These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5484#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 663 fasta sequence [CCGCATCTCTCGACTCGCGTTAGATGCGCGCAGCACCACCATGTGTTTGTTAGTTCGCTGGGGAATGTTCTTACG-GT-CGGTTTGTGGTGGTGGTTTGTGTCGTCTCGCTGTCCCTCGTGCCGCTTTGAAGGGCCATTAATGCGTTGCTG-TGTGTTGAACGCGCTAATTCAGTGCGCGTCCGTATATGGTGTGGTGTGATAACAACGATCCAAACAACAATCCATCCGTGGATTAGCTTTCCCTAACGCGTTTTATCGCCAACAACCACAACTATTCTACCGAATGGTATAACAACACTCTTGCTACTACGGCATCAGCACTGTACAACTACTACTCTGCCTTAGCAAAACAAACGGAAGAAAAGTGCTTAACCCCGCGTGTGCAAATGTAATAAATCCCACCAATAAGGTCTGCATCGCATTGTGCAAAAAAGGGAGCGCGTGTGTGTCACATTGCGAAGAAGAAAGGCACGCGTAGAAGATTCAGCAACCGCGCTTCCCTTCTCTAATCTGCTGCGCAGTTTGTGTTGTGTGCTTGAAAACAGCCGTGTGTTGACGCGCCTGCCTCGTGCGTGTTTTTTTTGTTGATCGCGCTTGCGCTCATAACCTCGCTTATGGTGTTGCTTCTGTGCTGCGCTCACTGACTGACAGCTGTCGCCAGTTT] [+] EMBL BM577224 [CCGCATCTCTCGACTCGCGTTAGATGCGCGCAGCACCACCATGTGTTTGTTAGTTCGCTGGGGAATGTTCTTACG GT CGGTTTGTGGTGGTGGTTTGTGTCGTCTCGCTGTCCCTCGTGCCGCTTTGAAGGGCCATTAATGCGTTGCTG TGTGTTGAACGCGCTAATTCAGTGCGCGTCCGTATATGGTGTGGTGTGATAACAACGATCCAAACAACAATCCATCCGTGGATTAGCTTTCCCTAACGCGTTTTATCGCCAACAACCACAACTATTCTACCGAATGGTATAACAACACTCTTGCTACTACGGCATCAGCACTGTACAACTACTACTCTGCCTTAGCAAAACAAACGGAAGAAAAGTGCTTAACCCCGCGTGTGCAAATGTAATAAATCCCACCAATAAGGTCTGCATCGCATTGTGCAAAAAAGGGAGCGCGTGTGTGTCACATTGCGAAGAAGAAAGGCACGCGTAGAAGATTCAGCAACCGCGCTTCCCTTCTCTAATCTGCTGCGCAGTTTGTGTTGTGTGCTTGAAAACAGCCGTGTGTTGACGCGCCTGCCTCGTGCGTGTTTTTTTTGTTGATCGCGCTTGCGCTC ] [+] EMBL BM578093 [ ccgGTTCTTACG GT CGGTTTGTGGTGGTGGTTTGTGTCGTCTCGCTGTCCCTCGTGCCGCTTTGAAGGGCCATTAATGTGTTGCTGATGTGTTGAACGCGCTAATTCAGTGCGCGTCCGTATATGGTGTGGTGTGATAACAACGATCCAAACAACAATCCATCCGTGGATTAGCTTTCCCTAACGCGTTTTATCGCCAACAGGCACAACTATTCTACCGAATGGTATAACAACACTCTTGCTACTACGGCATCAGCACTGTACAACTACT CCTTAGCAAAACAAACGGAAGAAAAGTGCTTAACCCCGCGTGTGCAAATGTAATAAATCCCACCAATAAGGTCTGCATCGCATTGTGCAAAAAAGGGAGCGCGTGTGTGTCACATTGCGAAGAAGAAAGGCACGCGTAGAAGATTCAGCAACCGCGCTTCCCTTCTCTA ] [+] EMBL BM592161 [ ccgcccACGCGTCCGGTTTGTGGTGGTGGTTTGTGTCGTCTCGCTGTCCCTCGTGCCGCTTTGAAGGGCCATTAATGCGTTGCTG TGTGTTGAACGCGCTAATTCAGTGCGCGTCCGTATATGGTGTGGTGTGATAACAACGATCCAAACAACAATCCATCCGTGGATTAGCTTTCCCTAACGCGTTTTATCGCCAACAACCACAACTATTCTACCGAATGGTATAACAACACTCTTGCTACTACGGCATCAGCACTGTACAACTACTACTCTGCCTTAGCAAAACAAACGGAAGAAAAGTGCTTAACCCCGCGTGTGCAAATGTAATAAATCCCACCAATAAGGTCTGCATCGCATTGTGCAAAAAAGGGAGCGCGTGTGTGTCACATTGCGAAGAAGAAAGGCACGCGTAGAAGATTCAGCAACCGCGCTTCCCTTCTCTAATCTGCTGCGCAG