These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5493#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 959 fasta sequence [TTGTGCATTAGTGCGAAAGAGCGAAAGAAAGAGAGAGAGAGAGAAAGTGAAAAGTCTGAAACGGCCCTTATAAAAAAATCCGCATAGTACGCTAAGTAAGAGAGAATACACAACAACGTTAACTGATAAGTCGTTTATATACACGAATATATGTTTTATATAAAAGAAGAAAAAAAGTGAAACACGCACGCACGCGAGTAAAAGAAGGAAGACAAGGTGAGAGTAGTCGGGAAGTTAGTTGAATAAGTCATCAAAAGTTGTAAAGCAGAGTAAAGAAGAGAATGATGATTGCATGAAAAAATGAGCTAAACTGAACTGAGAAAACT--AAAAAAAAAAGAAA--AGAAATGTTTAGGGACAAACCCGTATCGAAATCTATACCGAAACCCTTATTCATAAAAGGCGGAACTTAAGTACAGCAAACAGCAGCAGCAGCAGAAGCAGCAGAAGCAGCAGCAGCAGCAATTAATATACTATTACCTACTATTGCAAACTACTATTGCTAATTACTATTAACTATTACTACTGCTACTACAACTATTGCTAGAGTGTACACTTGCCGTGAAGTGCATTTTTTGCCTGGCAGGAGTGTTGCGCATAGCATTTCCTTTTTCCCCTTTTGTTTTTCGAAAGTAACCAAACAATCTGAATTATATTGATTTTATTGTCTTAGTTTATACCTTTTTTTCTCCGAGAAGATCGTAAAAATTTAGCATGCATCGCATAAAAAAACCTTTCAGTTGATTTAAATACAATTTTCCCTTACAAAGTCGCTTGTGCAGATGCAGTTGTTGTAAGAAATAGGAGAGAGAAGAGAAAAAAATCGAAACAATACACCCCAAAACCAACACACCCCATTTAAATAAACAAGGAAACATTAATCAACAATCAATAGTAAATCCGGAAGGCGTGGAGAGGATAAGTGCAACAAGATTAAAACACCACTATACAAACCGAACAAC] [+] EMBL BX628445 [TTGTGCATTAGTGCGAAAGAGCGAAAGAAAGAGAGAGAGAGAGAAAGTGAAAAGTCTGAAACGGCCCTTATAAAAAAATCCGCATAGTACGCTAAGTAAGAGAGAATACACAACAACGTTAACTGATAAGTCGTTTATATACACGAATATATGTTTTATATAAAAGAAGAAAAAAAGTGAAACACGCACGCACGCGAGTAAAAGAAGGAAGACAAGGTGAGAGTAGTCGGGAAGTTAGTTGAATAAGTCATCAAAAGTTGTAAAGCAGAGTAAAGAAGAGAATGATGATTGCATGAAAAAATGAGCTAAACTGAACTGAGAAAACT AAAAAAAAAAGAAA AGAAATGTTTAGGGACAAACCCGTATCGAAATCTATACCGAAACCCTTATTCATAAAAGGCGGAACTTAAGTACAGCAAACAGCAGCAGCAGCAGAAGCAGCAGAAGCAGCAGCAGCAGCAATTAATATACTATTACCTACTATTGCAAACTACTATTGCTAATTACTATTAACTATTACTACTGCTACTACAACTATTGCTAGAGTGTACACTTGCCGTGAAGTGCATTTTTTGCCTGGCAGGAGTGTTGCGCATAGCATTTCCTTTTTCCCCTTTTGTTTTTCGAAAGTAACCAAACAATCTGAATTATATTGATTTTATTGTCTTAGTTTATACCTTTTTTTCTCCGAGAAGATCGTAAAAATTTAGCATGCATCGCATAAAAAAACCTTTCAGTTGATTTAAATACAATTTTCCCTTACAAAGTCGCTTGTG ] [+] EMBL BM577342 [ ccgAGCAGAGTAAAGAAGAGAATGATGATTGCATGAAAAAATGAGCTAAACTGAACTGAGAAAACTAAAAAAAAAAAAGAAAAGAGAAATGTTTAGGGACAAACCCGTATCGAAATCAATACCGAAACCCTTATTCATAAAAGGCAGAACTTAAGTACAGCAAACAGCAGCAGC AGCAGCAGA AGCAGCAGCAATTAATATACTATTACCTACTATTGCAAACTACTATTGCTAATTACTATTAACTATTACTACTGCTACTACAACTATTGCTAGAGTGTACACTTGCCGTGAAGTGCATTTTTTGCCTGGCAGGAGTGTTGCGCATAGCATTTCCTTTTTCCCCTTTTGTTTTTCGAAAGTAACCAAACAATCTGAATTATATTGATTTTATTGTCTTAGTTTATACC TTTTTTCTCCGAGAAGATCGTAAAAATTTAGCATGCATCGCATAAAAAAACCTTTCAGTTGATTTAAATACAATTTTCCCTTACAAAGTCGCTTGTGCAGATGCAGTTGTTGTAAGAAATAGGAGAGAGAAGAGAAAAAAATCGAAACAATACACCCCAAAACCAACACACCCCATTTAAATAAACAAGGAAACATTAATCAACAATCAATAGTAAATCCGGAAGGCGTGGAGAGGATAAGTGCAACAAGATTAAAACACCACTATACAAACCGAACAAC] consensusID : consensus_5493#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 754 fasta sequence [TCAATGCAGTAACAGCAGAGGAGGAGGGATCGTCACGGGGGCACAGGGGCGAAGAAATGACACAACAAGTAAGCATAACTAAGGGAAACTTCAACTTACACACATAAGGAGGAGGAGGGAAAAAATCCGCATAGCACGCTAAGTAAGAGAGAATACACAACAACGTTAACTGATAAGTCGTTTATATACACGAATATATGTTTTATATAAAAGAAGAAAAAAAGTGAAACACGCACGCACGCGAGTAAAAGAAGGAAGACAAGGTGAGAGTAGTCGGGAAGTTAGTTGAATAAGTCATCAAAAGTTGCAAAGCAGAGTAAAGAAGAGAATGATGATTGCATGAAAAAATGAGCTAAACTGAACTGAGAAAACAAAAAAAAAAGAAAAGAAATGTTTAGGGACAAACCCGTATCGAAATCTATACCGAAACCCTTATTCATAAAAGGCGGAACTTAAGTACAGCAAACAGCAGCAGCAGCAGCAGAAGCAGCAGCAATTAATATACTATTACCTACTATTGCAAACTACTATTGCTAATTACTATTAACTATTACTACTGCTACTACAACCTATTGCTAGAGTGTACACTTGCCGTGAAGTGCATTTTTTGCCTGGCAGGAGTGTTGCGCATAGCATTTCCTTTTTCCCCCTTTTGTTTTTCGAAACTAACCAAACAATCTGAATTATATTGATTTTATTGTCTTAGTTTATACCTTTTTTTTCTCCGAGAAGATCGTAAAAATTTAGCATGCAT] [+] EMBL BX608176 [TCAATGCAGTAACAGCAGAGGAGGAGGGATCGTCACGGGGGCACAGGGGCGAAGAAATGACACAACAAGTAAGCATAACTAAGGGAAACTTCAACTTACACACATAAGGAGGAGGAGGGAAAAAATCCGCATAGCACGCTAAGTAAGAG ] [+] EMBL BM634657 [ ccgCAACAAGTAAGCATAACTAAGGGAAACTTCAACTTACAGACATAAGGAGGAGGAGGGAAAAAATCCGCATAGTACGCTAAGTAAGAGAGAATACACAACAACGTTAACTGATAAGTCGTTTATATACACGAATATATGTTTTATATAAAAGAAGAAAAAAAGTGAAACACGCACGCACGCGAGTAAAAGAAGGAAGACAAGGTGAGAGTAGTCGGGAAGTTAGTTGAATAAGTCATCAAAAGTTGCAAAGCAGAGTAAAGAAGAGAATGATGATTGCATGAAAAAATGAGCTAAACTGAACTGAGAAAACAAAAAAAAAAGAAAAGAAATGTTTAGGGACAAACCCGTATCGAAATCTATACCGAAACCCTTATTCATAAAAGGCGGAACTTAAGTACAGCAAACAGCAGCAGCAGCAGCAGAAGCAGCAGCAATTAATATACTATTACCTACTATTGCAAACTACTATTGCTAATTACTATTAACTATTACTACTGCTACTACAACCTATTGCTAGAGTGTACACTTGCCGTGAAGTGCATTTTTTGCCTGGCAGGAGTGTTGCGCATAGCATTTCCTTTTTCCCCCTTTTGTTTTTCGAAACTAACCAAACAATCTGAATTATATTGATTTTATTGTCTTAGTTTATACCTTTTTTTTCTCCGAGAAGATCGTAAAAATTTAGCATGCAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5493#0 ------------------------------------TTGTGCATTAGTGCGAAAGAGCGA 24 consensus_5493#1 TCAATGCAGTAACAGCAGAGGAGGAGGGATCGTCACGGGGGCACAGGGGCGAAGAAATGA 60 * *** * ***** * ** consensus_5493#0 AAGAAAGAGAGAGAGAGAGAAAGTGAAAAGTCTGAAACGGCCCTTATAA----------- 73 consensus_5493#1 CACAACAAGTAAGCATAACTAAGGGAAA--CTTCAACTTACACACATAAGGAGGAGGAGG 118 * ** ** ** * *** **** * ** * * **** consensus_5493#0 --AAAAATCCGCATAGTACGCTAAGTAAGAGAGAATACACAACAACGTTAACTGATAAGT 131 consensus_5493#1 GAAAAAATCCGCATAGCACGCTAAGTAAGAGAGAATACACAACAACGTTAACTGATAAGT 178 ************** ******************************************* consensus_5493#0 CGTTTATATACACGAATATATGTTTTATATAAAAGAAGAAAAAAAGTGAAACACGCACGC 191 consensus_5493#1 CGTTTATATACACGAATATATGTTTTATATAAAAGAAGAAAAAAAGTGAAACACGCACGC 238 ************************************************************ consensus_5493#0 