These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5503#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1084 fasta sequence [CCTACTGGGTAATATTTGATAAAATAGTAAAACAAAAGCAAACAGCCAACACAAGTATGTGTGTGTGTGTGTGCGTGTGTGTTAGTGTGTGTGCCGCGTGTAGTGAAGATTGGCAAAGGGCAGCGATTTTGATGGTTAACACATCAGGAGGATTATAAAGCGCTTTATGGATTATCCAGCACAGTCAGGCGACATTCTTCTGATAGTAACCTTTACGCATCTTTTGTTACATTACTGACCTTCCTCCTTTCTTCTTTCCACACCGCGTGCAGTGCAATTGCGTACATCCTTCCATCCCCACCTGGTTCTCTCATTCCAATGCACACTTTTGCACACACACACGCGCGCGCGCGCGGCCGATTAATTGATTCTCTGTTGCTGCGGAAACGCCAACAGTTTTTCTCTTTCTTTCGCTTCACAATGCAAAGCGCAGCATACACGCACACTCACTCACATACGGACACGGGTTTAGTGTGTTCTTCCGTACTGCGCTCCTTCATCTCTGCATCTCTCGTCTCGTTTCGATTCTCCTGCAACCCTTTTGCATAGGAGCCGGGTTGGCGTGTACTCTGTTGCCCTTGGTAACAGTGACGCACGCATCCCGGCTGCTCCAAAGCCTTCTACCACACTACTC------GGCAGATGGTGGTGGGGGTGCTAGCCTAGCAACCGACTGGTCTAGCACCTTTCCTAAACAGCT-GGCATGATTCTTTTGCTATTTTTTTTTTTCTCATTTCAAATTGTTCAAAGCATAGATGAATGTGTGTCTGTGTGTGTGTGACACTCAACACATCACCTCCCCTTTCGCGCAGAGTTAAAAATAATTTATGCAATGTGATATTTTTTTGTCGTCTGTACGTGTTAGCTAATATTAATTAATTAGTAATATGTGAGAGCATGTGAAGTGATGAAGAAGTGAATCGTAAAGGAGCGGATGATGGATTAAGATTGCATTGCGCGATGCACGACAAAGAAGATGATTGTAACAAGAAGAGGCCAAGTGTAATCTATTTTGCTGATAATAATGCTAATAATAATGATGATGAACCGTTTAAAGGTAACGTTCTGTAAAAAAAAAAAAAAAAAA] [+] EMBL CNS091UH [CCTACTGGGTAATATTTGATAAAATAGTAAAACAAAAGCAAACAGCCAACACAAGTATGTGTGTGTGTGTGTGCGTGTGTGTTAGTGTGTGTGCCGCGTGTAGTGAAGATTGGCAAAGGGCAGCGATTTTGATGGTTAACACATCAGGAGGATTATAAAGCGCTTTATGGATTATCCAGCACAGTCAGGCGACATTCTTCTGATAGTAACCTTTACGCATCTTTTGTTACATTACTGACCTTCCTCCTTTCTTCTTTCCACACCGCGTGCAGTGCAATTGCGTACATCCTTCCATCCCCACCTGGTTCTCTCATTCCAATGCACACTTTTGCACACACACACGCGCGCGCGCGCGGCCGATTAATTGATTCTCTGTTGCTGCGGAAACGCCAACAGTTTTTCTCTTTCTTTCGCTTCACAATGCAAAGCGCAGCATACACGCACACTCACTCACATACGGACACGGGTTTAGTGTGTTCTTCCGTACTGCGCTCCTTCATCTCTGCATCTCTCGTCTCGTTTCGATTCTCCTGCAACCCTTTTGCATAGGAGCCGGGTTGGCGTGTACTCTGTTGCCCTTGGTAACAGTGACGCACGCATCCCGGCTGCTCCAAAGCCTTCTACCACACTACTC GGCAGATGGTGGTGGGGGTGCTAGCCTAGCAACCGACTGGTCTAGCACCTTTCCTAAACAGCT GGCATGATTCTTTTGCTATTTTTTTTT ] [+] EMBL BM578187 [ ccgGTGTGTGCGTGTGTGTTAGTGTGTGTGCCGCGTGTAGTGAAGATTGGCAAAGGACAGCGATTTTGATGGTTAACACATCAGGAGGATTATAAAGCGCTTTATGGATTATCCAGCACAGTCAGGCGACATTCTTCTGATAGTAACCTTTACGCATCTTTTGTTACATTACTGACCTTCCTCCTTTCTTCTTTCCACACCGCGTGCAGTGCAATTGCGTACATCCTTCCATCCCCACCTGGTTCTCTCATTCCAATGCACACTTTTGCACACACACACGCGCGCGCGCGCGGCCGATTAATTGATTCTCTGTTGCTGCGGAAACGCCAACAGTTTTTCTCTTTCTTTCGCTTCACAATGCAAAGCGCAGCATACACGCACACTCACTCACATACGGACACGGGTTTAGTGTGTTCTTCCGTACTGCGCTCCTTCATCTCTGCATCTCTCGTCTCGTTTCGATTCTCCTGCAACCCTTTTGCATAGGAGCCGGGTTGGCGTGTACTCTGTTGCCCTTGGTAACAGTGACGCACGCATCCCGGCTGCTCCAAAGCCTTCTACCACACTACTCGAAAAAGGGGGGGGGGGGGGGGGGGGCTAACCTAGCAACCGACTGGTCTAGCACCTTTCCTAAACAGCTGGGCATGATT ] [-] EMBL CNS091UI [ CTGCGGAAACGCCAACAGTTTTTCTCTTTCTTTCGCTTCACAATGCAAAGCGCAGCATACACGCACACTCACTCACATACGGACACGGGTTTAGTGTGTTCTTCCGTACTGCGCTCCTTCATCTCTGCATCTCTCGTCTCGTTTCGATTCTCCTGCAACCCTTTTGCATAGGAGCCGGGTTGGCGTGTACTCTGTTGCCCTTGGTAACAGTGACGCACGCATCCCGGCTGCTCCAAAGCCTTCTACCACACTACTC GGCAGATGGTGGT GGGGTGCTAGCCTAGCAACCGACTGGTCTAGCACCTTTCCTAAACAGCT GGCATGATTCTTTTGCTATTTTTTTTTTTCTCATTTCAAATTGTTCAAAGCATAGATGAATGTGTGTCTGTGTGTGTGTGACACTCAACACATCACCTCCCCTTTCGCGCAGAGTTAAAAATAATTTATGCAATGTGATATTTTTTTGTCGTCTGTACGTGTTAGCTAATATTAATTAATTAGTAATATGTGAGAGCATGTGAAGTGATGAAGAAGTGAATCGTAAAGGAGCGGATGATGGATTAAGATTGCATTGCGCGATGCACGACAAAGAAGATGATTGTAACAAGAAGAGGCCAAGTGTAATCTATTTTGCTGATAATAATGCTAATAATAATGATGATGAACCGTTTAAAGGTAACGTTCTGTAAAAAAAAAAAAAAAAAA] consensusID : consensus_5503#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 206 fasta sequence [CCGGCAGCAGGATGTTTGGTTATCGTGCGTGCATGCGGCGTGGTATGCGTGTGTGCGGATCAAACCGGAGCGCAGGAAGAACGCGGATGATGGATTAAGATTGCATTGCGCGATGCACGACAAAGAAGATGATTGTAACAAGAAGAGGCCAAGTGTAATCTATTTTGCTGATAATAATGCTAATAATAATGATGATGAACCTGTTT] [+] EMBL BM583544 [CCGGCAGCAGGATGTTTGGTTATCGTGCGTGCATGCGGCGTGGTATGCGTGTGTGCGGATCAAACCGGAGCGCAGGAAGAACGCGGATGATGGATTAAGATTGCATTGCGCGATGCACGACAAAGAAGATGATTGTAACAAGAAGAGGCCAAGTGTAATCTATTTTGCTGATAATAATGCTAATAATAATGATGATGAACCTGTTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5503#0 CCTACTGGGTAATATTTGATAAAATAGTAAAACAAAAGCAAACAGCCAACACAAGTATGT 60 consensus_5503#1 ------------------------------------------------------------ consensus_5503#0 GTGTGTGTGTGTGCGTGTGTGTTAGTGTGTGTGCCGCGTGTAGTGAAGATTGGCAAAGGG 120 consensus_5503#1 ------------------------------------------------------------ consensus_5503#0 CAGCGATTTTGATGGTTAACACATCAGGAGGATTATAAAGCGCTTTATGGATTATCCAGC 180 consensus_5503#1 ------------------------------------------------------------ consensus_5503#0 ACAGTCAGGCGACATTCTTCTGATAGTAACCTTTACGCATCTTTTGTTACATTACTGACC 240 consensus_5503#1 ------------------------------------------------------------ consensus_5503#0 TTCCTCCTTTCTTCTTTCCACACCGCGTGCAGTGCAATTGCGTACATCCTTCCATCCCCA 300 consensus_5503#1 ------------------------------------------------------------ consensus_5503#0 