Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 5575 cluster # 5575       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5575#0 length = 676 sequences # 3  
consensus_5575#1 length = 560 sequences # 1  

consensusID : consensus_5575#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 676
fasta sequence
                              [AGCCTCAACGATGAAATCCCTGTTCGTGTTCGCCCTGCTGCTGGTCGCCGTGGCGGCCTACGCGCCCCGCAACAATCAGCGCGTCTTCGGCGGCGACATTGCCACCGCCGGCCAGTTCCCCTACACCGTTGGGCTGATCACGCGCATCAACATTCTGCTGACTGGTCAGTGTGCCGGTTCGCTGGTGTCGGCCAACTTCATCCTTACTGCTGCCCGTTGCGTCTCTGGCATTCAGAGTGCCGTCGCCGTGCTCGGTGGACTGCGCATCAACGAACCCAACGAACCGGGCGCAGT-GCGCATCA-CCGTGACCGACTTCATCATTCA--CCCGCAGTACG-AGGCGGAGCCGGACGTGTTCGACGTTGCTCTGGTGCGCCTGCCGCTCCCGGTGCCGTTCAGCGACAACATTCGCCCAGTGCGCCTGCCCAACCTGCGCCAGGTGGAGGCCACCTTCAACGGCCAGCAGGCAACCGTGACTGGCTGGGGCCGCTTTGGCGAGGGTACGGCCAACTCGGAGGTGCTGCGTTTCGGTCGCTCCCAGGTCATCTCGACGCTGGCCTGCCGGCTCAGCCTGCCGACCAACACGATCCTCGACCAGCACGTGTGCACGGACGGTGCGAACAGCTCGCCGTGCCANGGCGATGTCGGCGCTCCGCTGACGATCGTGGACGCGGACGGC]

[+] EMBL BX619139             [AGCCTCAACGATGAAATCCCTGTTCGTGTTCGCCCTGCTGCTGGTCGCCGTGGCGGCCTACGCGCCCCGCAACAATCAGCGCGTCTTCGGCGGCGACATTGCCACCGCCGGCCAGTTCCCCTACACCGTTGGGCTGATCACGCGCATCAACATTCTGCTGACTGGTCAGTGTGCCGGTTCGCTGGTGTCGGCCAACTTCATCCTTACTGCTGCCCGTTGCGTCTCTGGCATTCAGAGTGCCGTCGCCGTGCTCGGTGGACTGCGCATCAACGAACCCAACGAACCGGGCGCAGTGGCGCATCACCCGTGACCGACTTCATCATTCACCCCCGCAGTACGAANGCGGAGC                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL BX628044             [                           GTTCGCCCTGCTGCTGGTCGCCGTGGCGGCCTACGCGCCCCGCAACAATCAGCGCGTCTTCGGCGGCGACATTGCCACCGCCGGCCAGTTCCCCTACACCGTTGGGCTGATCACGCGCATCAACATTCTGCTGACTGGTCAGTGTGCCGGTTCGCTGGTGTCGGCCAACTTCATCCTTACTGCTGCCCGTTGCGTCTCTGGCATTCAGAGTGCCGTCGCCGTGCTCGGTGGACTGCGCATCAACGAACCCAACGAACCGGGCGCAGT GCGCATCA CCGTGACCGACTTCATCATTCA  CCCGCAGTACG AGGCGGAGCCGGACGTGTTCGACGTTGCTCTGGTGCGCCTGCCGCTCCCGGTGCCGTTCAGCGACAACATTCGCCCAGTGCGCCTGCCCAACCTGCGCCAGGTGGAGGCCACCTTCAACGGCCAGCAGGCAACCGTGACTGGCTGGGGCCGCTTTGGCGAGGGTACGGCCAACTCGGAGGTGCTGCGTTTCGGTCGCTCCCAGGTCATCTCGACGCTGGCCTGCCGGCTCAGCCTGCCGACCAACACGATCCTCGACCAGCACGTGTGCACGGACGGTGCGAACAGCTCGCCGTGCCANGGCGATGTCGGCGCTCCGCTGACGATCGTGGACGCGGACGGC]
[+] EMBL BX628452             [                                         TGGTCGCCGTGGCGGCCTACGCGCCCCGCAACAATCAGCGCGTCTTCGGCGGCGACATTGCCACCGCCGGCCAGTTCCCCTACACCGTTGGGCTGATCACGCGCATCAACATTCTGCTGACTGGTCAGTGTGCCGGTTCGCTGGTGTCGGCCAACTTCATCCTTACTGCTGCCCGTTGCGTCTCTGGCATTCAGAGTGCCGTCGCCGTGCTCGGTGGACTGCGCATCAACGAACCCAACGAACCGGGCGCAGT GCGCATCA CCGTGACCGACTTCATCATTCA  CCCGCAGTACG AGGCGGAGCCGGACGTGTTCGACGTTGCTCTGGTGCGCCTGCCGCTCCCGGTGCCGTTCAGCGACAACATTCGCCCAGTGCGCCTGCCCAACCTGCGCCAGGTGGAGGCCACCTTCAACGGCCAGCAGGCAACCGTGACTGGCTGGGGCCGCTTTGGCGAGGGTACGGCCAACTCGGAGGTGCTGCGTTTCGGTCGCTCCCAGGTCATCTCGACGCTGGCCTGCCGGCTCAGCCTGCCGACCAACACGATCCTCGACCAGCACGTGTGCACGGACGGT                                                               ]


