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Anopheles gambiae
cluster # 5526 cluster # 5526       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5526#0 length = 1500 sequences # 3  
consensus_5526#1 length = 700 sequences # 1  

consensusID : consensus_5526#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1500
fasta sequence
                              [CCGCGGACGCGTGGGGGGTTTTTCCCGCTAGGTAGTAGAGAATCCGGAGTCCGATGCGACCATATCAGAGTGCACTAGTGACGACGACGACGACGACGACGACGGGACGGCAGGTGCGTGTGGTGGCCCGCGGGTGATAAGGGCAAGGTGAGAGACATTAAAAAGGTGTTAACGGTCGCGGTCGCTCTAAAGTGTACAGGCTGTGTGTGTGTTTGTGTATGTGTGTTTGTAGCGCACGCGTAACTAGTGAGAGTGATCGGTCCGAGAGTGGGGAGGAGAAGGAAAAAGCAGGAAGAAGAGGGGGAATACGTCCCGAAACCAGACCGGAAAGGAAGAGAAAGAGTGCCACCATCACAGGTGTTAATACAAAGCGTCAACAAAACAGTTTGCTACGCAGCAGCCAGAACGTAGACCACGAGACAACGGCACAACGCAAGGCCGCACAGCATCTGCACAGGAGCCAGACAGCGCGTACAGTACCAACCCGAAAACAACCACCACCATCATCATCATGGACATTGTTGCAGCAACAACCGAGCGGCTGGTCGATACGCTTGCGAACGGGACACTCTCGCTAACCCCCCGGCAAG-AT-GGCGAAGAGCATACCGATCACGACGACGACTCGCCAACGATCGCCAAAGTCACATCCATGGTGGTGCTGTTCAGCGTCAGCATGGTGTGCGGACTCGTACCCTTCAAGCTGGTGCGCTGGTTTAACCTCAACCCGGCCACCCCGTCCGGAGGCACACACCTCTTCCTGATCCGGCTACTGCTCTCCTTCGGCGGTGGTGCCCTCCTAAGCACTACCTTCCTGCATCTGCTGCCCGAGATCAATCACTCGATCGAAGCGCTCGTTGAGACGGGCGCCCTGCCCGCCCCGGATGAACTGCCCTTCCCGCTGGGTGAGTTTCTCCTTACGAGCGGGTTCTTCATGATCTACCTCACGGAGGAGCTGGTCCACTGGTGGATGCATCGCCGCTCGGCCAATGCACGGCGGATCGCACGGTCCGAAAAGACAGCGCCCGGTGGCAGCAGTACGATGGTACCGATCGATGGTGGCGCATCGAAGCACGACCACGCGCACGGACATTCGCATCTCCCGATCGGGAACGTAACCGCCGTCTACCCCGTGACGGATGTGGATGGGACGCAGGTCGTACCGAGTGTGGTTCCGGTGCCGCCAGCGCCAAGCGCTAACGGTCCCCTGCGCGGCCTGCTGATCGTACTCGCCCTCTCCATTCACGAGCTGTTCGAAGGGCTCGCGGTAGGTCTGGAACGGTCACCATCCCGGCCGTATGGTTGCTGTACCGGGTGCAGTCGGCCTCGGCCACAAGTTTGTGATTGCGTTCTGCGTTCCGCGGTTTGAGCTGNTAGGTAGCNCGGCGGTNCAGTTCCGCGATTGCCGNAACTGGTACATNTCGGCTACNTCGGGNGGNTNAACCCCGGCGGGANNAGGCTTGGTTTTGGCTCANAGTCGGGANTTCGAACGAACCAANAACC]

