These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5529#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 706 fasta sequence [CCGAAAAACAACAGTTTATCAAAACAAACGAACATAATAGAGAGGAAGCGTTATACATACATAAAAAATTAGAAAAAAAGAAAGAGAAACAAACGAGGAAGAAAAAGAGAGAGAGATAGAGAAAAAGAGGGCAAGAAATAGAGACAGAGGAAAAGGGAAGAAGATAACAGTACGAAAACAAACAAAGGATTAACAAACAAATCAAACAAACAAAAAATCTATTATACGAAAAGAGAGAGAAAGAGAAAAAAAACAAACACTCACACATGTTGAAAACTAAATACTGCGTCTACTGCTTTTTGTAATTGTGCGAGCCGCGGTTGTAAACTATATGTTTTTCTTTTGAAAAAAAAATATACATATGTCGTAATGAGTTCCTTCCGGTTTGCAAAATTATGTGACAAGACCGAGAGATAGCTAGGGTGTGTGTGTGTGTGGGTGGGGGCTGGAAAACATTTTTACACACTTAGAGAACACAGTTAGATAGAGCAAATTGGACCGATGCAGGCGCTCTTAGCATCGAGCAGAGCGTTGAGGAATGTTTTTTGATAAAAGACACAGATTTTTTTTTTATTTCCATCTTCCTTCATGGCCATGACACAGTTTGTAACACACATATATATGCACACATACACATTAAATTCTTTCACAAATTAGCACCCAGACATACACTCACACACACACACGGACACACACACACACACAC] [+] EMBL BM652538 [CCGAAAAACAACAGTTTATCAAAACAAACGAACATAATAGAGAGGAAGCGTTATACATACATAAAAAATTAGAAAAAAAGAAAGAGAAACAAACGAGGAAGAAAAAGAGAGAGAGATAGAGAAAAAGAGGGCAAGAAATAGAGACAGAGGAAAAGGGAAGAAGATAACAGTACGAAAACAAACAAAGGATTAACAAACAAATCAAACAAACAAAAAATCTATTATACGAAAAGAGAGAGAAAGAGAAAAAAAACAAACACTCACACATGTTGAAAACTAAATACTGCGTCTACTGCTTTTTGTAATTGTGCGAGCCGCGGTTGTAAACTATATGTTTTTCTTTTGAAAAAAAAATATACATATGTCGTAATGAGTTCCTTCCGGTTTGCAAAATTATGTGACAAGACCGAGAGATAGCTAGGGTGTGTGTGTGTGTGGGTGGGGGCTGGAAAACATTTTTACACACTTAGAGAACACAGTTAGATAGAGCAAATTGGACCGATGCAGGCGCTCTTAGCATCGAGCAGAGCGTTGAGGAATGTTTTTTGATAAAAGACACAGATTTTTTTTTTATTTCCATCTTCCTTCATGGCCATGACACAGTTTGTAACACACATATATATGCACACATACACATTAAATTCTTTCACAAATTAGCACCCAGACATACACTCACACACACACACGGACACACACACACACACAC] consensusID : consensus_5529#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 674 fasta sequence [CCGCGCGTTTTGTGAAAGCGTAAAGCGTAAAAATTAAAAGGTTAGCAAAGGTGTTTGTTCTTCTGTGGCTGGAACGGGGGATGAGAGTGTTTGCGTCCGTTGTGTGTACGCAACCTTCTTTTTTCCTCTCCGCATTGGGCATATATGGATTATAGAGATGGAACAGAAGAAGAAGAAGCAAAAAACAACTCTTTCATATTTAATAATGGTAGAAATAATTTGTTGGACGGGTCCGCTACGGAAACGAAGCAAACGAGCTGAGGGAGAGAGAGATAGAGAAAAAGAGGGCAAGAAATAGAGACAGAGGAAAAGGGAAGAAGATAACAGTACGAAAACAAACAAAGGATTAACAAACAAATCAAACAAACAAAAAATCTATTATACGAAAAGAGAGAGAAAGAGAAAAAAAACAAACACACACACACGCACACACACACACACACACACACACACACACACACACACACACACACACACACAATTATTTTGCATGGTTGTTGTAGACATCCGGTTAGGGACAGAGAATTTCGTAAAACCCTCCACTGTGAGCAGATGTTTGGCAGTAGCGTGGCTCAAACGTATTTCATGTTGGTCATTGTTTTGTTTCCGTTGTTACCTCCTGTGTCTCCATCTACTTGTGATAGGTTTTACTCCGGCGTCATCCTTCGGAAAAC] [+] EMBL