These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5560#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 798 fasta sequence [GACCGTCGCAAAGGCTTTAACCGCGAGCTGGCCCGATATGTGCTGAAGAAATTGGCCTTGTTTCATGCGATCCCGATAGCGTTGCGCTACCTGAAGCCGGACATGTTTGAGGCAGGCATTCATAAGTATCTCGTCAAGATTGATATCGATGCGGGGTTGAGCCAGGCGACGCTCCGGCAGATGATGGATGTGTTTCGGCAGGATATCCTCCGGACCGGGGTCGAGGCGGGGCTGGCCGGGCGGGCTTACGCCAAGATAAACGAGTGCCATCGACGCCAGGCGCAGCTGATCTCGGACCAGCTGACCTGCTACTGTACCATGCTGCACAACGACCTGTGGGTGAACAATATGATGATCAAATATGACCCGACCGGGCAGGTCCCGTGCAGCCTCAAGTTCGTCGACTTCCAGCTGATACAGATGGACTCGCTCGTGCGGGACGTTATTTTCTTCATCATCACCAGCGTCAACGATCCGGAGCTGGAGGCGCAGCTGGACGGCTACTTCGAGTATTACTTCCAGCAGCTGGCCGCCAACCTGGCCCGGCTGCAGTTTCCCTCCCAGGACGAGCTGACGCTTGAAAGCTTCCGGGAGGAGATCGACCGGGTCGCACCGTTCGAGCTGTATCACATCGTATCGATGCTGCGCGTGGTGCTGGCGCGCAAGGAATCGATCCCGGACCAGAGCGAACAGGACGCGGCACTGTTCTTCAACGACAACCTGGTAGAGGAGGACTACTATCGACGGCTCGAGGTCACGCTGCGGATCTACGATCAGCGGGGCTGGATATAGGGCCCG] [+] EMBL BX610599 [GACCGTCGCAAAGGCTTTAACCGCGAGCTGGCCCGATATGTGCTGAAGAAATTGGCCTTGTTTCATGCGATCCCGATAGCGTTGCGCTACCTGAAGCCGGACATGTTTGAGGCAGGCATTCATAAGTATCTCGTCAAGATTGATATCGATGCGGGGTTGAGCCAGGCGACGCTCCGGCAGATGATGGATGTGTTTCGGCAGGATATCCTCCGGACCGGGGTCGAGGCGGGGCTGGCCGGGCGGGCTTACGCCAAGATAAACGAGTGCCATCGACGCCAGGCGCAGCTGATCTCGGACCAGCTGACCTGCTACTGTACCATGCTGCACAACGACCTGTGGGTGAACAATATGATGATCAAATATGACCCGACCGGGCAGGTCCCGTGCAGCCTCAAGTTCGTCGACTTCCAGCTGATACAGATGGACTCGCTCGTGCGGGACGTTATTTTCTTCATCATCACCAGCGTCAACGATCCGGAGCTGGAGGCGCAGCTGGACGGCTACTTCGAGTATTACTTCCAGCAGCTGGCCGCCAACCTGGCCCGGCTGCAGTTTCCCTCCCAGGACGAGCTGACGCTTGAAAGCTTCCGGGAGGAGATCGACCGGGTCGCACCGTTCGAGCTGTATCACATCGTATCGATGCTGCGCGTGGTGCTGGCGCGCAAGGAATCGATCCCGGACCAGAGCGAACAGGACGCGGCACTGTTCTTCAACGACAACCTGGTAGAGGA ] [+] EMBL BX610598 [ AGGCTTTAACCGCGAGCTGGCCCGATATGTGCTGAAGAAATTGGCCTTGTTTCATGCGATCCCGATAGCGTTGCGCTACCTGAAGCCGGACATGTTTGAGGCAGGCATTCATAAGTATCTCGTCAAGATTGATATCGATGCGGGGTTGAGCCAGGCGACGCTCCGGCAGATGATGGATGTGTTTCGGCAGGATATCCTCCGGACCGGGGTCGAGGCGGGGCTGGCCGGGCGGGCTTACGCCAAGATAAACGAGTGCCATCGACGCCAGGCGCAGCTGATCTCGGACCAGCTGACCTGCTACTGTACCATGCTGCACAACGACCTGTGGGTGAACAATATGATGATCAAATATGACCCGACCGGGCAGGTCCCGTGCAGCCTCAAGTTCGTCGACTTCCAGCTGATACAGATGGACTCGCTCGT ] [+] EMBL BX614962 [ GATCCCGATAGCGTTGCGCTATCTGAAGCCGGACATGTTTGAGGCAGGCATTCATAAGTATCTCGTCAAGATTGATATCGATGCGGGGTTGAGCCAGGCGACGCTCCGGCAGATGATGGATGTGTTTCGGCAGGATATCCTCCGGACCGGGGTCGAGGCGGGGCTGTCCGGGCGGGCTTACGCCAAGATAAACGAGTGCCATCGACGCCAGGCGCAGCTGATCTCGGACCAGCTGACCTGCTACTGTACCATGCTGCACAACGACCTGTGGGTGAACAATATGATGATCAAATATGACCCGACCGGGCAGGTCCCGTGCAGCCTCAAGTTCGTCGACTTCCAGCTGATACAGATGGACTCGCTCGTGCGGGACGTTATTTTCTTCATCATCACCAGCGTCAACGATCCGGAGCTGGAGGCGCAGCTGGACGGCTACTTCGAGTATTACTTCCAGCAGCTGGCCGCCAACCTGGCCCGGCTGCAGTTTCCCTCCCAGGACGAGCTGACGCTTGAAAGCTTCCGGGAGGAGATCGACCGGGTCGCACCGTTCGAGCTGTATCACATCGTATCGATGCTGCGCGTGGTGCTGGCGCGCAAGGAATCGATCCCGGACCAGAGCGAACAGGACGCGGCACTGTTCTTCAACGACAACCTGGTAGAGGAGGACTACTATCGACGGCTCGAGGTCACGCTGCGGATCTACGATCAGCGGGGCTGGATATAGGGCCCG] consensusID : consensus_5560#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 90 fasta sequence [GCGTTGCGCCACCTGAAGCCGGACAGGTATGAGGCAGGCATTCATAAGTATCTCGTCAAGAAGGAAATCGATGCGGGGGTGAGCCAGGCG] [+] EMBL BX610600 [GCGTTGCGCCACCTGAAGCCGGACAGGTATGAGGCAGGCATTCATAAGTATCTCGTCAAGAAGGAAATCGATGCGGGGGTGAGCCAGGCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5560#0 GACCGTCGCAAAGGCTTTAACCGCGAGCTGGCCCGATATGTGCTGAAGAAATTGGCCTTG 60 consensus_5560#1 ------------------------------------------------------------ consensus_5560#0 TTTCATGCGATCCCGATAGCGTTGCGCTACCTGAAGCCGGACATGTTTGAGGCAGGCATT 120 consensus_5560#1 ------------------GCGTTGCGCCACCTGAAGCCGGACAGGTATGAGGCAGGCATT 42 ********* *************** ** ************* consensus_5560#0 CATAAGTATCTCGTCAAGATTGATATCGATGCGGGGTTGAGCCAGGCGACGCTCCGGCAG 180 consensus_5560#1 CATAAGTATCTCGTCAAGAAGGAAATCGATGCGGGGGTGAGCCAGGCG------------ 90 ******************* ** ************ *********** consensus_5560#0 ATGATGGATGTGTTTCGGCAGGATATCCTCCGGACCGGGGTCGAGGCGGGGCTGGCCGGG 240 consensus_5560#1 ------------------------------------------------------------ consensus_5560#0 CGGGCTTACGCCAAGATAAACGAGTGCCATCGACGCCAGGCGCAGCTGATCTCGGACCAG 300 consensus_5560#1 ------------------------------------------------------------ consensus_5560#0 CTGACCTGCTACTGTACCATGCTGCACAACGACCTGTGGGTGAACAATATGATGATCAAA 360 consensus_5560#1 ------------------------------------------------------------ consensus_5560#0 TATGACCCGACCGGGCAGGTCCCGTGCAGCCTCAAGTTCGTCGACTTCCAGCTGATACAG 420 consensus_5560#1 ------------------------------------------------------------ consensus_5560#0 ATGGACTCGCTCGTGCGGGACGTTATTTTCTTCATCATCACCAGCGTCAACGATCCGGAG 480 consensus_5560#1 ------------------------------------------------------------ consensus_5560#0 CTGGAGGCGCAGCTGGACGGCTACTTCGAGTATTACTTCCAGCAGCTGGCCGCCAACCTG 540 consensus_5560#1 ------------------------------------------------------------ consensus_5560#0 GCCCGGCTGCAGTTTCCCTCCCAGGACGAGCTGACGCTTGAAAGCTTCCGGGAGGAGATC 600 consensus_5560#1 ------------------------------------------------------------ consensus_5560#0 GACCGGGTCGCACCGTTCGAGCTGTATCACATCGTATCGATGCTGCGCGTGGTGCTGGCG 660 consensus_5560#1 ------------------------------------------------------------ consensus_5560#0 CGCAAGGAATCGATCCCGGACCAGAGCGAACAGGACGCGGCACTGTTCTTCAACGACAAC 720 consensus_5560#1 ------------------------------------------------------------ consensus_5560#0 CTGGTAGAGGAGGACTACTATCGACGGCTCGAGGTCACGCTGCGGATCTACGATCAGCGG 780 consensus_5560#1 ------------------------------------------------------------ consensus_5560#0 GGCTGGATATAGGGCCCG 798 consensus_5560#1 ------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||