[+] EMBL BM587146             [CCGCGGACGCGTGGGGGGTTTTTCCCGCTAGGTAGTAGAGAATCCGGAGTCCGATGCGACCATATCAGAGTGCACTAGTGACGACGACGACGACGACGACGACGGGACGGCAGGTGCGTGTGGTGGCCCGCGGGTGATAAGGGCAAGGTGAGAGACATTAAAAAGGTGTTAACGGTCGCGGTCGCTCTAAAGTGTACAGGCTGTGTGTGTGTTTGTGTATGTGTGTTTGTAGCGCACGCGTAACTAGTGAGAGTGATCGGTCCGAGAGTGGGGAGGAGAAGGAAAAAGCAGGAAGAAGAGGGGGAATACGTCCCGAAACCAGACCGGAAAGGAAGAGAAAGAGTGCCACCATCACAGGTGTTAATACAAAGCGTCAACAAAACAGTTTGCTACGCAGCAGCCAGAACGTAGACCACGAGACAACGGCACAACGCAAGGCCGCACAGCATCTGCACAGGAGCCAGACAGCGCGTACAGTACCAACCCGAAAACAACCACCACCATCATCATCATGGACATTGTTGCAGCAACAACCGAGCGGCTGGTCGATACGCTTGCGAACGGGACACTCTCGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL BM587705             [                                                                                                                                                                                                                                           cCGCGTAACTAGTGAGAGTGATCGGTCCGAGAGTGGGGAGGAGAAGGAAAAAGCAGGAAGAAGAGGGGGAATACGTCCCGAAACCAGACCGGAAAGGAAGAGAAAGAGTGCCACCATCACAGGTGTTAATACAAAGCGTCAACAAAACAGTTTGCTACGCAGCAGCCAGAACGTAGACCACGAGACAACGGCACAACGCAAGGCCGCACAGCATCTGCACAGGAGCCAGACAGCGCGTACAGTACCAACCCGAAAACAACCACCACCATCATCATCATGGACATTGTTGCAGCAACAACCGAGCGGCTGGTCGATACGCTTGCGAACGGGACACTCTCGCTAACCCCCCGGCAAG AT GGCGAAGAGCATACCGATCACGACGACGACTCGCCAACGATCGCCAAAGTCACATCCATGGTGGTGCTGTTCAGCGTCAGCATGGTGTGCGGACTCGTACCCTTCAAGCTGGTGCGCTGGTTTAACCTCAACCCGGCCACCCCGTCCGGAGGCACACACCTCTTCCTGATCCGGCTACTGCTCTCCTTCGGCGGTGGTGCCCTCCTAAGCACTACCTTCCTGCATCTGCTGCCCGAGATCAATCACTCGATCGAAGCGCTCGTTGAGACGGGCGCCCTGCCCGCCCCGGATGAACTGCCCTTCCCGCTGGGTGAGTTTCTCCTTACGAGCGGGTTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL BX467402             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          CAAGAATCGGC ACGAG  GGCCGATCACGACGACGACTCACCAACGATCGCCAAAGTCACCTCCATGGTGGTGCTGTTCAGCGTCAGCATGGTGTGCGGACTCGTACCCTTCAAGCTGGTGCGCTGGTTTAACCTCAACCCGGCCACCCCGTCCGGAGGCACACACCTCTTCCTGATCCGGCTACTGCTCTCCTTCGGCGGTGGTGCCCTCCTAAGCACCACCTTCCTGCATCTGCTGCCCGAGATCAATCACTCGATCGAAGCGCTCGTTGAGACGGGCGCCCTGCCCGCCCCGGACGAACTGCCCTTCCCGCTGGGTGAGTTTCTCCTTACGAGCGGCTTCTTCATGATCTACCTCACGGAGGAGCTGGTCCACTGGTGGATGCATCGCCGCTCGGCCAATGCACGGCGGATCGCACGGTCCGAAAAGACAGCGCCCGGTGGCAGCAGTACGATGGTACCGATCGATGGTGGCGCATCGAAGCACGACCACGCGCACGGACATTCGCATCTCCCGATCGGGAACGTAACCGCCGTCTACCCCGTGACGGATGTGGATGGGACGCAGGTCGTACCGAGTGTGGTTCCGGTGCCGCCAGCGCCAAGCGCTAACGGTCCCCTGCGCGGCCTGCTGATCGTACTCGCCCTCTCCATTCACGAGCTGTTCGAAGGGCTCGCGGTAGGTCTGGAACGGTCACCATCCCGGCCGTATGGTTGCTGTACCGGGTGCAGTCGGCCTCGGCCACAAGTTTGTGATTGCGTTCTGCGTTCCGCGGTTTGAGCTGNTAGGTAGCNCGGCGGTNCAGTTCCGCGATTGCCGNAACTGGTACATNTCGGCTACNTCGGGNGGNTNAACCCCGGCGGGANNAGGCTTGGTTTTGGCTCANAGTCGGGANTTCGAACGAACCAANAACC]


