These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5597#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 808 fasta sequence [AAATCGTATCCTGAGAATTGTAACATACACATACACACACAAACACATTTTATACAAGACCATTAGCGTGGTAGTACGGATTTGGTTGATTGTCTCTCTGTACGATCTACCCCTTGCTCTCTTGCTTGCTTCCTCCCTATGTGTTTTCCCGTCTTGGTATCTCTCTCTCTCTCTCTCGCGCGCGCTGTCGATCTGTTTGTATACTTTGCAAGGGTTACTTTGCTTTATCGCTCAGTACTTCTTTACGGTGTTAGGCACCACTTACTCGCGGTATCGTTAATTGACCTTTTTCCCAGGCGCAAGGTGCTTCGCAATTATGGAATGCAAGCCATTTAATGATTATTTAATCGAGCGGCAAACCAACAATGCATATAGTTTGTCACAACACACACACTGTTAAAAAGCTTACTAATAATGATAAAACTTTTGAGCGGAAGGTTAAAGCGGCCACCGTTCTCGACGCGCTTAAAAACACGCAAAAGCCTGAGGAGCACCAGCATCATCCCCACCAGCCCCCTCCCCTTGAAAAGGGTTGTTAAAAGACGACAAATGGAAAAGAATACATATTTTTTATGATAAATTATATAAAACCATATACATATACATACACAGATATCTTTACATATACAGTACGAAAGAGTAATAATTAACACCGTAGGTAAGAAGAAGCATGGTTTAGGCGGCAGGTGCAGCAGTAGAAGACGAGTGTGCATATAAGAAAGGATAAATAGAATAAATAATTCGACCGTAGAANGTCAGAGATCGGATCATATGAGTCGCCCCGGCATCATCTCAAGCACTATATCTG] [+] EMBL BX625629 [AAATCGTATCCTGAGAATTGTAACATACACATACACACACAAACACATTTTATACAAGACCATTAGCGTGGTAGTACGGATTTGGTTGATTGTCTCTCTGTACGATCTACCCCTTGCTCTCTTGCTTGCTTCCTCCCTATGTGTTTTCCCGTCTTGGTATCTCTCTCTCTCTCTCTCGCGCGCGCTGTCGATCTGTTTGTATACTTTGCAAGGGTTACTTTGCTTTATCGCTCAGTACTTCTTTACGGTGTTAGGCACCACTTACTCGCGGTATCGTTAATTGACCTTTTTCCCAGGCGCAAGGTGCTTCGCAATTATGGAATGCAAGCCATTTAATGATTATTTAATCGAGCGGCAAACCAACAATGCATATAGTTTGTCACAACACACACACTGTTAAAAAGCTTACTAATAATGATAAAACTTTTGAGCGGAAGGTTAAAGCGGCCACCGTTCTCGACGCGCTTAAAAACACGCAAAAGCCTGAGGAGCACCAGCATCATCCCCACCAGCCCCCTCCCCTTGAAAAGGGTTGTTAAAAGACGACAAATGGAAAAGAATACATATTTTTTATGATAAATTATATAAAACCATATACATATACATACACAGATATCTTTACATATACAGTACGAAAGAGTAATAATTAACACCGTAGGTAAGAAGAAGCATGGTTTAGGCGGCAGGTGCAGCAGTAGAAGACGAGTGTGCATATAAGAAAGGATAAATAGAATAAATAATTCGACCGTAGAANGTCAGAGATCGGATCATATGAGTCGCCCCGGCATCATCTCAAGCACTATATCTG] consensusID : consensus_5597#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 801 fasta sequence [GTGTCGCGATCACGACACGCAGCAGGGCATTCGCTCCGTTAATTCTCGATACTAGTAGTAGCAGTGAATAGAAGTTAGTTTAGGACCTGTCCACACACACACACGCCGGTTTGGTTGGACCCTCTCCCCATAAAATACATACATATTTCGCTTTTTAGTTTTGGTTCAGCTACTGCTGAAGTGAGCACCCAGAAGCTGTTAAAATGTGTGTGTTCTTCTTGTGCAAACCGTTCGTGGCGATCGTGCTCAGGTGAGAAGGTAAATGAGAATTCAATTGAGAAGTAGAATGAGCAAAACGAGGGAGAATTGTGTGGAACTATTGTTTTAGTTCATTTCTCAAACAACTACATACAGTCAAAGACACACACACTTCAGATACACTTACACATACTCACGCACGCACATTGCCGAACGGTTTCTGTTACGTCTACCTGTATTATATTTCAACGCTATCTTATCACGATTATTTAGATAGCCGCTAAGTTAGTTAGTTAGTTAGGTTATGATCGCAAGCTATGCATAATGGTGAATCAAAACAGAAATAAATCGTATCCTGAGAATTGTAACATACACACATACACACACAAACACATTTTATACAAGACCATTAGCGTGGTAGTACGGATTTTGGTCGATTTGTCTGTATACTTTGCAAGGGTTACTTTGCTTTATCGCTCAGTACTTGTTTATGGTGTTAGGCACCACTTACTCGCGGTATCGTTAATTGACCTTTTTCCCAGGCGCAAGGNGCTTCGCAATTATGGAATGCAAGCCATTTATGATTATTTAATCGAGCGGCAA] [+] EMBL