BM609437 [CCGCGCGTTTTGTGAAAGCGTAAAGCGTAAAAATTAAAAGGTTAGCAAAGGTGTTTGTTCTTCTGTGGCTGGAACGGGGGATGAGAGTGTTTGCGTCCGTTGTGTGTACGCAACCTTCTTTTTTCCTCTCCGCATTGGGCATATATGGATTATAGAGATGGAACAGAAGAAGAAGAAGCAAAAAACAACTCTTTCATATTTAATAATGGTAGAAATAATTTGTTGGACGGGTCCGCTACGGAAACGAAGCAAACGAGCTGAGGGAGAGAGAGATAGAGAAAAAGAGGGCAAGAAATAGAGACAGAGGAAAAGGGAAGAAGATAACAGTACGAAAACAAACAAAGGATTAACAAACAAATCAAACAAACAAAAAATCTATTATACGAAAAGAGAGAGAAAGAGAAAAAAAACAAACACACACACACGCACACACACACACACACACACACACACACACACACACACACACACACACACACAATTATTTTGCATGGTTGTTGTAGACATCCGGTTAGGGACAGAGAATTTCGTAAAACCCTCCACTGTGAGCAGATGTTTGGCAGTAGCGTGGCTCAAACGTATTTCATGTTGGTCATTGTTTTGTTTCCGTTGTTACCTCCTGTGTCTCCATCTACTTGTGATAGGTTTTACTCCGGCGTCATCCTTCGGAAAAC] consensusID : consensus_5529#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 646 fasta sequence [CCGATGTGCAATTATTCAAGCGGGGAGGGGTGCAGGATAATAATACTTAACAGTTTAGCTATTGTACGCGTTTTGTGAAAGCGTAAAGCGTAAAAATTAAAAGGTTAGCAAAGGTGTTTGTTCTTCTGTGGCTGGAACGGGGGATGAGAGTGTTTGCGTCCGTTGTGTGTACGCAACTTTCTTTTTTCCTCTCCGCATTGTGCATATATGGATTATAGAGATGGAACAGAAGAAGAAGAAGCAAAAAACAACTCTTTCATATTTAATAATGGTAGAAATAATTTGTTGGACGGGTCCGCTACGGAAACGAAGCAAACGAGCTGAGGGAGAGAGAGATAGAGAAAAAGAGGGCAAGAAATAGAGATAGAGGAAAAGGGAAGAAGATAACAGTACGAAAACAAACAAAGGATTAACAAACAAATCAAACAAACAAAAAATCTATTATACGAAAAGAGAGAGAAAGAGAAAAAAAAACAAACACTCACACTCACACATGTTGAAAACTAAATACTGCGTCTACTGCTTTTGGTAATTGTGCGAGCCGCGGTTGTAAACTATATGTTTTTCTTTTGAAAAAAAAAATATACATATGTCGTAATGAGTTCCTTCCGGTTTGCAAAATTATGTGACAAGACCGAGAGATAGC] [+] EMBL BM580169 [CCGATGTGCAATTATTCAAGCGGGGAGGGGTGCAGGATAATAATACTTAACAGTTTAGCTATTGTACGCGTTTTGTGAAAGCGTAAAGCGTAAAAATTAAAAGGTTAGCAAAGGTGTTTGTTCTTCTGTGGCTGGAACGGGGGATGAGAGTGTTTGCGTCCGTTGTGTGTACGCAACTTTCTTTTTTCCTCTCCGCATTGTGCATATATGGATTATAGAGATGGAACAGAAGAAGAAGAAGCAAAAAACAACTCTTTCATATTTAATAATGGTAGAAATAATTTGTTGGACGGGTCCGCTACGGAAACGAAGCAAACGAGCTGAGGGAGAGAGAGATAGAGAAAAAGAGGGCAAGAAATAGAGATAGAGGAAAAGGGAAGAAGATAACAGTACGAAAACAAACAAAGGATTAACAAACAAATCAAACAAACAAAAAATCTATTATACGAAAAGAGAGAGAAAGAGAAAAAAAAACAAACACTCACACTCACACATGTTGAAAACTAAATACTGCGTCTACTGCTTTTGGTAATTGTGCGAGCCGCGGTTGTAAACTATATGTTTTTCTTTTGAAAAAAAAAATATACATATGTCGTAATGAGTTCCTTCCGGTTTGCAAAATTATGTGACAAGACCGAGAGATAGC] [+] EMBL BM593855 [ ccgTAATACTTAACAGTTTAGCTATTGTACGCGTTTTGTGAAAGCGTAAAGCGTAAAAATTAAAAGGTTAGCAAAGGTGTTTGTTCTTCTGTGGCTGGAACGGGGGATGAGAGTGTTTGCGTCCGTTGTGTGTACGCAACCTTCTTTTTTCCTCTCCGCATTGGGCATATATGGATTATAGAGATGGAACAGAAGAAGAAGAAGCAAAAAACAACTCTTTCATATTTAATAATGGTAGAAATAATTTGTTGGACGGGTCCGCTACGGAAACGAAGCAAACGAGCTGAGGGAGAGAGAGATAGAGAAAAAGAGGGCAAGAAATAGAGACAGAGGAAAAGGGAAGAAGATAACAGTACGAAAACAAACAAAGGATTAACAAACAAATCAAACAAACAAAAAATCTATTATACGAAAAGAGAGAGAAAGAG AAAAAAAACAA ACACTCACACATGTTGAAAACTAAATACTGCGTCTACTGCTTTTTGTAATTGTGCGAGCCGCGGTTGTAAACTATATGTTTTTCTTTTG AAAAAAAAATATACATATGTCGTAATGAGTTC ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5529#1 ------------------------------------------------------------ consensus_5529#2 CCGATGTGCAATTATTCAAGCGGGGAGGGGTGCAGGATAATAATACTTAACAGTTTAGCT 60 consensus_5529#0 ------------------------------------------------------------ consensus_5529#1 ---CCGCGCGTTTTGTGAAAGCGTAAAGCGTAAAAATTAAAAGGTTAGCAAAGGTGTTTG 57 consensus_5529#2 ATTGTACGCGTTTTGTGAAAGCGTAAAGCGTAAAAATTAAAAGGTTAGCAAAGGTGTTTG 120 consensus_5529#0 ------------------------------------------------------------ consensus_5529#1 TTCTTCTGTGGCTGGAACGGGGGATGAGAGTGTTTGCGTCCGTTGTGTGTACGCAACCTT 117 consensus_5529#2 TTCTTCTGTGGCTGGAACGGGGGATGAGAGTGTTTGCGTCCGTTGTGTGTACGCAACTTT 180 consensus_5529#0 ------------------------------------------------------------ consensus_5529#1 CTTTTTTCCTCTCCGCATTGGGCATATATGGATTATAGAGATGGAACAGAAGAAGAAGAA 177 consensus_5529#2 CTTTTTTCCTCTCCGCATTGTGCATATATGGATTATAGAGATGGAACAGAAGAAGAAGAA 240 consensus_5529#0 -----------------CCGAAAAACAACAGTTTATCAA-----AACAAACGAACATAAT 38 * * * * **** * **** * *** * * consensus_5529#1 GCAAAAAACAACTCTTTCATATTTAATAATGGTAGAAATAATTTGTTGGACGGGTCCGCT 237 consensus_5529#2 GCAAAAAACAACTCTTTCATATTTAATAATGGTAGAAATAATTTGTTGGACGGGTCCGCT 300 consensus_5529#0 AGAGAGGAAGCGTTATACATACATAA-AAAATTAGAAAAAAA-----GAAAGAG------ 86 * * * * * **** *** ** ****** ** * * * * consensus_5529#1 ACGGAAACGAAGCAAACGAGCTGAGGGAGAGAGAGATAGAGAAAAAGAGGGCAAGAAATA 297 consensus_5529#2 ACGGAAACGAAGCAAACGAGCTGAGGGAGAGAGAGATAGAGAAAAAGAGGGCAAGAAATA 360 consensus_5529#0 AAACAAACGAGGAAGA------AAAAGAGAGAGAGATAGAGAAAAAGAGGGCAAGAAATA 140 * ****** * * * * ********************************** consensus_5529#1 GAGACAGAGGAAAAGGGAAGAAGATAACAGTACGAAAACAAACAAAGGATTAACAAACAA 357 consensus_5529#2 GAGATAGAGGAAAAGGGAAGAAGATAACAGTACGAAAACAAACAAAGGATTAACAAACAA 420 consensus_5529#0 GAGACAGAGGAAAAGGGAAGAAGATAACAGTACGAAAACAAACAAAGGATTAACAAACAA 200 **** ******************************************************* consensus_5529#1 