>consensus_5575#0 AGCCTCAACGATGAAATCCCTGTTCGTGTTCGCCCTGCTGCTGGTCGCCGTGGCGGCCTA CGCGCCCCGCAACAATCAGCGCGTCTTCGGCGGCGACATTGCCACCGCCGGCCAGTTCCC CTACACCGTTGGGCTGATCACGCGCATCAACATTCTGCTGACTGGTCAGTGTGCCGGTTC GCTGGTGTCGGCCAACTTCATCCTTACTGCTGCCCGTTGCGTCTCTGGCATTCAGAGTGC CGTCGCCGTGCTCGGTGGACTGCGCATCAACGAACCCAACGAACCGGGCGCAGTGCGCAT CACCGTGACCGACTTCATCATTCACCCGCAGTACGAGGCGGAGCCGGACGTGTTCGACGT TGCTCTGGTGCGCCTGCCGCTCCCGGTGCCGTTCAGCGACAACATTCGCCCAGTGCGCCT GCCCAACCTGCGCCAGGTGGAGGCCACCTTCAACGGCCAGCAGGCAACCGTGACTGGCTG GGGCCGCTTTGGCGAGGGTACGGCCAACTCGGAGGTGCTGCGTTTCGGTCGCTCCCAGGT CATCTCGACGCTGGCCTGCCGGCTCAGCCTGCCGACCAACACGATCCTCGACCAGCACGT GTGCACGGACGGTGCGAACAGCTCGCCGTGCCANGGCGATGTCGGCGCTCCGCTGACGAT CGTGGACGCGGACGGC



consensusID : consensus_5575#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 560
fasta sequence
                              [AGATCGGCACGAGGNCGCATCAACATTCTGCTGACTGGTCAGTGTGCCGGTTCGCTGGTGTCGGCCAACTTCATCCTTACTGCTGCCCGTTGCGTCTCTGGCATTCAGAGTGCCGTCGCCGTGCTCGGTGGACTGCGCATCAACGAACCCAACGAACCGGGCGCAGTGCGCATCACCGTGACCGACTTCATCATTCACCCGCAGTACGAGGCGGAGCCGGACGTGTTCGACGTTGCTCTGGTGCGCCTGCCGCTCCCGGTGCCGTTCAGCGACAACATTCGCCCAGTGCGCCTGCCCAACCTGCGCCAGGTGGAGGCCACCTTCAACGGCCAGCAGGCAACCGTGACTGGCTGGGGCCGCTTTGGCGAGGGTACAGGCCAACTCGGAGGTGCTGCGTTTCGGGTCGCTCCCAGGTCATCTCGACGCTGGCCTGCCGGCTCAGCCTGCCGANCAACACGATCCTCGACCNAGCACGTGTGCACGGACGGTGCGAACAGCTCGCCGTTGCCAGGGCGATGTCGGCGCTCCGCTGACGATCGTGGACGCGGACGGCATCAGNC]

[+] EMBL BX468684             [AGATCGGCACGAGGNCGCATCAACATTCTGCTGACTGGTCAGTGTGCCGGTTCGCTGGTGTCGGCCAACTTCATCCTTACTGCTGCCCGTTGCGTCTCTGGCATTCAGAGTGCCGTCGCCGTGCTCGGTGGACTGCGCATCAACGAACCCAACGAACCGGGCGCAGTGCGCATCACCGTGACCGACTTCATCATTCACCCGCAGTACGAGGCGGAGCCGGACGTGTTCGACGTTGCTCTGGTGCGCCTGCCGCTCCCGGTGCCGTTCAGCGACAACATTCGCCCAGTGCGCCTGCCCAACCTGCGCCAGGTGGAGGCCACCTTCAACGGCCAGCAGGCAACCGTGACTGGCTGGGGCCGCTTTGGCGAGGGTACAGGCCAACTCGGAGGTGCTGCGTTTCGGGTCGCTCCCAGGTCATCTCGACGCTGGCCTGCCGGCTCAGCCTGCCGANCAACACGATCCTCGACCNAGCACGTGTGCACGGACGGTGCGAACAGCTCGCCGTTGCCAGGGCGATGTCGGCGCTCCGCTGACGATCGTGGACGCGGACGGCATCAGNC]