BX622137 [GTGTCGCGATCACGACACGCAGCAGGGCATTCGCTCCGTTAATTCTCGATACTAGTAGTAGCAGTGAATAGAAGTTAGTTTAGGACCTGTCCACACACACACACGCCGGTTTGGTTGGACCCTCTCCCCATAAAATACATACATATTTCGCTTTTTAGTTTTGGTTCAGCTACTGCTGAAGTGAGCACCCAGAAGCTGTTAAAATGTGTGTGTTCTTCTTGTGCAAACCGTTCGTGGCGATCGTGCTCAGGTGAGAAGGTAAATGAGAATTCAATTGAGAAGTAGAATGAGCAAAACGAGGGAGAATTGTGTGGAACTATTGTTTTAGTTCATTTCTCAAACAACTACATACAGTCAAAGACACACACACTTCAGATACACTTACACATACTCACGCACGCACATTGCCGAACGGTTTCTGTTACGTCTACCTGTATTATATTTCAACGCTATCTTATCACGATTATTTAGATAGCCGCTAAGTTAGTTAGTTAGTTAGGTTATGATCGCAAGCTATGCATAATGGTGAATCAAAACAGAAATAAATCGTATCCTGAGAATTGTAACATACACACATACACACACAAACACATTTTATACAAGACCATTAGCGTGGTAGTACGGATTTTGGTCGATTTGTCTGTATACTTTGCAAGGGTTACTTTGCTTTATCGCTCAGTACTTGTTTATGGTGTTAGGCACCACTTACTCGCGGTATCGTTAATTGACCTTTTTCCCAGGCGCAAGGNGCTTCGCAATTATGGAATGCAAGCCATTTATGATTATTTAATCGAGCGGCAA] [+] EMBL BX625815 [ TTTTGGTTCAGCTACTGCTGAAGTGAGCACCCAGAAGCTGTTAAAATGTGTGTGTTCTTCTNGTGCAAACCGTTCGTGGCGATCGTGCTCAGGTGAGAAGGTAAATGAGAATTCAATTGAGAAGTAGAATGAGCAAAACGAGGGAGAATTGTGTGGAACTATTGTTTTAGTTCATTTCTCAAACAACTACATACAGTCAAAGACACACACACTTCAGATACACTTACACATACTCACGCACGCACATTGCCGAACGGTTTCTGTTACGTCTACCTGTATTATATTTCAACGCTATCTTATCACGATTATTTAGATAGCCGCTAAGTTAGTTAGTTAGTTAGGTTATGATCGCAAGCTATGCATAATGGTGAATCAAAACAGAAATAAATCGTATCCTGAGAATTGTAACATACACACATACACACACAAACACATTTTATACAAGACCATTAGCGTGGTAGT ] consensusID : consensus_5597#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 683 fasta sequence [CCGCCCACGCGTCCGGCTGCACGATAATTGCGTGTAAATGTGGGAGTCGCTTTCCATTACACCTTTCCATCATCCTGATTATCATCGTGTAATATGCTCTCCTATAAATATCTGTTTGCATCGATTTAATCCCTTCATTTACGAGAAGAAAAACAAGAGCGAGAGAGAAAGAGAGATATTAATTACGATTAGTGAGATTTAGGGGGACAAACAGTTTGTGGTACGGTTTAATTTATTACTATTTAGTACGGAATGAAGTATGGCAGGTGTCGCGATCACGACACGCAGCAGGGCATTCGCTCCGTTAATTCTCGATACTAGTAGTAGCAGTGAATAGAAGTTAGTTTAGGACCTGTCCACACACACACACGCCGGTTTGGTTGGACCCTCTCCCCATAAAATACATACATATTTCGCTTTTTAGTTTTGGTTCAGCTACTGCTGAAGTGAGCACCCAGAAGCTGTTAAAATGTGTGTGTTCTTCTTGTGCAAACCGTTCGTGGCGATCGTGCTCAGGTGAGAAGGTAAATGAGAATTCAATTGAGAAGTAGAATGAGCAAAACGAGGGAGAATTGTGTGGAACTATTGTTTTAGTTCATTTCTCAAACAACTACATACAGTCAAAGACACACACACTTCAGATACACTTACACATACTCACGCACGCACATTGCCGAACGGTT] [+] EMBL BM584996 [CCGCCCACGCGTCCGGCTGCACGATAATTGCGTGTAAATGTGGGAGTCGCTTTCCATTACACCTTTCCATCATCCTGATTATCATCGTGTAATATGCTCTCCTATAAATATCTGTTTGCATCGATTTAATCCCTTCATTTACGAGAAGAAAAACAAGAGCGAGAGAGAAAGAGAGATATTAATTACGATTAGTGAGATTTAGGGGGACAAACAGTTTGTGGTACGGTTTAATTTATTACTATTTAGTACGGAATGAAGTATGGCAGGTGTCGCGATCACGACACGCAGCAGGGCATTCGCTCCGTTAATTCTCGATACTAGTAGTAGCAGTGAATAGAAGTTAGTTTAGGACCTGTCCACACACACACACGCCGGTTTGGTTGGACCCTCTCCCCATAAAATACATACATATTTCGCTTTTTAGTTTTGGTTCAGCTACTGCTGAAGTGAGCACCCAGAAGCTGTTAAAATGTGTGTGTTCTTCTTGTGCAAACCGTTCGTGGCGATCGTGCTCAGGTGAGAAGGTAAATGAGAATTCAATTGAGAAGTAGAATGAGCAAAACGAGGGAGAATTGTGTGGAACTATTGTTTTAGTTCATTTCTCAAACAACTACATACAGTCAAAGACACACACACTTCAGATACACTTACACATACTCACGCACGCACATTGCCGAACGGTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5597#1 ------------------------------------------------------------ consensus_5597#2 CCGCCCACGCGTCCGGCTGCACGATAATTGCGTGTAAATGTGGGAGTCGCTTTCCATTAC 60 consensus_5597#0 -------AAATCGTATCCTGAGAATTGTAACATACACATACACACACAAACACATTTTAT 53 consensus_5597#1 ------------------------------------------------------------ consensus_5597#2 ACCTTTCCATCATCCTGATTATCATCGTGTAATATGCTCTCCTATAAATATCTGTTTGCA 120 consensus_5597#0 ACAAGACCATTAGCGTGGTAGTACGGATTTGGTTGATTGTCTCTCTGTACGATCTACCCC 113 consensus_5597#1 ------------------------------------------------------------ consensus_5597#2 TCGATTTAATCCCTTCATTTACGAGAAGAAAAACAAGAGCGAGAGAGAAAGAGAGATATT 180 consensus_5597#0 TTGCTCTCTTGCTTGCTTCCTCCCTATGTGTTTTCCCGTCTTGGTATCTCTCTCTCTCTC 173 consensus_5597#1 ------------------------------------------------------------ consensus_5597#2 AATTACGATTAGTGAGATTTAGGGGGACAAACAGTTTGTGGTACGGTTTAATTTATTACT 240 consensus_5597#0 TCTCGCGCGCGCTGTCGATCTGTTTG-TATACTTTGCAAGGGTTACTTTGCTTTATCGCT 232 consensus_5597#1 --------------------------GTGTCGCGATCACGACACGCAGCAGGGCATTCGC 34 consensus_5597#2 ATTTAGTACGGAATGAAGTATGGCAGGTGTCGCGATCACGACACGCAGCAGGGCATTCGC 300 consensus_5597#0 CAGTACTTCTTTACGGTGTTAGGCACCACTTAC--TCGCGGTAT-CGTTAATTGACCTTT 289 * * ** ** * * * * consensus_5597#1 TCCGTTAATTCTCGATACTAGTAGTAGCAGTG-AATAGAAGTTAGTTTAGGACCTGTCCA 93 consensus_5597#2 TCCGTTAATTCTCGATACTAGTAGTAGCAGTG-AATAGAAGTTAGTTTAGGACCTGTCCA 359 consensus_5597#0 TTCCCAGGCGCAAGGTGCT--TCGCAATTATGGAATGCAAGCCATTTAATGATTATTTAA 347 * * * * * ** * * * ** *** *** * ** * ** * * consensus_5597#1 CACACACACACGCCGGTTTGGTTGGACCCTCTCCCCATAAAATACATACATATTTCGCTT 153 consensus_5597#2 CACACACACACGCCGGTTTGGTTGGACCCTCTCCCCATAAAATACATACATATTTCGCTT 419 consensus_5597#0 TCGAGCGGCAAACCAACAATGCATATAGTTTGTCACAACACACACACTGTTAAAAAGCTT 407 * ** ** * * * ** * * *** ** **** consensus_5597#1 TTTAGTTTTGGTTCAGCTACTG---------CTGAAGTGAGCACC----CAGAAGCTGTT 200 consensus_5597#2 TTTAGTTTTGGTTCAGCTACTG---------CTGAAGTGAGCACC----CAGAAGCTGTT 466 consensus_5597#0 ACTAATAATGATAAAACTTTTGAGCGGAAGGTTAAAGCGGCCACCGTTCTCGACGCGCTT 467 ** * ** * * ** ** * *** * **** ** ** ** consensus_5597#1 AAAA-TGTGTGTGTTCTTCTTGTGCAA----ACCGTTCGTGGCGATCGTGCTCAGGTGAG 255 consensus_5597#2 AAAA-TGTGTGTGTTCTTCTTGTGCAA----ACCGTTCGTGGCGATCGTGCTCAGGTGAG 