CCTGGTTCTCTCATTCCAATGCACACTTTTGCACACACACACGCGCGCGCGCGCGGCCGA 360 consensus_5503#1 ------------------------------------------------------------ consensus_5503#0 TTAATTGATTCTCTGTTGCTGCGGAAACGCCAACAGTTTTTCTCTTTCTTTCGCTTCACA 420 consensus_5503#1 ------------------------------------------------------------ consensus_5503#0 ATGCAAAGCGCAGCATACACGCACACTCACTCACATACGGACACGGGTTTAGTGTGTTCT 480 consensus_5503#1 ------------------------------------------------------------ consensus_5503#0 TCCGTACTGCGCTCCTTCATCTCTGCATCTCTCGTCTCGTTTCGATTCTCCTGCAACCCT 540 consensus_5503#1 ------------------------------------------------------------ consensus_5503#0 TTTGCATAGGAGCCGGGTTGGCGTGTACTCTGTTGCCCTTGGTAACAGTGACGCACGCAT 600 consensus_5503#1 ------------------------------------------------------------ consensus_5503#0 CCCGGCTGCTCCAAAGCCTTCTACCACACTACTCGGCAGATGGTGGTGGGGGTGCTAGCC 660 consensus_5503#1 ------------------------------------------------------------ consensus_5503#0 TAGCAACCGACTGGTCTAGCACCTTTCCTAAACAGCTGGCATGATTCTTTTGCTATTTTT 720 consensus_5503#1 ------------------------------------------------------------ consensus_5503#0 TTTTTTCTCATTTCAAATTGTTCAAAGCATAGATGAATGTGTGTCTGTGTGTGTGTGACA 780 consensus_5503#1 ------------------------------------------------------------ consensus_5503#0 CTCAACACATCACCTCCCCTTTCGCGCAGAGTTAAAAATAATTTATGCAATGTGATATTT 840 consensus_5503#1 -------------------------------------------CCGGCAGCAGGATGTTT 17 *** *** *** consensus_5503#0 TTTTGTCGTCTGTACGTGTTAGCTAATATTAATTAATTAGTAATATGTGAGAGCATGTGA 900 consensus_5503#1 GGTTATCGTGCGTGCATGCGGCGTGGTAT---------------GCGTGTGTGCGGATCA 62 ** **** ** * ** * *** *** * ** * * consensus_5503#0 AGTGATGAAGAAGTGAATCGTAAAGGAGCGGATGATGGATTAAGATTGCATTGCGCGATG 960 consensus_5503#1 AACC-----GGAGCGCA--GGAAGAACGCGGATGATGGATTAAGATTGCATTGCGCGATG 115 * * ** * * * ** ********************************* consensus_5503#0 CACGACAAAGAAGATGATTGTAACAAGAAGAGGCCAAGTGTAATCTATTTTGCTGATAAT 1020 consensus_5503#1 CACGACAAAGAAGATGATTGTAACAAGAAGAGGCCAAGTGTAATCTATTTTGCTGATAAT 175 ************************************************************ consensus_5503#0 AATGCTAATAATAATGATGATGAACC-GTTTAAAGGTAACGTTCTGTAAAAAAAAAAAAA 1079 consensus_5503#1 AATGCTAATAATAATGATGATGAACCTGTTT----------------------------- 206 ************************** **** consensus_5503#0 AAAAA 1084 consensus_5503#1 ----- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||