ACGCGAGTAAAAGAAGGAAGACAAGGTGAGAGTAGTCGGGAAGTTAGTTGAATAAGTCAT 251 consensus_5493#1 ACGCGAGTAAAAGAAGGAAGACAAGGTGAGAGTAGTCGGGAAGTTAGTTGAATAAGTCAT 298 ************************************************************ consensus_5493#0 CAAAAGTTGTAAAGCAGAGTAAAGAAGAGAATGATGATTGCATGAAAAAATGAGCTAAAC 311 consensus_5493#1 CAAAAGTTGCAAAGCAGAGTAAAGAAGAGAATGATGATTGCATGAAAAAATGAGCTAAAC 358 ********* ************************************************** consensus_5493#0 TGAACTGAGAAAACTAAAAAAAAAAGAAAAGAAATGTTTAGGGACAAACCCGTATCGAAA 371 consensus_5493#1 TGAACTGAGAAAAC-AAAAAAAAAAGAAAAGAAATGTTTAGGGACAAACCCGTATCGAAA 417 ************** ********************************************* consensus_5493#0 TCTATACCGAAACCCTTATTCATAAAAGGCGGAACTTAAGTACAGCAAACAGCAGCAGCA 431 consensus_5493#1 TCTATACCGAAACCCTTATTCATAAAAGGCGGAACTTAAGTACAGCAAACAGCAGCAGCA 477 ************************************************************ consensus_5493#0 GCAGAAGCAGCAGAAGCAGCAGCAGCAGCAATTAATATACTATTACCTACTATTGCAAAC 491 consensus_5493#1 GCAG------------CAGAAGCAGCAGCAATTAATATACTATTACCTACTATTGCAAAC 525 **** *** **************************************** consensus_5493#0 TACTATTGCTAATTACTATTAACTATTACTACTGCTACTACAAC-TATTGCTAGAGTGTA 550 consensus_5493#1 TACTATTGCTAATTACTATTAACTATTACTACTGCTACTACAACCTATTGCTAGAGTGTA 585 ******************************************** *************** consensus_5493#0 CACTTGCCGTGAAGTGCATTTTTTGCCTGGCAGGAGTGTTGCGCATAGCATTTCCTTTTT 610 consensus_5493#1 CACTTGCCGTGAAGTGCATTTTTTGCCTGGCAGGAGTGTTGCGCATAGCATTTCCTTTTT 645 ************************************************************ consensus_5493#0 CCCC-TTTTGTTTTTCGAAAGTAACCAAACAATCTGAATTATATTGATTTTATTGTCTTA 669 consensus_5493#1 CCCCCTTTTGTTTTTCGAAACTAACCAAACAATCTGAATTATATTGATTTTATTGTCTTA 705 **** *************** *************************************** consensus_5493#0 GTTTATACCTTTTTTT-CTCCGAGAAGATCGTAAAAATTTAGCATGCATCGCATAAAAAA 728 consensus_5493#1 GTTTATACCTTTTTTTTCTCCGAGAAGATCGTAAAAATTTAGCATGCAT----------- 754 **************** ******************************** consensus_5493#0 ACCTTTCAGTTGATTTAAATACAATTTTCCCTTACAAAGTCGCTTGTGCAGATGCAGTTG 788 consensus_5493#1 ------------------------------------------------------------ consensus_5493#0 TTGTAAGAAATAGGAGAGAGAAGAGAAAAAAATCGAAACAATACACCCCAAAACCAACAC 848 consensus_5493#1 ------------------------------------------------------------ consensus_5493#0 ACCCCATTTAAATAAACAAGGAAACATTAATCAACAATCAATAGTAAATCCGGAAGGCGT 908 consensus_5493#1 ------------------------------------------------------------ consensus_5493#0 GGAGAGGATAAGTGCAACAAGATTAAAACACCACTATACAAACCGAACAAC 959 consensus_5493#1 --------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||