521 consensus_5597#0 AAAAACACGCAAAAGCCTGAGGAGCACCAGCATCATCCCCACCAGCCCCCTCCCCTTGAA 527 **** * * * * *** * * * * * * * *** consensus_5597#1 AAGGTAAATGAGAATTCAATTGA-GAAGTAGAATGAGCAAAACGAGGGA-GAATTGTGTG 313 consensus_5597#2 AAGGTAAATGAGAATTCAATTGA-GAAGTAGAATGAGCAAAACGAGGGA-GAATTGTGTG 579 consensus_5597#0 AAGGGTTGTTAAAAGACGACAAATGGAAAAGAATACATATTTTTTATGATAAATTATATA 587 **** * * ** * * * * * ***** * ** **** * * consensus_5597#1 GAACTATTGTTTTAGTTCATTTCTCAAACAACT----ACATACAGTCAAAGACACACACA 369 consensus_5597#2 GAACTATTGTTTTAGTTCATTTCTCAAACAACT----ACATACAGTCAAAGACACACACA 635 consensus_5597#0 AAACCAT-ATACATATACATA-CACAGATATCTTTACATATACAGTACGAAAGAGTAATA 645 *** ** * * *** * ** * * ** * ******* * * * * * consensus_5597#1 CTTCAGAT-ACACTTACACATACTCACG---CACGCACATTGCCGAACGGTTTCTGTTAC 425 consensus_5597#2 CTTCAGAT-ACACTTACACATACTCACG---CACGCACATTGCCGAACGGTT-------- 683 consensus_5597#0 ATTAACACCGTAGGTAAGAAGAAGCATGGTTTAGGCGGCAGGTGCAGCAGTAGAAGACGA 705 ** * * * ** * * ** * * ** * * * ** consensus_5597#1 GTCTACCTGTATTATATTTCAACGCTATCTTATCACGATTATTTAGATAGCCGCTAAGTT 485 consensus_5597#2 ------------------------------------------------------------ consensus_5597#0 GTGTGCATATAAGAAAGGATAAATAGAATAAATAATTCGACCGTAGAANGTCAGAGATCG 765 consensus_5597#1 AGTTAGTTAGTTAGGTTATGATCGCAAGCTATGCATAATGGTGAATCAAAACAGAAATAA 545 consensus_5597#2 ------------------------------------------------------------ consensus_5597#0 GATCATATGAGTCGCCCCGGCATCATCTCAAGCACTATATCTG----------------- 808 consensus_5597#1 ATCGTATCCTGAGAATTGTAACATACACACATACACACACAAACACATTTTATACAAGAC 605 consensus_5597#2 ------------------------------------------------------------ consensus_5597#0 ------------------------------------------------------------ consensus_5597#1 CATTAGCGTGGTAGTACGGATTTTGGTCGATTTGTCTGTATACTTTGCAAGGGTTACTTT 665 consensus_5597#2 ------------------------------------------------------------ consensus_5597#0 ------------------------------------------------------------ consensus_5597#1 GCTTTATCGCTCAGTACTTGTTTATGGTGTTAGGCACCACTTACTCGCGGTATCGTTAAT 725 consensus_5597#2 ------------------------------------------------------------ consensus_5597#0 ------------------------------------------------------------ consensus_5597#1 TGACCTTTTTCCCAGGCGCAAGGNGCTTCGCAATTATGGAATGCAAGCCATTTATGATTA 785 consensus_5597#2 ------------------------------------------------------------ consensus_5597#0 ------------------------------------------------------------ consensus_5597#1 TTTAATCGAGCGGCAA 801 consensus_5597#2 ---------------- consensus_5597#0 ---------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||