCTATCACGTACAGGATGCCACTCTCGTCC 448
************************************** *********************
consensus_5476#0 AGCAGGCCCATTTTGGTCGTCAATTATGTCGATCGGTTCAAAGACGCTCAGTAAGGTAGG 1076
consensus_5476#1 AGCAGGCCCATTTCGGTCGTCAATTATGTCGATCGGTTCAAAGACGCTCAATCAGGTAGG 508
************* ************************************ * *******
consensus_5476#0 CTGACACGCTGCTAATGCGCCT-------------------------------------- 1098
consensus_5476#1 CTGACACGCTGCTAATGCGCCTGCAGATGATGATGATTTGCACCGATGAAGTATCGTCGC 568
**********************
consensus_5476#0 --------------------------------CACACCGATGCCATCGTTTGCGCTACCG 1126
consensus_5476#1 GTAACTGGCTGTTTGCACACCTTCCTTTACCTCACACCGATGCCATCGTTTACGCTACCG 628
******************* ********
consensus_5476#0 AGCGAGGAGGTTCGAAAATTCAGCTATTATTATGGGGTGTAGTAGCACACCTTGATGATT 1186
consensus_5476#1 AGCGAGGAGGTTCGAAAATTCAGCTATTATTATGGGGTGTAGTAGCACACCTTGATGATT 688
************************************************************
consensus_5476#0 GGTACTAATTTTGTCCGGGGCGATGAATTTAAATTTCCCGGTCGGACGCGGAAAGCGCAC 1246
consensus_5476#1 GGTACTAATTTTGTCCGGGGCGATGATTTTAAATTTCCCCGG------------------ 730
************************** ************ *
consensus_5476#0 CGGAACACTGCCTGCCGCAACACAACTGCTGCTTTGCGCCACCGTTCGGGCGTATACGTA 1306
consensus_5476#1 ------------------------------------------------------------
consensus_5476#0 TACGCACGACGCGTTCGCGGGTTGACACGCGTAATTATTGACTGGTCGACATTTTTAGCG 1366
consensus_5476#1 ------------------------------------------------------------
consensus_5476#0 ATAAGCCAAACGAGTGACGACGCTAACTGAGAGAAGAAGAGGA 1409
consensus_5476#1 -------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||