These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5596#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 954 fasta sequence [CCG-ACGGAACACTATTCCGGTACACGGTCTCGTGCGCCCACCTTTTCAATGGACAGGATCGTTTGCGACAGTGGTGTAGTACATTTAGCCAGACCCGCTGCAATACCTTGTCGAGACCTTCGCATTAGTCACTCGGTGGTTGTTCGCGTCTTCGTGTCGCCATCGTACCACATTGTCTGTGGCCTACACTGTTGATCGGTACGCCAGGGTCATTGGGCTTCGGCAGACGGCAGCGTGGTTCAGGCATTCGGGGCACCAACACCTGTCACCACGGGCTTCATTCCAAGATGGGCTGCAGTTCGTCAAAGGCGGTTCGCAATTCGAACGAATCCCTCGACAAAGCATCCAAGGTTACGGCGGCTACGTCCATGAGCAATGGAGGGGCAGCAGGCACGCACGATGACGATTTCATCGAAGCCGTCGTGTGCCAGGAGTCGGAGATTGGTGAGAACCAGATGAAGCAGGTCGAGTTGGGCGAGGGCAAGGTGCTGCTGGTACGGCAGAACGGGAAGCTTTCGGCCATCGGCAACAAATGCTCCCACTACGGTGCCATGCTCGTGACCGGTGCGCTGGGCGAAGGACGCGTCCGGTGCCCTTGGCATGGAGCGTGCTTCAACGTGGAGACGGGCGATATCGAAGACTTCCCGGGGATGGATTCGCTGCCCTGCTACCGCGTCACCGTTGGCGAGGCGGGTGAAGTGAAAAGTGCGCGCCAAGCGCACCGAACTGGCCACCAACAAGCGGACGCGTGTAATGGCCAGACGGGCGGCGCAGGACGACCGCACGTACGTCGTCATCGGTGGAGGTCCGTCGGGAGCGACTTGTGCGGAAACGCTGCGACAGGAAGGATTCACCGGGCGGATAGTGATGATCAACAAGGAACCATGCCTACCGTACGACCGGGTGAAGGTGAGCAAAACGATGGACCTGAATCTGGAAAAGGTCCTGCTGCGG] [+] EMBL BM608838 [CCG ACGGAACACTATTCCGGTACACGGTCTCGTGCGCCCACCTTTTCAATGGACAGGATCGTTTGCGACAGTGGTGTAGTACATTTAGCCAGACCCGCTGCAATACCTTGTCGAGACCTTCGCATTAGTCACTCGGTGGTTGTTCGCGTCTTCGTGTCGCCATCGTACCACATTGTCTGTGGCCTACACTGTTGATCGGTACGCCAGGGTCATTGGGCTTCGGCAGACGGCAGCGTGGTTCAGGCATTCGGGGCACCAACACCTGTCACCACGGGCTTCATTCCAAGATGGGCTGCAGTTCGTCAAAGGCGGTTCGCAATTCGAACGAATCCCTCGACAAAGCATCCAAGGTTACGGCGGCTACGTCCATGAGCAATGGAGGGGCAGCAGGCACGCACGATGACGATTTCATCGAAGCCGTCGTGTGCCAGGAGTCGGAGATTGGTGAGAACCAGATGAAGCAGGTCGAGTTGGGCGAGGGCAAGGTGCTGCTGGTACGGCAGAACGGGAAGCTTTCGGCCATCGGCAACAAATGCTCCCACTACGGTGCCATGCTCGTGACCGGTGCGCTGGGCGAAGGACGCGTCCGGTGCCCTTGGCATGGAGCGTGCTTCAACGTGGAGACGGGCGATATCGAAGACTTCCCGGGGATGGATTCGCTGCCCTGCTACCGCGTCACCGTTGGCGAGGCGGGTGAAGTGAAAAGTGCG ] [+] EMBL BM645489 [CCGCACGGAACACTATTCCGGTACACGGTCTCGTGCGCCTACCTTTTCAATGGACAGGATCGTTTGCGACAGTGGTGTAGTACATTTAGCCAGACCCGCTGCAATACCTTGTCGAGACCTTCGCATTAGTCACTCGGTGGTTGTTCGCGTCTTCGTGTCGCCATCGTACCACATTGTCTGTGGCCTACACTGTTGATCGGTACGCCAGGGTCATTGGGCTTCGGCAGACGGCAGCGTGGTTCAGGCATTCGGGGCACCAACACCTGTCACCACGGGCTTCATTCCAAGATGGGCTGCAGTTCGTCAAAGGCGGTTCGCAATTCGAACGAATCCCTCGACAAAGCATCCAAGGTTACGGCGGCTACGTCCATGAGCAATGGAGGGGCAGCAGGCACGCACGATGACGATTTCATCGAAGCCGTCGTGTGCCAGGAGTCGGAGATTGGTGAGAACCAGATGAAGCAGGTCGAGTTGGGCGAGGGCAAGGTGCTGCTGGTACGGCAGAACGGGAAGCTTTCGGCCATCGGCAACAAATGCTCCCACTACGGTGCCATGCTCGTGACCGGTGCGCTGGGCGAAGGACGCGTCCGGTGCCCTTGGC ] [+] EMBL BM584990 [ ccgGCAGTTCGTCAAAGGCGGTTCGCAATTCGAACGAATCCCTCGACAAAGCATCCAAGGTTACGGCGGCTACGTCCATGAGCAATGGAGGGGCAGCAGGCACGCACGATGACGATTTCATCGAAGCCGTCGTGTGCCAGGAGTCGGAGATTGGTGAGAACCAGATGAAGCAGGTCGAGTTGGGCGAGGGCAAGGTGCTGCTGGTACGGCAGAACGGGAAGCTTTCGGCCATCGGCAACAAATGCTCCCACTACGGTGCCATGCTCGTGACCGGTGCGCTGGGCGAAGGACGCGTCCGGTGCCCTTGGCATGGAGCGTGCTTCAACGTGGAGACGGGCGATATCGAAGACTTCCCGGGGATGGATTCGCTCCCCTGCTACCGCGTCACCGTTGGCGAGGCGGGTGAGGTG AAAGTGCGCGCCAAGCGCACCGAACTGGCCACCAACAAGCGGACGCGTGTAATGGCCAGACGGGCGGCGCAGGACGACCGCACGTACGTCGTCATCGGTGGAGGTCCGTCGGGAGCGACTTGTGCGGAAACGCTGCGACAGGAAGGATTCACCGGGCGGATAGTGATGATCAACAAGGAACCATGCCTACCGTACGACCGGGTGAAGGTGAGCAAAACGATGGACCTGAATCTGGAAAAGGTCCTGCTGCGG] consensusID : consensus_5596#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 519 fasta sequence [CGACCCACGCGTCCGCGTCACAAGATGATGTCGTATCTCGCATCCAAGGTTACGGCGGCTACGTCCATGAGCAATGGAGGGGCAGCAGGCACGCACGATGACGATTTCATCGAAGCCGTCGTGTGCCAGGAGTCGGAGATTGGCGAGAACCAGATGAAGCAGGTCGAGTTGGGCGAGGGCAAGGTGCTGCTGGTACGGCAGAACGGGAAGCTTTCGGCCATCGGCAACAAATGCTCCCACTACGGTGCCATGCTCGTGACCGGTGCGCTGGGCGAAGGACGCGTCCGGTGCCCTTGGCATGGAGCGTGCTTCAACGTGGAGACGGGCGATATCGAAGACTTCCCGGGGATGGATTCGCTGCCCTGCTACCGCGTCACCGTTGGCGAGGCGGGTGAGGTGAAAGTGCGCGCCAAGCGCACCGAACTGGCCACCAACAAGCGGACGCGCGTAATGGCCAGACGGGCGGCGCAGGACGACCGCACGTACGTCGTCATCGGTGGCGGCCCGTCGGGAGCGACG] [+] EMBL BM629643 [CGACCCACGCGTCCGCGTCACAAGATGATGTCGTATCTCGCATCCAAGGTTACGGCGGCTACGTCCATGAGCAATGGAGGGGCAGCAGGCACGCACGATGACGATTTCATCGAAGCCGTCGTGTGCCAGGAGTCGGAGATTGGCGAGAACCAGATGAAGCAGGTCGAGTTGGGCGAGGGCAAGGTGCTGCTGGTACGGCAGAACGGGAAGCTTTCGGCCATCGGCAACAAATGCTCCCACTACGGTGCCATGCTCGTGACCGGTGCGCTGGGCGAAGGACGCGTCCGGTGCCCTTGGCATGGAGCGTGCTTCAACGTGGAGACGGGCGATATCGAAGACTTCCCGGGGATGGATTCGCTGCCCTGCTACCGCGTCACCGTTGGCGAGGCGGGTGAGGTGAAAGTGCGCGCCAAGCGCACCGAACTGGCCACCAACAAGCGGACGCGCGTAATGGCCAGACGGGCGGCGCAGGACGACCGCACGTACGTCGTCATCGGTGGCGGCCCGTCGGGAGCGACG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5596#0 CCGACGGAACACTATTCCGGTACACGGTCTCGTGCGCCCACCTTTTCAATGGACAGGATC 60 consensus_5596#1 ------------------------------------------------------------ consensus_5596#0 GTTTGCGACAGTGGTGTAGTACATTTAGCCAGACCCGCTGCAATACCTTGTCGAGACCTT 120 consensus_5596#1 ------------------------------------------------------------ consensus_5596#0 CGCATTAGTCACTCGGTGGTTGTTCGCGTCTTCGTGTCGCCATCGTACCACATTGTCTGT 180 consensus_5596#1 ------------------------------------------------------------ consensus_5596#0 GGCCTACACTGTTGATCGGTACGCCAGGGTCATTGGGCTTCGGCAGACGGCAGCGTGGTT 240 consensus_5596#1 ------------------------------------------------------------ consensus_5596#0 CAGGCATTCGGGGCACCAACACCTGTCACCACGGGCTTCATTCCAAGATGGGCTGCAGTT 300 consensus_5596#1 ------------------------------------------------------------ consensus_5596#0 CGTCAAAGGCGGTTCGCAATTCGAACGAATCCCTCGACAAAGCATCCAAGGTTACGGCGG 360 consensus_5596#1 CGACCCACGCG-TCCGCGTCACAAGATGATGTCGTATCTC-GCATCCAAGGTTACGGCGG 58 ** * * *** * *** * * ** * * ******************* consensus_5596#0 CTACGTCCATGAGCAATGGAGGGGCAGCAGGCACGCACGATGACGATTTCATCGAAGCCG 420 consensus_5596#1 CTACGTCCATGAGCAATGGAGGGGCAGCAGGCACGCACGATGACGATTTCATCGAAGCCG 118 ************************************************************ consensus_5596#0 TCGTGTGCCAGGAGTCGGAGATTGGTGAGAACCAGATGAAGCAGGTCGAGTTGGGCGAGG 480 consensus_5596#1 TCGTGTGCCAGGAGTCGGAGATTGGCGAGAACCAGATGAAGCAGGTCGAGTTGGGCGAGG 178 ************************* ********************************** consensus_5596#0 GCAAGGTGCTGCTGGTACGGCAGAACGGGAAGCTTTCGGCCATCGGCAACAAATGCTCCC 540 consensus_5596#1 GCAAGGTGCTGCTGGTACGGCAGAACGGGAAGCTTTCGGCCATCGGCAACAAATGCTCCC 238 ************************************************************ consensus_5596#0 ACTACGGTGCCATGCTCGTGACCGGTGCGCTGGGCGAAGGACGCGTCCGGTGCCCTTGGC 600 consensus_5596#1 ACTACGGTGCCATGCTCGTGACCGGTGCGCTGGGCGAAGGACGCGTCCGGTGCCCTTGGC 298 ************************************************************ consensus_5596#0 ATGGAGCGTGCTTCAACGTGGAGACGGGCGATATCGAAGACTTCCCGGGGATGGATTCGC 660 consensus_5596#1 ATGGAGCGTGCTTCAACGTGGAGACGGGCGATATCGAAGACTTCCCGGGGATGGATTCGC 358 ************************************************************ consensus_5596#0 TGCCCTGCTACCGCGTCACCGTTGGCGAGGCGGGTGAAGTGAAAAGTGCGCGCCAAGCGC 720 consensus_5596#1 TGCCCTGCTACCGCGTCACCGTTGGCGAGGCGGGTGAGGTGAAA-GTGCGCGCCAAGCGC 417 ************************************* ****** *************** consensus_5596#0 ACCGAACTGGCCACCAACAAGCGGACGCGTGTAATGGCCAGACGGGCGGCGCAGGACGAC 780 consensus_5596#1 ACCGAACTGGCCACCAACAAGCGGACGCGCGTAATGGCCAGACGGGCGGCGCAGGACGAC 477 ***************************** ****************************** consensus_5596#0 CGCACGTACGTCGTCATCGGTGGAGGTCCGTCGGGAGCGACTTGTGCGGAAACGCTGCGA 840 consensus_5596#1 CGCACGTACGTCGTCATCGGTGGCGGCCCGTCGGGAGCGACG------------------ 519 *********************** ** ************** consensus_5596#0 CAGGAAGGATTCACCGGGCGGATAGTGATGATCAACAAGGAACCATGCCTACCGTACGAC 900 consensus_5596#1 ------------------------------------------------------------ consensus_5596#0 CGGGTGAAGGTGAGCAAAACGATGGACCTGAATCTGGAAAAGGTCCTGCTGCGG 954 consensus_5596#1 ------------------------------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||