These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5575#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 676 fasta sequence [AGCCTCAACGATGAAATCCCTGTTCGTGTTCGCCCTGCTGCTGGTCGCCGTGGCGGCCTACGCGCCCCGCAACAATCAGCGCGTCTTCGGCGGCGACATTGCCACCGCCGGCCAGTTCCCCTACACCGTTGGGCTGATCACGCGCATCAACATTCTGCTGACTGGTCAGTGTGCCGGTTCGCTGGTGTCGGCCAACTTCATCCTTACTGCTGCCCGTTGCGTCTCTGGCATTCAGAGTGCCGTCGCCGTGCTCGGTGGACTGCGCATCAACGAACCCAACGAACCGGGCGCAGT-GCGCATCA-CCGTGACCGACTTCATCATTCA--CCCGCAGTACG-AGGCGGAGCCGGACGTGTTCGACGTTGCTCTGGTGCGCCTGCCGCTCCCGGTGCCGTTCAGCGACAACATTCGCCCAGTGCGCCTGCCCAACCTGCGCCAGGTGGAGGCCACCTTCAACGGCCAGCAGGCAACCGTGACTGGCTGGGGCCGCTTTGGCGAGGGTACGGCCAACTCGGAGGTGCTGCGTTTCGGTCGCTCCCAGGTCATCTCGACGCTGGCCTGCCGGCTCAGCCTGCCGACCAACACGATCCTCGACCAGCACGTGTGCACGGACGGTGCGAACAGCTCGCCGTGCCANGGCGATGTCGGCGCTCCGCTGACGATCGTGGACGCGGACGGC] [+] EMBL BX619139 [AGCCTCAACGATGAAATCCCTGTTCGTGTTCGCCCTGCTGCTGGTCGCCGTGGCGGCCTACGCGCCCCGCAACAATCAGCGCGTCTTCGGCGGCGACATTGCCACCGCCGGCCAGTTCCCCTACACCGTTGGGCTGATCACGCGCATCAACATTCTGCTGACTGGTCAGTGTGCCGGTTCGCTGGTGTCGGCCAACTTCATCCTTACTGCTGCCCGTTGCGTCTCTGGCATTCAGAGTGCCGTCGCCGTGCTCGGTGGACTGCGCATCAACGAACCCAACGAACCGGGCGCAGTGGCGCATCACCCGTGACCGACTTCATCATTCACCCCCGCAGTACGAANGCGGAGC ] [+] EMBL BX628044 [ GTTCGCCCTGCTGCTGGTCGCCGTGGCGGCCTACGCGCCCCGCAACAATCAGCGCGTCTTCGGCGGCGACATTGCCACCGCCGGCCAGTTCCCCTACACCGTTGGGCTGATCACGCGCATCAACATTCTGCTGACTGGTCAGTGTGCCGGTTCGCTGGTGTCGGCCAACTTCATCCTTACTGCTGCCCGTTGCGTCTCTGGCATTCAGAGTGCCGTCGCCGTGCTCGGTGGACTGCGCATCAACGAACCCAACGAACCGGGCGCAGT GCGCATCA CCGTGACCGACTTCATCATTCA CCCGCAGTACG AGGCGGAGCCGGACGTGTTCGACGTTGCTCTGGTGCGCCTGCCGCTCCCGGTGCCGTTCAGCGACAACATTCGCCCAGTGCGCCTGCCCAACCTGCGCCAGGTGGAGGCCACCTTCAACGGCCAGCAGGCAACCGTGACTGGCTGGGGCCGCTTTGGCGAGGGTACGGCCAACTCGGAGGTGCTGCGTTTCGGTCGCTCCCAGGTCATCTCGACGCTGGCCTGCCGGCTCAGCCTGCCGACCAACACGATCCTCGACCAGCACGTGTGCACGGACGGTGCGAACAGCTCGCCGTGCCANGGCGATGTCGGCGCTCCGCTGACGATCGTGGACGCGGACGGC] [+] EMBL BX628452 [ TGGTCGCCGTGGCGGCCTACGCGCCCCGCAACAATCAGCGCGTCTTCGGCGGCGACATTGCCACCGCCGGCCAGTTCCCCTACACCGTTGGGCTGATCACGCGCATCAACATTCTGCTGACTGGTCAGTGTGCCGGTTCGCTGGTGTCGGCCAACTTCATCCTTACTGCTGCCCGTTGCGTCTCTGGCATTCAGAGTGCCGTCGCCGTGCTCGGTGGACTGCGCATCAACGAACCCAACGAACCGGGCGCAGT