>consensus_5526#0 CCGCGGACGCGTGGGGGGTTTTTCCCGCTAGGTAGTAGAGAATCCGGAGTCCGATGCGAC CATATCAGAGTGCACTAGTGACGACGACGACGACGACGACGACGGGACGGCAGGTGCGTG TGGTGGCCCGCGGGTGATAAGGGCAAGGTGAGAGACATTAAAAAGGTGTTAACGGTCGCG GTCGCTCTAAAGTGTACAGGCTGTGTGTGTGTTTGTGTATGTGTGTTTGTAGCGCACGCG TAACTAGTGAGAGTGATCGGTCCGAGAGTGGGGAGGAGAAGGAAAAAGCAGGAAGAAGAG GGGGAATACGTCCCGAAACCAGACCGGAAAGGAAGAGAAAGAGTGCCACCATCACAGGTG TTAATACAAAGCGTCAACAAAACAGTTTGCTACGCAGCAGCCAGAACGTAGACCACGAGA CAACGGCACAACGCAAGGCCGCACAGCATCTGCACAGGAGCCAGACAGCGCGTACAGTAC CAACCCGAAAACAACCACCACCATCATCATCATGGACATTGTTGCAGCAACAACCGAGCG GCTGGTCGATACGCTTGCGAACGGGACACTCTCGCTAACCCCCCGGCAAGATGGCGAAGA GCATACCGATCACGACGACGACTCGCCAACGATCGCCAAAGTCACATCCATGGTGGTGCT GTTCAGCGTCAGCATGGTGTGCGGACTCGTACCCTTCAAGCTGGTGCGCTGGTTTAACCT CAACCCGGCCACCCCGTCCGGAGGCACACACCTCTTCCTGATCCGGCTACTGCTCTCCTT CGGCGGTGGTGCCCTCCTAAGCACTACCTTCCTGCATCTGCTGCCCGAGATCAATCACTC GATCGAAGCGCTCGTTGAGACGGGCGCCCTGCCCGCCCCGGATGAACTGCCCTTCCCGCT GGGTGAGTTTCTCCTTACGAGCGGGTTCTTCATGATCTACCTCACGGAGGAGCTGGTCCA CTGGTGGATGCATCGCCGCTCGGCCAATGCACGGCGGATCGCACGGTCCGAAAAGACAGC GCCCGGTGGCAGCAGTACGATGGTACCGATCGATGGTGGCGCATCGAAGCACGACCACGC GCACGGACATTCGCATCTCCCGATCGGGAACGTAACCGCCGTCTACCCCGTGACGGATGT GGATGGGACGCAGGTCGTACCGAGTGTGGTTCCGGTGCCGCCAGCGCCAAGCGCTAACGG TCCCCTGCGCGGCCTGCTGATCGTACTCGCCCTCTCCATTCACGAGCTGTTCGAAGGGCT CGCGGTAGGTCTGGAACGGTCACCATCCCGGCCGTATGGTTGCTGTACCGGGTGCAGTCG GCCTCGGCCACAAGTTTGTGATTGCGTTCTGCGTTCCGCGGTTTGAGCTGNTAGGTAGCN CGGCGGTNCAGTTCCGCGATTGCCGNAACTGGTACATNTCGGCTACNTCGGGNGGNTNAA CCCCGGCGGGANNAGGCTTGGTTTTGGCTCANAGTCGGGANTTCGAACGAACCAANAACC