ATCAAACAAACAAAAAATCTATTATACGAAAAGAGAGAGAAAGAGAAAAAAAA-CAAACA 416 consensus_5529#2 ATCAAACAAACAAAAAATCTATTATACGAAAAGAGAGAGAAAGAGAAAAAAAAACAAACA 480 consensus_5529#0 ATCAAACAAACAAAAAATCTATTATACGAAAAGAGAGAGAAAGAGAAAAAAAA-CAAACA 259 ***************************************************** ****** consensus_5529#1 CACACACACGCACACACACACACACACACACACACACACACACACACACACACACACACA 476 consensus_5529#2 CTCACACTCACACATGTTGAAAACTAAATAC-TGCGTCTACTGCTTTTGGTAATTGTGCG 539 consensus_5529#0 CTCACAC------ATGTTGAAAACTAAATAC-TGCGTCTACTGCTTTTTGTAATTGTGCG 312 * ***** * * * * * ** * ** * * consensus_5529#1 CACAATTATTTTGCATGGT-TGTTGTAGACATCCGGTTAGGGACAGAGA-ATTTCGTAAA 534 consensus_5529#2 AGCCGCGGTTGTAAACTATATGTTTTTCTTTTGAAAAAAAAAATATACATATGTCGTAAT 599 consensus_5529#0 AGCCGCGGTTGTAAACTATATGTTTTTC-TTTTGAAAAAAAAATATACATATGTCGTAAT 371 * ** * * * **** * * * * * * * ** ****** consensus_5529#1 A----CCCTCCACTGTGAGCAGATGTTTGGCAGTAGCGTGGCTCAAACGTATTTCATGT- 589 consensus_5529#2 GAGTTCCTTCCGGTTTGCAAAATTATGTGACAAGACCGAGAGATAGC------------- 646 consensus_5529#0 GAGTTCCTTCCGGTTTGCAAAATTATGTGACAAGACCGAGAGATAGCTAGGGTGTGTGTG 431 ** *** * ** * * * ** ** * ** * * consensus_5529#1 ----TGGTCATTGTTTTGTTTCCGTTGTTACCTCCTGTGTCTCCATCTACTTGTGATAGG 645 consensus_5529#2 ------------------------------------------------------------ consensus_5529#0 TGTGTGGGTGGGGGCTGGAAAACATTTTTACACACTTAGAGAACACAGTTAGATAGAGCA 491 consensus_5529#1 TTTTACTCCGGCGTCATCCTTCGGAAAAC------------------------------- 674 consensus_5529#2 ------------------------------------------------------------ consensus_5529#0 AATTGGACCGATGCAGGCGCTCTTAGCATCGAGCAGAGCGTTGAGGAATGTTTTTTGATA 551 consensus_5529#1 ------------------------------------------------------------ consensus_5529#2 ------------------------------------------------------------ consensus_5529#0 AAAGACACAGATTTTTTTTTTATTTCCATCTTCCTTCATGGCCATGACACAGTTTGTAAC 611 consensus_5529#1 ------------------------------------------------------------ consensus_5529#2 ------------------------------------------------------------ consensus_5529#0 ACACATATATATGCACACATACACATTAAATTCTTTCACAAATTAGCACCCAGACATACA 671 consensus_5529#1 ----------------------------------- consensus_5529#2 ----------------------------------- consensus_5529#0 CTCACACACACACACGGACACACACACACACACAC 706 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||