These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5567#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 664 fasta sequence [CCGCGGACGCGTGGGGTGAAGCCGTTGAACCGCTATGAATTGGATTGTTAATGTTTTAGTAAGCAGAAAAAAAGATTACCATATAATGCTGATATAATAGTACGCGTATAGAAATGAACTAAAGTATATTGATATGAATGAAGCGCAGGTGTTGAGATGGGAAATGCGGCATGGGGCGGCATCGCGCATTGCACAACCATTGGAAGAGAATCAAAATTATGAGACTGCATTTTTTGCTTTCGTTTTCGCTCGCCATATTTTATTCGATCGTGCAACAATTTGTACCTTTCTTCCTGTTTCTTTCCGCGATATGCGTCACATTAATATGCATTGCAATAAGGAAGCGTGCGCACGGCACCATACAATTGGACCGTAACAGTTTGATGCGGTTTTAATTTAATATTGCTTTTGTTGCTGCTACCCTTTCGCAAAAGGGGGTTTCAAATTAAACGTAAAACACGCTATAGGCGAGGTCTACAGTGTGAAGCAAAAAAAAAAGGGGTAAGGGCAGCTCAAAAGGCTCTGTGAAAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATAGAGGCAAAGGAAATGTAAGCTTACTAATCGAACAAAACAAGTAATAACGTCGTAAAAAGATTAAATATTGTGAT] [+] EMBL BM582943 [CCGCGGACGCGTGGGGTGAAGCCGTTGAACCGCTATGAATTGGATTGTTAATGTTTTAGTAAGCAGAAAAAAAGATTACCATATAATGCTGATATAATAGTACGCGTATAGAAATGAACTAAAGTATATTGATATGAATGAAGCGCAGGTGTTGAGATGGGAAATGCGGCATGGGGCGGCATCGCGCATTGCACAACCATTGGAAGAGAATCAAAATTATGAGACTGCATTTTTTGCTTTCGTTTTCGCTCGCCATATTTTATTCGATCGTGCAACAATTTGTACCTTTCTTCCTGTTTCTTTCCGCGATATGCGTCACATTAATATGCATTGCAATAAGGAAGCGTGCGCACGGCACCATACAATTGGACCGTAACAGTTTGATGCGGTTTTAATTTAATATTGCTTTTGTTGCTGCTACCCTTTCGCAAAAGGGGGTTTCAAATTAAACGTAAAACACGCTATAGGCGAGGTCTACAGTGTGAAGCAAAAAAAAAAGGGGTAAGGGCAGCTCAAAAGGCTCTGTGAAAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATAGAGGCAAAGGAAATGTAAGCTTACTAATCGAACAAAACAAGTAATAACGTCGTAAAAAGATTAAATATTGTGAT] consensusID : consensus_5567#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 655 fasta sequence [CCGTGCAGTGGCACACCTCCATTTGAGTTTTGCTACAATTTGAATCATGGCCAGCACAATATGACGAGCAACGAAACGTGTAAGAGCGAATGGGAACCGTCGCGTACGGCTGAGTGTCGCTACAAAATCCATCGTTTCTTCTTCACCAACGATCAATACTCGATCGTCATTTTCGTACGCAACCGGGTGTCGAACTACTTCACCCAGATTGGCATACAGTTCTACGAGAATCAACCAAAGTCCCAATTGTCGGTGATCATTGTACCGATCGCGTTCGGTCTGCTGGCCGTGCTGATGGTCGTGTTCGGGATGGCGTACTACATTCAAAACCGGGACCGCTTTATCGTGGAGGTAGCCGATTTCAATTTTGGCGACACGAGCTCGCTGGATGACGACATGGAGTACAAAACGTTCCACCAGCGATTGGTGGACAGTTTGCGAGATTCGGTCAGAATACCGCGCTTCAATTTCCGGCGCTCGAGCGCCCACGACGTGGATGACATTTCACCATCGTCCGGTGCCGCCGGTGAATCTTCGCTGCGGTACGGCTCTATGACCTAAGCTGGAACGTGAGGCAACAGCGTCAGGTAGGTTTTTGTTCGGCGGTTGCGTCGGAGCGTTTCTTTCCAGAAAGTGAGATCCTCTCCTTCTCCAC] [+] EMBL BM590837 [CCGTGCAGTGGCACACCTCCATTTGAGTTTTGCTACAATTTGAATCATGGCCAGCACAATATGACGAGCAACGAAACGTGTAAGAGCGAATGGGAACCGTCGCGTACGGCTGAGTGTCGCTACAAAATCCATCGTTTCTTCTTCACCAACGATCAATACTCGATCGTCATTTTCGTACGCAACCGGGTGTCGAACTACTTCACCCAGATTGGCATACAGTTCTACGAGAATCAACCAAAGTCCCAATTGTCGGTGATCATTGTACCGATCGCGTTCGGTCTGCTGGCCGTGCTGATGGTCGTGTTCGGGATGGCGTACTACATTCAAAACCGGGACCGCTTTATCGTGGAGGTAGCCGATTTCAATTTTGGCGACACGAGCTCGCTGGATGACGACATGGAGTACAAAACGTTCCACCAGCGATTGGTGGACAGTTTGCGAGATTCGGTCAGAATACCGCGCTTCAATTTCCGGCGCTCGAGCGCCCACGACGTGGATGACATTTCACCATCGTCCGGTGCCGCCGGTGAATCTTCGCTGCGGTACGGCTCTATGACCTAAGCTGGAACGTGAGGCAACAGCGTCAGGTAGGTTTTTGTTCGGCGGTTGCGTCGGAGCGTTTCTTTCCAGAAAGTGAGATCCTCTCCTTCTCCAC] consensusID : consensus_5567#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 653 fasta sequence [CCGCGGACGCGTGGGCGGACGCGTGGGGCTTTATCGTAGAGGTGGCCGATTTCAACTTTGGCGACACGAGCTCGCTGGATGACGACATGGAGTACAAAACGTTCCACCAGCGATTGGTGGACAGTTTGCGAGACTCGGTCAGAATACCGCGCTTCAATTTCCGGCGCTCGAGCGCCCACGACGTGGATGACATTTCACCATCGTCCGGTGCGGCCGGTGAATCTTCGCTGCGGTACGGCTCTATGACCTAAGCTGGAACGTGAGGTAACAGCGTCAGGTAGGTTTTTGTTCGGCGGTTGCGTCGGAGCGTTTCTTTCCAGAAAGTGAGATCCTCTCCTTCTACACCTTCCTTCATTCGTTCCCAATAACCCCCCCCCCACCCCACACCCCCACCTGCTATCTCGGGCTGATGATGCACGGACAGTGAAAGTGGTGATTAGTCGTGAGGTGAATTTACTTTTCGCACAAGAGCTCGATCAGTAGTGATCGATTGGAACGGTGTACGGTTTAAAACGATCGGTGGTATCAATCGAGTCAATTTCAAGTCGTAGTCCAGTGAGTCTAGTAGTGAAGCCGTTGAACCGCTATGAATTGGATTGTTAATGTTTTAGTAAGCAGAAAAAAAGATTACCATATAATGCTGATATAATAGT] [+] EMBL BM643187 [CCGCGGACGCGTGGGCGGACGCGTGGGGCTTTATCGTAGAGGTGGCCGATTTCAACTTTGGCGACACGAGCTCGCTGGATGACGACATGGAGTACAAAACGTTCCACCAGCGATTGGTGGACAGTTTGCGAGACTCGGTCAGAATACCGCGCTTCAATTTCCGGCGCTCGAGCGCCCACGACGTGGATGACATTTCACCATCGTCCGGTGCGGCCGGTGAATCTTCGCTGCGGTACGGCTCTATGACCTAAGCTGGAACGTGAGGTAACAGCGTCAGGTAGGTTTTTGTTCGGCGGTTGCGTCGGAGCGTTTCTTTCCAGAAAGTGAGATCCTCTCCTTCTACACCTTCCTTCATTCGTTCCCAATAACCCCCCCCCCACCCCACACCCCCACCTGCTATCTCGGGCTGATGATGCACGGACAGTGAAAGTGGTGATTAGTCGTGAGGTGAATTTACTTTTCGCACAAGAGCTCGATCAGTAGTGATCGATTGGAACGGTGTACGGTTTAAAACGATCGGTGGTATCAATCGAGTCAATTTCAAGTCGTAGTCCAGTGAGTCTAGTAGTGAAGCCGTTGAACCGCTATGAATTGGATTGTTAATGTTTTAGTAAGCAGAAAAAAAGATTACCATATAATGCTGATATAATAGT] consensusID : consensus_5567#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 624 fasta sequence [CCGGTTGGCGAATCGAGAAAGAAGCAATCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGCAAAGGAAATGTAAGCTTACTAATCGAACAAAACAAGTAATAACGTCGTAAAAAGATTAAATATTGTGATATTGATGCATCTACGGTTTATTTTACACAGTTATATTTTAAGTCGGTACCAACGTATGAATCGCCAGGCAAATTCCGTTTCGCAAAAGAGAAAACAAATCATTAGATTGCAACACACAACTGCCAAAGTAAAAATTTGTGGAAATTAGCAATTTTCTATTGTCCGTTTCGTACAAAATTTTGAATATTACACAATTAGGTTTGGTTGCGCGCGGGCTCGAATATGTGGTTGGAAGTTGTCCAAAGGTGTGAAACGGCCAAGTGGGTGTGGCAGTTCTGCTTGTAGCAGGTCAAATGCAGATAGCGAAATGAACCGCCAAGACGCAAAACAATGCAACGCAAATCATTATTCAGCAAAAAGGCAAAAAATATCTGCGAGCGACGAGATAGAAGCAAATGTAAAAAAGAAAAGCAAATATAGTAGATAGTTTTTACGAAACCACTAACTGGCAGGCACCGTGGCACATTGCACCTAGAG] [+] EMBL BM601723 [CCGGTTGGCGAATCGAGAAAGAAGCAATCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGCAAAGGAAATGTAAGCTTACTAATCGAACAAAACAAGTAATAACGTCGTAAAAAGATTAAATATTGTGATATTGATGCATCTACGGTTTATTTTACACAGTTATATTTTAAGTCGGTACCAACGTATGAATCGCCAGGCAAATTCCGTTTCGCAAAAGAGAAAACAAATCATTAGATTGCAACACACAACTGCCAAAGTAAAAATTTGTGGAAATTAGCAATTTTCTATTGTCCGTTTCGTACAAAATTTTGAATATTACACAATTAGGTTTGGTTGCGCGCGGGCTCGAATATGTGGTTGGAAGTTGTCCAAAGGTGTGAAACGGCCAAGTGGGTGTGGCAGTTCTGCTTGTAGCAGGTCAAATGCAGATAGCGAAATGAACCGCCAAGACGCAAAACAATGCAACGCAAATCATTATTCAGCAAAAAGGCAAAAAATATCTGCGAGCGACGAGATAGAAGCAAATGTAAAAAAGAAAAGCAAATATAGTAGATAGTTTTTACGAAACCACTAACTGGCAGGCACCGTGGCACATTGCACCTAGAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5567#1 CCGTGCAGTGGCACACCTCCATTTGAGTTTTGCTACAATTTGAATCATGGCCAGCACAAT 60 consensus_5567#2 ------------------------------------------------------------ consensus_5567#0 ------------------------------------------------------------ consensus_5567#3 ------------------------------------------------------------ consensus_5567#1 ATGACGAGCAACGAAACGTGTAAGAGCGAATGGGAACCGTCGCGTACGGCTGAGTGTCGC 120 consensus_5567#2 ------------------------------------------------------------ consensus_5567#0 ------------------------------------------------------------ consensus_5567#3 ------------------------------------------------------------ consensus_5567#1 TACAAAATCCATCGTTTCTTCTTCACCAACGATCAATACTCGATCGTCATTTTCGTACGC 180 consensus_5567#2 ------------------------------------------------------------ consensus_5567#0 ------------------------------------------------------------ consensus_5567#3 ------------------------------------------------------------ consensus_5567#1 AACCGGGTGTCGAACTACTTCACCCAGATTGGCATACAGTTCTACGAGAATCAACCAAAG 