consensusID : consensus_5526#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 700
fasta sequence
                              [CCGCCCACGCGTCCGCCAGGTTGCAGGTTTGAAGGGTTTTTCCCGCTAGGTAGTAGAGAATCCGGAGTCCGATGCGACCATATCAGAGTGCACTAGTGACGACGACGACGACGACGACGACGGGACGGCAGGTGCGTGTGGTGGCCCGCGGGTGATAAGGGCAAGGTGAGAGACATTAAAAAGGTGTTAACGGTCGCGGTCGCTCTAAAGTGTACAGGCTGTGTGTGTGTTTGTGTATGTGTGTTTGTAGCGCACGCGTAACTTGAGAGTGATCGGTCCGAGAGTGGGGAGGAGAAGGAAAAAGCAGGAAGAAGAGGGGGAATACGTCCCGAAACCAGACCGGAAAGGAAGAGAAAGAGTGCCACCATCACAGGTGTTAATACAAAGCGTCAACAAAACAGTTTGCTACGCAGCAGCCAGAACGTAGACCACGAGACAACGGCACAACGCAAGGCCGCACAGCATCTGCACAGGAGCCAGACAGCGCGTACAGTACCAACCCGAAAACAACCACCACCATCATCATCATGGACATTGTTGCAGCAACAACCGAGCGGCTGGTCGATACGCTTGCGAACGGGACACTCTCGCTAACCCCCCGGCAAGATGGCGAAGAGCATACCGATCACGACGACGACTTCGCCAACGATCGCCAAAGTCACATCCATGGTGGTGCTGTTCAGCGTCAGCATGGTGTGCG]

[+] EMBL BM579807             [CCGCCCACGCGTCCGCCAGGTTGCAGGTTTGAAGGGTTTTTCCCGCTAGGTAGTAGAGAATCCGGAGTCCGATGCGACCATATCAGAGTGCACTAGTGACGACGACGACGACGACGACGACGGGACGGCAGGTGCGTGTGGTGGCCCGCGGGTGATAAGGGCAAGGTGAGAGACATTAAAAAGGTGTTAACGGTCGCGGTCGCTCTAAAGTGTACAGGCTGTGTGTGTGTTTGTGTATGTGTGTTTGTAGCGCACGCGTAACTTGAGAGTGATCGGTCCGAGAGTGGGGAGGAGAAGGAAAAAGCAGGAAGAAGAGGGGGAATACGTCCCGAAACCAGACCGGAAAGGAAGAGAAAGAGTGCCACCATCACAGGTGTTAATACAAAGCGTCAACAAAACAGTTTGCTACGCAGCAGCCAGAACGTAGACCACGAGACAACGGCACAACGCAAGGCCGCACAGCATCTGCACAGGAGCCAGACAGCGCGTACAGTACCAACCCGAAAACAACCACCACCATCATCATCATGGACATTGTTGCAGCAACAACCGAGCGGCTGGTCGATACGCTTGCGAACGGGACACTCTCGCTAACCCCCCGGCAAGATGGCGAAGAGCATACCGATCACGACGACGACTTCGCCAACGATCGCCAAAGTCACATCCATGGTGGTGCTGTTCAGCGTCAGCATGGTGTGCG]