TTGTGTTGTGTGCTTGAAAACAGCCGTGTGTTGACGCGCCTGCCTCGTGCGTGTTTTTTTTGTTGATCGCGCTTGCGCTCATAACCTCGCTTATGGTGTTGCTTCTGTGCTGCGCTCACTGACTGACAGCTGTCGCCAGTTT] consensusID : consensus_5484#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 642 fasta sequence [CCGCTTACGGTCGGTTTGTGGTGGTGGTTTGTGTCGTCTCGCTGTCCCTCGTGCCGCTTTGAAGGGCCATTATAATGTGTTGCTGATGTGTTGAACGCGCTAATTCAGTGCGCGTCCGTATATGGTGTGGTGTGATAACAACAATCCATCCGTGGATTAGCTTTCCCTAACGCGTTTTATCGCCAACAGGCACAACTATTCTACCGAATGGTATAAAACAACACTCTTGCTACTACGGCATCAGCACTGTACAACTACTACTCTGCCTTAGCAAAACAAACGGAAGAAAAGTGCTTAACCCCGCGTGTGCAAATGTAATAAATCCCACCAATAAGGTCTGCATCGCATTGTGCAAAAAGGGAGCGCGTGTGTGTCACATTGCGAAGAAGAAAGGCACGCGTAGAAGATTCAGCGACCGCGCTTCCCTTCTCTAATCTGCTGCGCAGTTGTGTTGTGTGCTTGAAAACAGCCGTGTGTTGACTTGACGCGCCTGCCTCGTGCGTGTTTTTTTGTTGATCGCGCTTGCGCTCATAACCTCGCTTATGGGGGTTGCTTCTGTGCTGCGCTCACTGACTGACAGCTGTCGCCAGTTTTTGTGTTAAGACGAAAACACTGTGCCGTGGTGTGTGAATGTGCCGTGGA] [+] EMBL BM607749 [CCGCTTACGGTCGGTTTGTGGTGGTGGTTTGTGTCGTCTCGCTGTCCCTCGTGCCGCTTTGAAGGGCCATTATAATGTGTTGCTGATGTGTTGAACGCGCTAATTCAGTGCGCGTCCGTATATGGTGTGGTGTGATAACAACAATCCATCCGTGGATTAGCTTTCCCTAACGCGTTTTATCGCCAACAGGCACAACTATTCTACCGAATGGTATAAAACAACACTCTTGCTACTACGGCATCAGCACTGTACAACTACTACTCTGCCTTAGCAAAACAAACGGAAGAAAAGTGCTTAACCCCGCGTGTGCAAATGTAATAAATCCCACCAATAAGGTCTGCATCGCATTGTGCAAAAAGGGAGCGCGTGTGTGTCACATTGCGAAGAAGAAAGGCACGCGTAGAAGATTCAGCGACCGCGCTTCCCTTCTCTAATCTGCTGCGCAGTTGTGTTGTGTGCTTGAAAACAGCCGTGTGTTGACTTGACGCGCCTGCCTCGTGCGTGTTTTTTTGTTGATCGCGCTTGCGCTCATAACCTCGCTTATGGGGGTTGCTTCTGTGCTGCGCTCACTGACTGACAGCTGTCGCCAGTTTTTGTGTTAAGACGAAAACACTGTGCCGTGGTGTGTGAATGTGCCGTGGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5484#0 CCGCATCTCTCGACTCGCGTTAGATGCGCGCAGCACCACCATGTGTTTGTTAGTTCGCTG 60 consensus_5484#1 ------------------------------------------------------------ consensus_5484#0 GGGAATGTTCTTACGGTCGGTTTGTGGTGGTGGTTTGTGTCGTCTCGCTGTCCCTCGTGC 120 consensus_5484#1 ------CCGCTTACGGTCGGTTTGTGGTGGTGGTTTGTGTCGTCTCGCTGTCCCTCGTGC 54 *************************************************** consensus_5484#0 CGCTTTGAAGGGCCATTA--ATGCGTTGCTG-TGTGTTGAACGCGCTAATTCAGTGCGCG 