240 consensus_5567#2 ------------------------------------------------------------ consensus_5567#0 ------------------------------------------------------------ consensus_5567#3 ------------------------------------------------------------ consensus_5567#1 TCCCAATTGTCGGTGATCATTGTACCGATCGCGTTCGGTCTGCTGGCCGTGCTGATGGTC 300 consensus_5567#2 ------------------------------------------------------------ consensus_5567#0 ------------------------------------------------------------ consensus_5567#3 ------------------------------------------------------------ consensus_5567#1 GTGTTCGGGATGGCGTAC-TACATT-CAAAACCGGGACCGCTTTATCGTGGAGGTAGCCG 358 consensus_5567#2 ----------CCGCGGACGCGTGGG-CGGACGCGTGGG-GCTTTATCGTAGAGGTGGCCG 48 consensus_5567#0 ----------CCGCGGACGCGTGGGGTGAAGCCGTTGAACCGCTATGAATTGGATTGTTA 50 consensus_5567#3 -----------------CCGGTTGG-CGAATCGAGAAAGAAGCAATCGAGAGAGAGAGAG 42 * * ** consensus_5567#1 AT--TTCAATTTTGGCGACACGAGCTCGCTGGATGACGAC-ATGGAGTACAAAACGTTCC 415 consensus_5567#2 AT--TTCAACTTTGGCGACACGAGCTCGCTGGATGACGAC-ATGGAGTACAAAACGTTCC 105 consensus_5567#0 ATGTTTTAGTAAGCAGAAAAAAAGATTACCATATAATGCTGATATAATAGTACGCGTATA 110 consensus_5567#3 AG----AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGCAAAGGAAATGTAAGCTTACT 98 * ** * * * * * * * consensus_5567#1 AC---CAGCGATTGGTGGACAGTTTGCGAGATTCGGTCAGAATACCGCGCTTCAATTTCC 472 consensus_5567#2 AC---CAGCGATTGGTGGACAGTTTGCGAGACTCGGTCAGAATACCGCGCTTCAATTTCC 162 consensus_5567#0 GA---AATGAACTAAAGTATATTGATATGAATGAAGCGCAGGTGTTGAGATGGGAAATGC 167 consensus_5567#3 AATCGAACAAAACAAGTAATAACGTCGTAAA--AAGATTAAATATTGTGATATTGA-TGC 155 * * * * * * * * * * * * consensus_5567#1 GGCGCTCGAGCGC-CCACGACGTGGATGAC-ATTTCACCATCGTCCGG--TGCC-GCCGG 527 consensus_5567#2 GGCGCTCGAGCGC-CCACGACGTGGATGAC-ATTTCACCATCGTCCGG--TGCG-GCCGG 217 consensus_5567#0 GGCATGGGGCGGCATCGCGCATTGCACAACCATTGGAAGAGAATCAAAATTATGAGACTG 227 consensus_5567#3 ATCTACGGTTTATTTTACACAGT-TATATT--TTAAGTCGGTACCAACG-TATGAATCGC 211 * * * * * ** * * * consensus_5567#1 TGAATCTTCGCTGCGGTACGGCTCTATGACCTAAGCTGGAACGTGAGGCAAC----AGCG 583 consensus_5567#2 TGAATCTTCGCTGCGGTACGGCTCTATGACCTAAGCTGGAACGTGAGGTAAC----AGCG 273 consensus_5567#0 CATTTTTTGCTTTCGTTTTCGCTCGCCATATTTTATTCGATCGTGCAACAATTTGTACCT 287 consensus_5567#3 CAGG---CAAATTCCGTTTCGCAAAAGAGAAAACAAATCATTAGATTGCAACACACAACT 