>consensus_5526#1 CCGCCCACGCGTCCGCCAGGTTGCAGGTTTGAAGGGTTTTTCCCGCTAGGTAGTAGAGAA TCCGGAGTCCGATGCGACCATATCAGAGTGCACTAGTGACGACGACGACGACGACGACGA CGGGACGGCAGGTGCGTGTGGTGGCCCGCGGGTGATAAGGGCAAGGTGAGAGACATTAAA AAGGTGTTAACGGTCGCGGTCGCTCTAAAGTGTACAGGCTGTGTGTGTGTTTGTGTATGT GTGTTTGTAGCGCACGCGTAACTTGAGAGTGATCGGTCCGAGAGTGGGGAGGAGAAGGAA AAAGCAGGAAGAAGAGGGGGAATACGTCCCGAAACCAGACCGGAAAGGAAGAGAAAGAGT GCCACCATCACAGGTGTTAATACAAAGCGTCAACAAAACAGTTTGCTACGCAGCAGCCAG AACGTAGACCACGAGACAACGGCACAACGCAAGGCCGCACAGCATCTGCACAGGAGCCAG ACAGCGCGTACAGTACCAACCCGAAAACAACCACCACCATCATCATCATGGACATTGTTG CAGCAACAACCGAGCGGCTGGTCGATACGCTTGCGAACGGGACACTCTCGCTAACCCCCC GGCAAGATGGCGAAGAGCATACCGATCACGACGACGACTTCGCCAACGATCGCCAAAGTC ACATCCATGGTGGTGCTGTTCAGCGTCAGCATGGTGTGCG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5526#0      ------------------CCGCGGACGCGTGGGGGGTTTTTCCCGCTAGGTAGTAGAGAA 42
consensus_5526#1      CCGCCCACGCGTCCGCCAGGTTGCAGGTTTGAAGGGTTTTTCCCGCTAGGTAGTAGAGAA 60
                                            * * *  **  ***************************

consensus_5526#0      TCCGGAGTCCGATGCGACCATATCAGAGTGCACTAGTGACGACGACGACGACGACGACGA 102
consensus_5526#1      TCCGGAGTCCGATGCGACCATATCAGAGTGCACTAGTGACGACGACGACGACGACGACGA 120
                      ************************************************************

consensus_5526#0      CGGGACGGCAGGTGCGTGTGGTGGCCCGCGGGTGATAAGGGCAAGGTGAGAGACATTAAA 162
consensus_5526#1      CGGGACGGCAGGTGCGTGTGGTGGCCCGCGGGTGATAAGGGCAAGGTGAGAGACATTAAA 180
                      ************************************************************

consensus_5526#0      AAGGTGTTAACGGTCGCGGTCGCTCTAAAGTGTACAGGCTGTGTGTGTGTTTGTGTATGT 222
consensus_5526#1      AAGGTGTTAACGGTCGCGGTCGCTCTAAAGTGTACAGGCTGTGTGTGTGTTTGTGTATGT 240
                      ************************************************************

consensus_5526#0      GTGTTTGTAGCGCACGCGTAACTAGTGAGAGTGATCGGTCCGAGAGTGGGGAGGAGAAGG 282
consensus_5526#1      GTGTTTGTAGCGCACGCGTAACT--TGAGAGTGATCGGTCCGAGAGTGGGGAGGAGAAGG 298
                      ***********************  ***********************************

consensus_5526#0      AAAAAGCAGGAAGAAGAGGGGGAATACGTCCCGAAACCAGACCGGAAAGGAAGAGAAAGA 342
consensus_5526#1      AAAAAGCAGGAAGAAGAGGGGGAATACGTCCCGAAACCAGACCGGAAAGGAAGAGAAAGA 358
                      ************************************************************

consensus_5526#0      GTGCCACCATCACAGGTGTTAATACAAAGCGTCAACAAAACAGTTTGCTACGCAGCAGCC 402
consensus_5526#1      GTGCCACCATCACAGGTGTTAATACAAAGCGTCAACAAAACAGTTTGCTACGCAGCAGCC 418
                      ************************************************************

consensus_5526#0      AGAACGTAGACCACGAGACAACGGCACAACGCAAGGCCGCACAGCATCTGCACAGGAGCC 462
consensus_5526#1      AGAACGTAGACCACGAGACAACGGCACAACGCAAGGCCGCACAGCATCTGCACAGGAGCC 478
                      ************************************************************

consensus_5526#0      AGACAGCGCGTACAGTACCAACCCGAAAACAACCACCACCATCATCATCATGGACATTGT 522
consensus_5526#1      AGACAGCGCGTACAGTACCAACCCGAAAACAACCACCACCATCATCATCATGGACATTGT 538
                      ************************************************************

consensus_5526#0      TGCAGCAACAACCGAGCGGCTGGTCGATACGCTTGCGAACGGGACACTCTCGCTAACCCC 582
consensus_5526#1      TGCAGCAACAACCGAGCGGCTGGTCGATACGCTTGCGAACGGGACACTCTCGCTAACCCC 598
                      ************************************************************