GCGCATCA CCGTGACCGACTTCATCATTCA CCCGCAGTACG AGGCGGAGCCGGACGTGTTCGACGTTGCTCTGGTGCGCCTGCCGCTCCCGGTGCCGTTCAGCGACAACATTCGCCCAGTGCGCCTGCCCAACCTGCGCCAGGTGGAGGCCACCTTCAACGGCCAGCAGGCAACCGTGACTGGCTGGGGCCGCTTTGGCGAGGGTACGGCCAACTCGGAGGTGCTGCGTTTCGGTCGCTCCCAGGTCATCTCGACGCTGGCCTGCCGGCTCAGCCTGCCGACCAACACGATCCTCGACCAGCACGTGTGCACGGACGGT ] consensusID : consensus_5575#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 560 fasta sequence [AGATCGGCACGAGGNCGCATCAACATTCTGCTGACTGGTCAGTGTGCCGGTTCGCTGGTGTCGGCCAACTTCATCCTTACTGCTGCCCGTTGCGTCTCTGGCATTCAGAGTGCCGTCGCCGTGCTCGGTGGACTGCGCATCAACGAACCCAACGAACCGGGCGCAGTGCGCATCACCGTGACCGACTTCATCATTCACCCGCAGTACGAGGCGGAGCCGGACGTGTTCGACGTTGCTCTGGTGCGCCTGCCGCTCCCGGTGCCGTTCAGCGACAACATTCGCCCAGTGCGCCTGCCCAACCTGCGCCAGGTGGAGGCCACCTTCAACGGCCAGCAGGCAACCGTGACTGGCTGGGGCCGCTTTGGCGAGGGTACAGGCCAACTCGGAGGTGCTGCGTTTCGGGTCGCTCCCAGGTCATCTCGACGCTGGCCTGCCGGCTCAGCCTGCCGANCAACACGATCCTCGACCNAGCACGTGTGCACGGACGGTGCGAACAGCTCGCCGTTGCCAGGGCGATGTCGGCGCTCCGCTGACGATCGTGGACGCGGACGGCATCAGNC] [+] EMBL BX468684 [AGATCGGCACGAGGNCGCATCAACATTCTGCTGACTGGTCAGTGTGCCGGTTCGCTGGTGTCGGCCAACTTCATCCTTACTGCTGCCCGTTGCGTCTCTGGCATTCAGAGTGCCGTCGCCGTGCTCGGTGGACTGCGCATCAACGAACCCAACGAACCGGGCGCAGTGCGCATCACCGTGACCGACTTCATCATTCACCCGCAGTACGAGGCGGAGCCGGACGTGTTCGACGTTGCTCTGGTGCGCCTGCCGCTCCCGGTGCCGTTCAGCGACAACATTCGCCCAGTGCGCCTGCCCAACCTGCGCCAGGTGGAGGCCACCTTCAACGGCCAGCAGGCAACCGTGACTGGCTGGGGCCGCTTTGGCGAGGGTACAGGCCAACTCGGAGGTGCTGCGTTTCGGGTCGCTCCCAGGTCATCTCGACGCTGGCCTGCCGGCTCAGCCTGCCGANCAACACGATCCTCGACCNAGCACGTGTGCACGGACGGTGCGAACAGCTCGCCGTTGCCAGGGCGATGTCGGCGCTCCGCTGACGATCGTGGACGCGGACGGCATCAGNC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5575#0 AGCCTCAACGATGAAATCCCTGTTCGTGTTCGCCCTGCTGCTGGTCGCCGTGGCGGCCTA 60 consensus_5575#1 ------------------------------------------------------------ consensus_5575#0 CGCGCCCCGCAACAATCAGCGCGTCTTCGGCGGCGACATTGCCACCGCCGGCCAGTTCCC 120 consensus_5575#1 ------------------------------------------------------------ consensus_5575#0 CTACACCGTTGGGCTGATCACGCGCATCAACATTCTGCTGACTGGTCAGTGTGCCGGTTC 180 consensus_5575#1 -----AGATCGGCACGA--GGNCGCATCAACATTCTGCTGACTGGTCAGTGTGCCGGTTC 53 * ** ** ************************************** consensus_5575#0 GCTGGTGTCGGCCAACTTCATCCTTACTGCTGCCCGTTGCGTCTCTGGCATTCAGAGTGC 240 consensus_5575#1 GCTGGTGTCGGCCAACTTCATCCTTACTGCTGCCCGTTGCGTCTCTGGCATTCAGAGTGC 113 ************************************************************ consensus_5575#0 CGTCGCCGTGCTCGGTGGACTGCGCATCAACGAACCCAACGAACCGGGCGCAGTGCGCAT 300 consensus_5575#1 CGTCGCCGTGCTCGGTGGACTGCGCATCAACGAACCCAACGAACCGGGCGCAGTGCGCAT 173 ************************************************************ consensus_5575#0 CACCGTGACCGACTTCATCATTCACCCGCAGTACGAGGCGGAGCCGGACGTGTTCGACGT 360 consensus_5575#1 CACCGTGACCGACTTCATCATTCACCCGCAGTACGAGGCGGAGCCGGACGTGTTCGACGT 233 ************************************************************ consensus_5575#0 TGCTCTGGTGCGCCTGCCGCTCCCGGTGCCGTTCAGCGACAACATTCGCCCAGTGCGCCT 420 consensus_5575#1 TGCTCTGGTGCGCCTGCCGCTCCCGGTGCCGTTCAGCGACAACATTCGCCCAGTGCGCCT 293 ************************************************************ consensus_5575#0 GCCCAACCTGCGCCAGGTGGAGGCCACCTTCAACGGCCAGCAGGCAACCGTGACTGGCTG 480 consensus_5575#1 GCCCAACCTGCGCCAGGTGGAGGCCACCTTCAACGGCCAGCAGGCAACCGTGACTGGCTG 353 ************************************************************ consensus_5575#0 GGGCCGCTTTGGCGAGGGTAC-GGCCAACTCGGAGGTGCTGCGTTTCGG-TCGCTCCCAG 538 consensus_5575#1 GGGCCGCTTTGGCGAGGGTACAGGCCAACTCGGAGGTGCTGCGTTTCGGGTCGCTCCCAG 413 ********************* *************************** ********** consensus_5575#0 GTCATCTCGACGCTGGCCTGCCGGCTCAGCCTGCCGACCAACACGATCCTCGACCA-GCA 597 consensus_5575#1 GTCATCTCGACGCTGGCCTGCCGGCTCAGCCTGCCGANCAACACGATCCTCGACCNAGCA 473 ************************************* ***************** *** consensus_5575#0 CGTGTGCACGGACGGTGCGAACAGCTCGCCGT-GCCANGGCGATGTCGGCGCTCCGCTGA 656 consensus_5575#1 CGTGTGCACGGACGGTGCGAACAGCTCGCCGTTGCCAGGGCGATGTCGGCGCTCCGCTGA 533 ******************************** **** ********************** consensus_5575#0 CGATCGTGGACGCGGACGGC------- 676 consensus_5575#1 CGATCGTGGACGCGGACGGCATCAGNC 560 ******************** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||