>consensus_5575#1 AGATCGGCACGAGGNCGCATCAACATTCTGCTGACTGGTCAGTGTGCCGGTTCGCTGGTG TCGGCCAACTTCATCCTTACTGCTGCCCGTTGCGTCTCTGGCATTCAGAGTGCCGTCGCC GTGCTCGGTGGACTGCGCATCAACGAACCCAACGAACCGGGCGCAGTGCGCATCACCGTG ACCGACTTCATCATTCACCCGCAGTACGAGGCGGAGCCGGACGTGTTCGACGTTGCTCTG GTGCGCCTGCCGCTCCCGGTGCCGTTCAGCGACAACATTCGCCCAGTGCGCCTGCCCAAC CTGCGCCAGGTGGAGGCCACCTTCAACGGCCAGCAGGCAACCGTGACTGGCTGGGGCCGC TTTGGCGAGGGTACAGGCCAACTCGGAGGTGCTGCGTTTCGGGTCGCTCCCAGGTCATCT CGACGCTGGCCTGCCGGCTCAGCCTGCCGANCAACACGATCCTCGACCNAGCACGTGTGC ACGGACGGTGCGAACAGCTCGCCGTTGCCAGGGCGATGTCGGCGCTCCGCTGACGATCGT GGACGCGGACGGCATCAGNC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5575#0      AGCCTCAACGATGAAATCCCTGTTCGTGTTCGCCCTGCTGCTGGTCGCCGTGGCGGCCTA 60
consensus_5575#1      ------------------------------------------------------------
                                                                                  

consensus_5575#0      CGCGCCCCGCAACAATCAGCGCGTCTTCGGCGGCGACATTGCCACCGCCGGCCAGTTCCC 120
consensus_5575#1      ------------------------------------------------------------
                                                                                  

consensus_5575#0      CTACACCGTTGGGCTGATCACGCGCATCAACATTCTGCTGACTGGTCAGTGTGCCGGTTC 180
consensus_5575#1      -----AGATCGGCACGA--GGNCGCATCAACATTCTGCTGACTGGTCAGTGTGCCGGTTC 53
                              * **   **     **************************************

consensus_5575#0      GCTGGTGTCGGCCAACTTCATCCTTACTGCTGCCCGTTGCGTCTCTGGCATTCAGAGTGC 240
consensus_5575#1      GCTGGTGTCGGCCAACTTCATCCTTACTGCTGCCCGTTGCGTCTCTGGCATTCAGAGTGC 113
                      ************************************************************

consensus_5575#0      CGTCGCCGTGCTCGGTGGACTGCGCATCAACGAACCCAACGAACCGGGCGCAGTGCGCAT 300
consensus_5575#1      CGTCGCCGTGCTCGGTGGACTGCGCATCAACGAACCCAACGAACCGGGCGCAGTGCGCAT 173
                      ************************************************************

consensus_5575#0      CACCGTGACCGACTTCATCATTCACCCGCAGTACGAGGCGGAGCCGGACGTGTTCGACGT 360
consensus_5575#1      CACCGTGACCGACTTCATCATTCACCCGCAGTACGAGGCGGAGCCGGACGTGTTCGACGT 233
                      ************************************************************

consensus_5575#0      TGCTCTGGTGCGCCTGCCGCTCCCGGTGCCGTTCAGCGACAACATTCGCCCAGTGCGCCT 420
consensus_5575#1      TGCTCTGGTGCGCCTGCCGCTCCCGGTGCCGTTCAGCGACAACATTCGCCCAGTGCGCCT 293
                      ************************************************************

consensus_5575#0      GCCCAACCTGCGCCAGGTGGAGGCCACCTTCAACGGCCAGCAGGCAACCGTGACTGGCTG 480
consensus_5575#1      GCCCAACCTGCGCCAGGTGGAGGCCACCTTCAACGGCCAGCAGGCAACCGTGACTGGCTG 353
                      ************************************************************

consensus_5575#0      GGGCCGCTTTGGCGAGGGTAC-GGCCAACTCGGAGGTGCTGCGTTTCGG-TCGCTCCCAG 538
consensus_5575#1      GGGCCGCTTTGGCGAGGGTACAGGCCAACTCGGAGGTGCTGCGTTTCGGGTCGCTCCCAG 413
                      ********************* *************************** **********

consensus_5575#0      GTCATCTCGACGCTGGCCTGCCGGCTCAGCCTGCCGACCAACACGATCCTCGACCA-GCA 597
consensus_5575#1      GTCATCTCGACGCTGGCCTGCCGGCTCAGCCTGCCGANCAACACGATCCTCGACCNAGCA 473
                      ************************************* *****************  ***

consensus_5575#0      CGTGTGCACGGACGGTGCGAACAGCTCGCCGT-GCCANGGCGATGTCGGCGCTCCGCTGA 656
consensus_5575#1      CGTGTGCACGGACGGTGCGAACAGCTCGCCGTTGCCAGGGCGATGTCGGCGCTCCGCTGA 533
                      ******************************** **** **********************

consensus_5575#0      CGATCGTGGACGCGGACGGC------- 676
consensus_5575#1      CGATCGTGGACGCGGACGGCATCAGNC 560
                      ********************       




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)