consensus_5526#0      CCGGCAAGATGGCGAAGAGCATACCGATCACGACGACGACT-CGCCAACGATCGCCAAAG 641
consensus_5526#1      CCGGCAAGATGGCGAAGAGCATACCGATCACGACGACGACTTCGCCAACGATCGCCAAAG 658
                      ***************************************** ******************

consensus_5526#0      TCACATCCATGGTGGTGCTGTTCAGCGTCAGCATGGTGTGCGGACTCGTACCCTTCAAGC 701
consensus_5526#1      TCACATCCATGGTGGTGCTGTTCAGCGTCAGCATGGTGTGCG------------------ 700
                      ******************************************                  

consensus_5526#0      TGGTGCGCTGGTTTAACCTCAACCCGGCCACCCCGTCCGGAGGCACACACCTCTTCCTGA 761
consensus_5526#1      ------------------------------------------------------------
                                                                                  

consensus_5526#0      TCCGGCTACTGCTCTCCTTCGGCGGTGGTGCCCTCCTAAGCACTACCTTCCTGCATCTGC 821
consensus_5526#1      ------------------------------------------------------------
                                                                                  

consensus_5526#0      TGCCCGAGATCAATCACTCGATCGAAGCGCTCGTTGAGACGGGCGCCCTGCCCGCCCCGG 881
consensus_5526#1      ------------------------------------------------------------
                                                                                  

consensus_5526#0      ATGAACTGCCCTTCCCGCTGGGTGAGTTTCTCCTTACGAGCGGGTTCTTCATGATCTACC 941
consensus_5526#1      ------------------------------------------------------------
                                                                                  

consensus_5526#0      TCACGGAGGAGCTGGTCCACTGGTGGATGCATCGCCGCTCGGCCAATGCACGGCGGATCG 1001
consensus_5526#1      ------------------------------------------------------------
                                                                                  

consensus_5526#0      CACGGTCCGAAAAGACAGCGCCCGGTGGCAGCAGTACGATGGTACCGATCGATGGTGGCG 1061
consensus_5526#1      ------------------------------------------------------------
                                                                                  

consensus_5526#0      CATCGAAGCACGACCACGCGCACGGACATTCGCATCTCCCGATCGGGAACGTAACCGCCG 1121
consensus_5526#1      ------------------------------------------------------------
                                                                                  

consensus_5526#0      TCTACCCCGTGACGGATGTGGATGGGACGCAGGTCGTACCGAGTGTGGTTCCGGTGCCGC 1181
consensus_5526#1      ------------------------------------------------------------
                                                                                  

consensus_5526#0      CAGCGCCAAGCGCTAACGGTCCCCTGCGCGGCCTGCTGATCGTACTCGCCCTCTCCATTC 1241
consensus_5526#1      ------------------------------------------------------------
                                                                                  

consensus_5526#0      ACGAGCTGTTCGAAGGGCTCGCGGTAGGTCTGGAACGGTCACCATCCCGGCCGTATGGTT 1301
consensus_5526#1      ------------------------------------------------------------
                                                                                  

consensus_5526#0      GCTGTACCGGGTGCAGTCGGCCTCGGCCACAAGTTTGTGATTGCGTTCTGCGTTCCGCGG 1361
consensus_5526#1      ------------------------------------------------------------
                                                                                  

consensus_5526#0      TTTGAGCTGNTAGGTAGCNCGGCGGTNCAGTTCCGCGATTGCCGNAACTGGTACATNTCG 1421
consensus_5526#1      ------------------------------------------------------------
                                                                                  

consensus_5526#0      GCTACNTCGGGNGGNTNAACCCCGGCGGGANNAGGCTTGGTTTTGGCTCANAGTCGGGAN 1481
consensus_5526#1      ------------------------------------------------------------
                                                                                  

consensus_5526#0      TTCGAACGAACCAANAACC 1500
consensus_5526#1      -------------------
                                         




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)