268 * * * ** * ** * * consensus_5567#1 TCAGGTAGGTTTTTGTTCGGCGGTT-GCGTCGGAGCGTTTCTTTCCAGAAAGTGAGATCC 642 consensus_5567#2 TCAGGTAGGTTTTTGTTCGGCGGTT-GCGTCGGAGCGTTTCTTTCCAGAAAGTGAGATCC 332 consensus_5567#0 TTCTTCCTGTTTCTTTCCGCGATAT-GCGTCACATTAATATGCATTGCAATAAGGAAGCG 346 consensus_5567#3 GCCAAAGTAAAAATTTGTGGAAATTAGCAATTTTCTATTGTCCGTTTCG-TACAAAATTT 327 * * * * ** * * consensus_5567#1 TCTCCTTCTCCAC----------------------------------------------- 655 consensus_5567#2 TCTCCTTCTACACCTTCCTTCATTCGTTCCCAATAACCCCCCCCCCACCCCACACCCCCA 392 consensus_5567#0 TG-CGCACGGCACCATACA--ATTGGACCGTAACAGTTTGATG--CGGTTTTAATTTAAT 401 consensus_5567#3 TG------AATATTACACA--ATTAGGTT----TGGTTGCGCGC-GGGCTCGAATATGTG 374 * * consensus_5567#1 ------------------------------------------------------------ consensus_5567#2 CCTGCTATCTCGGGCTGATGATGCACGGACAGTGAAAGTGGTGATTAGTCGTGAGGTGAA 452 consensus_5567#0 ATTGCTTTT----GTTGCTGCTACCCTTTCGCAAAAGGGGGTTTCAAATTAAACGTAAAA 457 consensus_5567#3 GTTGGAAGTT--GTCCAAAGGTGTGAAACGGCCAAGTGGGTGTGGCAGTTCTGCTTGTAG 432 consensus_5567#1 ------------------------------------------------------------ consensus_5567#2 TTTACTTTTCGCACAAGAGCTCGATCAGTAGTGATCGATTGGAACGGTGTACGGTTTAAA 512 consensus_5567#0 CACGCTATAGGCGAGGTCTACAGTGTGAAGCAAAAAAAAAAGGGGTAAGGGCAGCTCAAA 517 consensus_5567#3 CAGGTCAAATGC--AGATAGCGAAATGAACCGCCAAGACGCAAAACAA-TGCAACGCAAA 489 consensus_5567#1 ------------------------------------------------------------ consensus_5567#2 ACGATCGGTGGTATCAATCGAGTCAATTTCAAGTCGTAG-TCCAGTGAGTCTAG-TAGTG 570 consensus_5567#0 AGGCTCTGTGAAAGGGAGAGAGAGAGAGAGAGAGAGAGA-GAGAGAGAGAGAGA-GAGAG 575 consensus_5567#3 TCATTATTCAGCAAAAAGGCAAAAAATATCTGCGAGCGACGAGATAGAAGCAAATGTAAA 549 consensus_5567#1 ------------------------------------------------------------ consensus_5567#2 A-AGCCGTTGAACCGCTATGAATTGGATT-GTTAATGTTTTAGTAAGCAGAAAAAAAGAT 628 consensus_5567#0 AGAGAGAGAGAGATAGAGGCAAAGGAAAT-GTAAGCTTACTAATCGAACAAAACAAGTAA 634 consensus_5567#3 AAAGAAAAGCAAATATAGTAGATAGTTTTTACGAAACCACTAACTGGCAGGCACC-GTGG 608 consensus_5567#1 ------------------------------ consensus_5567#2 TACCATATAATGCTGATATAATAGT----- 653 consensus_5567#0 TAACGTCGTAAAAAGATTAAATATTGTGAT 664 consensus_5567#3 CA-CATTGCACCTAGAG------------- 624 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||