177 consensus_5484#1 CGCTTTGAAGGGCCATTATAATGTGTTGCTGATGTGTTGAACGCGCTAATTCAGTGCGCG 114 ****************** *** ******* **************************** consensus_5484#0 TCCGTATATGGTGTGGTGTGATAACAACGATCCAAACAACAATCCATCCGTGGATTAGCT 237 consensus_5484#1 TCCGTATATGGTGTGGTGTGATAACAAC------------AATCCATCCGTGGATTAGCT 162 **************************** ******************** consensus_5484#0 TTCCCTAACGCGTTTTATCGCCAACAACCACAACTATTCTACCGAATGGTATAA--CAAC 295 consensus_5484#1 TTCCCTAACGCGTTTTATCGCCAACAGGCACAACTATTCTACCGAATGGTATAAAACAAC 222 ************************** ************************** **** consensus_5484#0 ACTCTTGCTACTACGGCATCAGCACTGTACAACTACTACTCTGCCTTAGCAAAACAAACG 355 consensus_5484#1 ACTCTTGCTACTACGGCATCAGCACTGTACAACTACTACTCTGCCTTAGCAAAACAAACG 282 ************************************************************ consensus_5484#0 GAAGAAAAGTGCTTAACCCCGCGTGTGCAAATGTAATAAATCCCACCAATAAGGTCTGCA 415 consensus_5484#1 GAAGAAAAGTGCTTAACCCCGCGTGTGCAAATGTAATAAATCCCACCAATAAGGTCTGCA 342 ************************************************************ consensus_5484#0 TCGCATTGTGCAAAAAAGGGAGCGCGTGTGTGTCACATTGCGAAGAAGAAAGGCACGCGT 475 consensus_5484#1 TCGCATTGTGCAAAAA-GGGAGCGCGTGTGTGTCACATTGCGAAGAAGAAAGGCACGCGT 401 **************** ******************************************* consensus_5484#0 AGAAGATTCAGCAACCGCGCTTCCCTTCTCTAATCTGCTGCGCAGTTTGTGTTGTGTGCT 535 consensus_5484#1 AGAAGATTCAGCGACCGCGCTTCCCTTCTCTAATCTGCTGCGCAGTT-GTGTTGTGTGCT 460 ************ ********************************** ************ consensus_5484#0 TGAAAACAGCCGTGTGTTGAC-----GCGCCTGCCTCGTGCGTGTTTTTTTTGTTGATCG 590 consensus_5484#1 TGAAAACAGCCGTGTGTTGACTTGACGCGCCTGCCTCGTGCGTGTTTTTTT-GTTGATCG 519 ********************* ************************* ******** consensus_5484#0 CGCTTGCGCTCATAACCTCGCTTATGGTG-TTGCTTCTGTGCTGCGCTCACTGACTGACA 649 consensus_5484#1 CGCTTGCGCTCATAACCTCGCTTATGGGGGTTGCTTCTGTGCTGCGCTCACTGACTGACA 579 *************************** * ****************************** consensus_5484#0 GCTGTCGCCAGTTT---------------------------------------------- 663 consensus_5484#1 GCTGTCGCCAGTTTTTGTGTTAAGACGAAAACACTGTGCCGTGGTGTGTGAATGTGCCGT 639 ************** consensus_5484#0 --- consensus_5484#1 GGA 642 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||