These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5543#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 954 fasta sequence [CCGGAATCTCTGGAGCTGACTATTGTCACCGCGACAACCACGACGACCGCCGTCCCGGCAGCGGAAGAAGCGTCGACACACGACGGCAGCTGCCGAACGACGCGGAACACAGATGAAACACAGGCTAATAATCTAGACCTAGCGATAGAAACGACGACGTGCGGCAACGATGAGGTTGAACGGCCGACGCTGCCGCACGAATTATGTAAACGAACCAAGGAAGCTCACAGCAACGAAAGTAGTGGTGCCAGTAGCGTAGTACTAGAGTCTAAGATCACGCCGCCCTATCTTGCGACGGGAGCAAGAAACACATCAGCACAGCAATCGATCGTCTCAGTCGAGTGCCAGCAGGCGTCTCTCGGTTCCGATACGGACTCGGCCCTCTCCTCGATGAGTCCGCAGCCGAACAGCTTCACCGGCGACTCGCCGGACGACGATCCGTGGAACGTCCAGCGGTCGGTGATAGCTCGCGACGATGGTAAGCTGGCGCGGATCAAGCTGGAGCTGGATGAGATGCAGCAGCGGTACGATATCCTCAACCGGGACTACACGCTTGCCAAGGAACAGATCGACCAGCTGGAGCAGGAGCTGGTGAAGGCAACACAAGCTTCGCGCGAACAGAGCAAACTGAACGAACGGATCGCATACCTCGTTAAGCGCGAGGAAGACCTGCTAAAGGAAAGTCACGAGCTGCGCGAGCAGAACGAACTGCTCGAGTTTCGAATCATCGAGCTCGAGGAAAGCCACGACAAGTGGTCTCTACGAAACAACTCAAGCCCAACGGTCGGCGGTGGAACGACAAAGGACGGCTGGACCGATACCGAAAAGGAGCACGATGAGCTGATAATGCTCTCGGAGCGATCCGACTCCGGCGTCACCTCACCCAACAGCCATCACCATCTGGAGGACCAGCAGAGCGGCGTACCGTCGCCGTGCGATCTCTCCCTGCTGGAT] [+] EMBL BM618627 [CCGGAATCTCTGGAGCTGACTATTGTCACCGCGACAACCACGACGACCGCCGTCCCGGCAGCGGAAGAAGCGTCGACACACGACGGCAGCTGCCGAACGACGCGGAACACAGATGAAACACAGGCTAATAATCTAGACCTAGCGATAGAAACGACGACGTGCGGCAACGATGAGGTTGAACGGCCGACGCTGCCGCACGAATTATGTAAACGAACCAAGGAAGCTCACAGCAACGAAAGTAGTGGTGCCAGTAGCGTAGTACTAGAGTCTAAGATCACGCCGCCCTATCTTGCGACGGGAGCAAGAAACACATCAGCACAGCAATCGATCGTCTCAGTCGAGTGCCAGCAGGCGTCTCTCGGTTCCGATACGGACTCGGCCCTCTCCTCGATGAGTCCGCAGCCGAACAGCTTCACCGGCGACTCGCCGGACGACGATCCGTGGAACGTCCAGCGGTCGGTGATAGCTCGCGACGATGGTAAGCTGGCGCGGATCAAGCTGGAGCTGGATGAGATGCAGCAGCGGTACGATATCCTCAACCGGGACTACACGCTTGCCAAGGAACAGATCGACCAGCTGGAGCAGGAGCTGGTGAAGGCAACACAAGCTTCGCGCGAACAGAGCAAACTGAACGAACGGATCGCATACCTCGTTAAGCGCGAGGAAGACCT ] [+] EMBL BM581101 [ CCGCCCACGCGTCCGCCCACGCGTCCGCGACACACGACGGCAGCTGCCGAACGACGCGGAACACAGATGAAACACAGGCTAATAATCTAGACCTAGCGATAGAAACGACGACGTGCGGCAACGATGAGGTTGAACGGCCGACGCTGCCGCACGAATTATGTAAACGAACCAAGGAAGCTCACAGCAACGAAAGTAGTGGTGCCAGTAGCGTAGTACTAGAGTCTAAGATCACGCCGCCCTATCTTGCGACGGGAGCAATAAACACATCAGCACAGCAATCGATCGTCTCAGTCGAGTGCCAGCAGGCGTCTCTCGGTTCCGATACGGACTCGGCCCTCTCCTCGATGAGTCCGCAGCCGAACAGCTTCACCGGCGACTCGCCGGACGACGATCCGTGGAACGTCCAGCGGTCGGTGATAGCTCGCGACGATGGTAAGCTGGCGCGGATCAAGCTGGAGCTGGATGAGATGCAGCAGCGGTACGATATCCTCAACCGGGACTACACGCTTGCCAAGGAACAGATCGACCAGCTGGAGCAGGAGCTGGTGAAGGCAACACAAGCTTCGCGCGAACAGAGCAAACTGAACGAACGGATCGCATACCTCGTTAAGCGCGAGGAAGACCTGCTAAAGGAAAGTCACGAGCTGCGCGAGCAGAACGAACTGCTCGAGTTTCGAATCATCGAGCTCGAGGAAAGCCAC ] [+] EMBL BM630320 [ GGAACGTCCAGCGGTCGGTGATAGCTCGCGACGATGGTAAGCTGGCGCGGATCAAGCTGGAGCTGGATGAGATGCGGGAGCGGTACGATATCCTCAACCGGGACTACACGCTTGCCAAGGAACAGATCGACCAGCTGGAGCAGGAGCTGGTGAAGGCAACACAAGCTTCGCGCGAACAGAGCAAACTGAACGAACGGATCGCATACCTCGTTAAGCGCGAGGAAGACCTGCTAAAGGAAAGTCACGAGCTGCGCGAGCAGAACGAACTGCTCGAGTTTCGAATCATCGAGCTCGAGGAAAGCCACGACAAGTGGTCTCTACGAAACAACTCAAGCCCAACGGTCGGCGGTGGAACGACAAAGGACGGCTGGACCGATACCGAAAAGGAGCACGATGAGCTGATAATGCTCTCGGAGCGATCCGACTCCGGCGTCACCTCACCCAACAGCCATCACCATCTGGAGGACCAGCAGAGCGGCGTACCGTCGCCGTGCGATCTCTCCCTGCTGGAT] consensusID : consensus_5543#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 341 fasta sequence [GGCAAGCATCGGTNTAAGGAAGGACGGCTGGACCGCATACCGAAAAGGAGCACGATGAGCTGATAATGCTCTCGGAGCGATCCGACTCCGGCGTCACCTCACCCAACAGCCATCACCATCTGGAGGACCAGCAGAGCGGCGTACCGTCGCCGTGCGATCTCTCCCTGCTGGATCAAATACCGACGGACGATGTGCGCAAGCGGCTCATCGCCATGACCAAGCGCACGTGCTACGACGAGGAGGACAAGCTGTGTCTGCTCCAGATCCTGTCGCTGCTGAACAATCTCGAGGCCCTGTCGCAGGACCATGAGATTGCCGGCGACGACNGTGAGCCTGGAGTC] [+] EMBL BX468960 [GGCAAGCATCGGTNTAAGGAAGGACGGCTGGACCGCATACCGAAAAGGAGCACGATGAGCTGATAATGCTCTCGGAGCGATCCGACTCCGGCGTCACCTCACCCAACAGCCATCACCATCTGGAGGACCAGCAGAGCGGCGTACCGTCGCCGTGCGATCTCTCCCTGCTGGATCAAATACCGACGGACGATGTGCGCAAGCGGCTCATCGCCATGACCAAGCGCACGTGCTACGACGAGGAGGACAAGCTGTGTCTGCTCCAGATCCTGTCGCTGCTGAACAATCTCGAGGCCCTGTCGCAGGACCATGAGATTGCCGGCGACGACNGTGAGCCTGGAGTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5543#0 CCGGAATCTCTGGAGCTGACTATTGTCACCGCGACAACCACGACGACCGCCGTCCCGGCA 60 consensus_5543#1 ------------------------------------------------------------ consensus_5543#0 GCGGAAGAAGCGTCGACACACGACGGCAGCTGCCGAACGACGCGGAACACAGATGAAACA 120 consensus_5543#1 ------------------------------------------------------------ consensus_5543#0 CAGGCTAATAATCTAGACCTAGCGATAGAAACGACGACGTGCGGCAACGATGAGGTTGAA 180 consensus_5543#1 ------------------------------------------------------------ consensus_5543#0 CGGCCGACGCTGCCGCACGAATTATGTAAACGAACCAAGGAAGCTCACAGCAACGAAAGT 240 consensus_5543#1 ------------------------------------------------------------ consensus_5543#0 AGTGGTGCCAGTAGCGTAGTACTAGAGTCTAAGATCACGCCGCCCTATCTTGCGACGGGA 300 consensus_5543#1 ------------------------------------------------------------ consensus_5543#0 GCAAGAAACACATCAGCACAGCAATCGATCGTCTCAGTCGAGTGCCAGCAGGCGTCTCTC 360 consensus_5543#1 ------------------------------------------------------------ consensus_5543#0 GGTTCCGATACGGACTCGGCCCTCTCCTCGATGAGTCCGCAGCCGAACAGCTTCACCGGC 420 consensus_5543#1 ------------------------------------------------------------ consensus_5543#0 GACTCGCCGGACGACGATCCGTGGAACGTCCAGCGGTCGGTGATAGCTCGCGACGATGGT 480 consensus_5543#1 ----------------------------------GGCAAGCATCGGTNT--AAGGAAGGA 24 ** * * * ** ** consensus_5543#0 AAGCTGG--CGCGGATCAAGCTGGAGCTGGATGAGATGCAGCAGCGGTACGATATCCTCA 538 consensus_5543#1 CGGCTGGACCGCATACCGAAAAGGAGCACGATGAGCTGATAATGCTCTCGGAGCGATCCG 84 ***** *** * * * ***** ****** ** ** * ** * consensus_5543#0 ACCGGGACTACACGCTTGCCAAGGAACAGATCGACCAGCTGGAGCAGGAGCTGGTGAAGG 598 consensus_5543#1 ACTCCGGCGTCAC-CTCACCCAACAGCC-ATC-ACCATCTGGA---GGACCAGCAGAGCG 138 ** * * *** ** ** * * * *** **** ***** *** * * ** * consensus_5543#0 CAACACAAGCTTCGCGCGAACAGAGCAAACTGAACGAACGGATCGCATACCTCGTTAAGC 658 consensus_5543#1 GCGTACCGTCGCCGTGCGATCTCTCCCTGCTGGATCAAATACCGACGGACGATGT-GCGC 197 ** * ** **** * * *** * ** * ** ** ** consensus_5543#0 GCGAGGAAGACCTGCTAAAGGAAAGTCACGAGCTGCG-CGAGCAGAACGAACTGCTCGAG 717 consensus_5543#1 AAGCGGCTCATCGCCATGACCAAGCGCACGTGCTACGACGAGGAGGACAAGCTGTGTCTG 257 * ** * * * * ** **** *** ** **** ** ** * *** * consensus_5543#0 TTTCGAATCATCGAGCTCGAGGAAAGCCACGACAAGTGGTCTCTACGAAACAACTCAAGC 777 consensus_5543#1 CTCCAGATCCTGTCGCTGCTGAACAATCTCGA-----GGCCCTGTCGCAGGACCATGAGA 312 * * *** * *** * * * * *** ** * ** * * * ** consensus_5543#0 CCAACGGTCGGCGGTGGAACGACAAAGGACGGCTGGACCGATACCGAAAAGGAGCACGAT 837 consensus_5543#1 TTGCCGG-CGACGACNGTGAGCCTGGAGTC------------------------------ 341 *** ** ** * * * * * consensus_5543#0 GAGCTGATAATGCTCTCGGAGCGATCCGACTCCGGCGTCACCTCACCCAACAGCCATCAC 897 consensus_5543#1 ------------------------------------------------------------ consensus_5543#0 CATCTGGAGGACCAGCAGAGCGGCGTACCGTCGCCGTGCGATCTCTCCCTGCTGGAT 954 consensus_5543#1 --------------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||