These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5604#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 657 fasta sequence [CCGCCCACGCGTCCGCTTGGCAACGAAACACCTGCAAATTTATCTCGTTATAAACAAAGTATACTGCGTAATAGTTATTTTTAATTCGTTATCGCAACCGGCCATCGTTTATGCTGTGCTAAGCGCATCTCCGCCATCACAACAAAAAATGTCGACGAAAGATTTTAACATCTCGCGGGACGAGTTCCGCAACATCACCCGCTGTTTGGACAACGAGGAGTTCCGGAACCTGTTCATGGAGTACTGCACCGAGCTGCGGGACAACCGGAAACAGTACTAGGACGAGCTGTCCATGCTGGAGGCGCAGCGGGGATACGACGTAAAGTTCCTCAAGCCTTCGCCGGGTTACGTAATCAAAACAATCGTCGACGGCAAGGGCAAGGGATTTATCAATGTGTGCCAGTCCGAGCTGGTGCAGAAACCGACCAGCACCACCGGACTGAATGAGGACGGCACGAAGGGGCTGAAATGGAGCGTCCCGTACGCCCAGACGCAGCCGCGGAAGGACTACGACAACAAGCGTCGAGTGCACCGTGTACGACGTGATGTTTCACCCAGACGCGCTGCACTTGGCGTCGAAGAATGAGGGCTTCCGCAAGCTGCTGAACGATACGTCGCTCGATGCGGTCGAGCAGTCGTTCAAGGTGCGGCTGGACC] [+] EMBL BM585665 [CCGCCCACGCGTCCGCTTGGCAACGAAACACCTGCAAATTTATCTCGTTATAAACAAAGTATACTGCGTAATAGTTATTTTTAATTCGTTATCGCAACCGGCCATCGTTTATGCTGTGCTAAGCGCATCTCCGCCATCACAACAAAAAATGTCGACGAAAGATTTTAACATCTCGCGGGACGAGTTCCGCAACATCACCCGCTGTTTGGACAACGAGGAGTTCCGGAACCTGTTCATGGAGTACTGCACCGAGCTGCGGGACAACCGGAAACAGTACTAGGACGAGCTGTCCATGCTGGAGGCGCAGCGGGGATACGACGTAAAGTTCCTCAAGCCTTCGCCGGGTTACGTAATCAAAACAATCGTCGACGGCAAGGGCAAGGGATTTAT ] [+] EMBL BM646696 [ CCG TTGGCAACGAAACACCTGCAAATTTATCTCGTTATAAACAAAGTATACTGCGTAATAGTTATTTTTAATTCGTTATCGCAACCGGCCATCGTTTATGCTGTGCTAAGCGCATCTCCGCCATCACAACAAAAAATGTCGACGAAAGATTTTAACATCTCGCGGGACGAGTTCCGCAACATCACCCGCTGTTTGGACAACGAGGAGTTCCGGAACCTGTTCATGGAGTACTGCACCGAGCTGCGGGACAACCGGAAACAGTACGAGGACGAGCTGTCCATGCTGGAGGCGCAGCGGGGATACGACGTAAAGTTCCTCAAGCCTTCGCCGGGTTACGTAATCAAAACAATCGTCGACGGCAAGGGCAAGGGATTTATCAATGTGTGCCAGTCCGAGCTGGTGCAGAAACCGACCAGCACCACCGGACTGAATGAGGACGGCACGAAGGGGCTGAAATGGAGCGTCCCGTACGCCCAGACGCAGCCGCGGAAGGACTACGACAACAAGCGTCGAGTGCACCGTGTACGACGTGATGTTTCACCCAGACGCGCTGCACTTGGCGTCGAAGAATGAGGGCTTCCGCAAGCTGCTGAACGATACGTCGCTCGATGCGGTCGAGCAGTCGTTCAAGGTGCGGCTGGACC] consensusID : consensus_5604#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 623 fasta sequence [CCGCCCACGCGTCCGAGCGCATCTCCGCCATCACAACAAAAAATGTCGACGAAAGATTTTAACATCTCGCGGGACGAGTTCCGCAACATCACCCGCTGTTTGGACAACGAGGAGTTCCGGAACCTGTTCATGGAGTACTGCACCGAGCTGCGGGACAACCGGAAACAGTACGAGGACGAGCTGTCCATGCTGGAGGCGCAGCGGGGATACGACGTAAAGTTCCTCAAGCCTTCGCCGGGTTACGTAATCAAAACAATCGTCGACGGCAAGGGCAAGGGATTTATCAATGTGTGCCAGTCCGAGCTGGTGCAGAAACCGACCAGCACCACCGGACTGAATGAGGACGGCACGAAGGGGCTGAAATGGAGCGTCCCGTACGCCCAGACGCAGCCGCGGAAGGACTACGACAACAAGCGCGTCGAGTGCACCGTGTACGACGTGATGTTTCACCCGGACGCGCTGCACTTGGCGTCGAAGAATGAGGGCTTCCGCAAGCTGCTGAACGATACGTCGCTCGATGCGGTCGAGCAGTCGTTCAAGGTGCGGCTGGACCGGGCGAACCTTCGCTTCCCGAAGCTACAGTACAAGGGCACGCCCAGCTCGTCGGTGGTGCGGGAAAAGCT] [+] EMBL BM585990 [CCGCCCACGCGTCCGAGCGCATCTCCGCCATCACAACAAAAAATGTCGACGAAAGATTTTAACATCTCGCGGGACGAGTTCCGCAACATCACCCGCTGTTTGGACAACGAGGAGTTCCGGAACCTGTTCATGGAGTACTGCACCGAGCTGCGGGACAACCGGAAACAGTACGAGGACGAGCTGTCCATGCTGGAGGCGCAGCGGGGATACGACGTAAAGTTCCTCAAGCCTTCGCCGGGTTACGTAATCAAAACAATCGTCGACGGCAAGGGCAAGGGATTTATCAATGTGTGCCAGTCCGAGCTGGTGCAGAAACCGACCAGCACCACCGGACTGAATGAGGACGGCACGAAGGGGCTGAAATGGAGCGTCCCGTACGCCCAGACGCAGCCGCGGAAGGACTACGACAACAAGCGCGTCGAGTGCACCGTGTACGACGTGATGTTTCACCCGGACGCGCTGCACTTGGCGTCGAAGAATGAGGGCTTCCGCAAGCTGCTGAACGATACGTCGCTCGATGCGGTCGAGCAGTCGTTCAAGGTGCGGCTGGACCGGGCGAACCTTCGCTTCCCGAAGCTACAGTACAAGGGCACGCCCAGCTCGTCGGTGGTGCGGGAAAAGCT] consensusID : consensus_5604#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 609 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGGAAAAAAAACTTGCCGGGATCTTGGCAACGAAACACCTGCAAATTTATCTCGTTATAAACAAAGTATACTGCGTAATAGTTATTTTTAATTCGTTATCGCAACCGGCCATCGTTTATGCTGTGCTAAGCGCATCTCCGCCATCACAACAAAAAATGTCGACGAAAGATTTTAACATCTCGCGGGACGAGTTCCGCAACATCACCCGCTGTTTGGACAACGAGGAGTTCCGGAACCTGTTCATGGAGTACTGCACCGAGCTGCGGGACAACCGGAAACAGTACGAGGACGAGCTGTCCATGCTGGAGGCGCAGCGGGGATACGACGTAAAGTTCCTCAAGCCTTCGCCGGGTTACGTAATCAAAACAATCGTCGACGGCAAGGGCAAGGGATTTATCAATGTGTGCCAGTCCGAGCTGGTGCAGAAACCGACCAGCACCACCGGACTGAATGAGGACGGCACGAAGGGGCTGAAATGGAGCGTCCCGTACGCCCAGACGCAGCCGCGGAAGGACTACGACAACAAGCGCGTCGAGTGCACCGTGTACGACGTGATGTTTCACCCAGACGCGCTGCACTTTGGC] [+] EMBL BM588616 [CCGCCCACGCGTCCGCCCACGCGTCCGGAAAAAAAACTTGCCGGGATCTTGGCAACGAAACACCTGCAAATTTATCTCGTTATAAACAAAGTATACTGCGTAATAGTTATTTTTAATTCGTTATCGCAACCGGCCATCGTTTATGCTGTGCTAAGCGCATCTCCGCCATCACAACAAAAAATGTCGACGAAAGATTTTAACATCTCGCGGGACGAGTTCCGCAACATCACCCGCTGTTTGGACAACGAGGAGTTCCGGAACCTGTTCATGGAGTACTGCACCGAGCTGCGGGACAACCGGAAACAGTACGAGGACGAGCTGTCCATGCTGGAGGCGCAGCGGGGATACGACGTAAAGTTCCTCAAGCCTTCGCCGGGTTACGTAATCAAAACAATCGTCGACGGCAAGGGCAAGGGATTTATCAATGTGTGCCAGTCCGAGCTGGTGCAGAAACCGACCAGCACCACCGGACTGAATGAGGACGGCACGAAGGGGCTGAAATGGAGCGTCCCGTACGCCCAGACGCAGCCGCGGAAGGACTACGACAACAAGCGCGTCGAGTGCACCGTGTACGACGTGATGTTTCACCCAGACGCGCTGCACTTTGGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5604#0 ------------CCGCCCACGCGTCCG--------------------CTTGGCAACGAAA 28 consensus_5604#2 CCGCCCACGCGTCCGCCCACGCGTCCGGAAAAAAAACTTGCCGGGATCTTGGCAACGAAA 60 consensus_5604#1 ------------------------------------------------------------ consensus_5604#0 CACCTGCAAATTTATCTCGTTATAAACAAAGTATACTGCGTAATAGTTATTTTTAATTCG 88 consensus_5604#2 CACCTGCAAATTTATCTCGTTATAAACAAAGTATACTGCGTAATAGTTATTTTTAATTCG 120 consensus_5604#1 ------------------------------------------------------------ consensus_5604#0 TTATCGCAACCGGCCATCGTTTATGCTGTGCTAAGCGCATCTCCGCCATCACAACAAAAA 148 consensus_5604#2 TTATCGCAACCGGCCATCGTTTATGCTGTGCTAAGCGCATCTCCGCCATCACAACAAAAA 180 consensus_5604#1 ----------------CCGCCCACGC-GT-CCGAGCGCATCTCCGCCATCACAACAAAAA 42 ** * ** ** * *************************** consensus_5604#0 ATGTCGACGAAAGATTTTAACATCTCGCGGGACGAGTTCCGCAACATCACCCGCTGTTTG 208 consensus_5604#2 ATGTCGACGAAAGATTTTAACATCTCGCGGGACGAGTTCCGCAACATCACCCGCTGTTTG 240 consensus_5604#1 ATGTCGACGAAAGATTTTAACATCTCGCGGGACGAGTTCCGCAACATCACCCGCTGTTTG 102 ************************************************************ consensus_5604#0 GACAACGAGGAGTTCCGGAACCTGTTCATGGAGTACTGCACCGAGCTGCGGGACAACCGG 268 consensus_5604#2 GACAACGAGGAGTTCCGGAACCTGTTCATGGAGTACTGCACCGAGCTGCGGGACAACCGG 300 consensus_5604#1 GACAACGAGGAGTTCCGGAACCTGTTCATGGAGTACTGCACCGAGCTGCGGGACAACCGG 162 ************************************************************ consensus_5604#0 AAACAGTACTAGGACGAGCTGTCCATGCTGGAGGCGCAGCGGGGATACGACGTAAAGTTC 328 consensus_5604#2 AAACAGTACGAGGACGAGCTGTCCATGCTGGAGGCGCAGCGGGGATACGACGTAAAGTTC 360 consensus_5604#1 AAACAGTACGAGGACGAGCTGTCCATGCTGGAGGCGCAGCGGGGATACGACGTAAAGTTC 222 ********* ************************************************** consensus_5604#0 CTCAAGCCTTCGCCGGGTTACGTAATCAAAACAATCGTCGACGGCAAGGGCAAGGGATTT 388 consensus_5604#2 CTCAAGCCTTCGCCGGGTTACGTAATCAAAACAATCGTCGACGGCAAGGGCAAGGGATTT 420 consensus_5604#1 CTCAAGCCTTCGCCGGGTTACGTAATCAAAACAATCGTCGACGGCAAGGGCAAGGGATTT 282 ************************************************************ consensus_5604#0 ATCAATGTGTGCCAGTCCGAGCTGGTGCAGAAACCGACCAGCACCACCGGACTGAATGAG 448 consensus_5604#2 ATCAATGTGTGCCAGTCCGAGCTGGTGCAGAAACCGACCAGCACCACCGGACTGAATGAG 480 consensus_5604#1 ATCAATGTGTGCCAGTCCGAGCTGGTGCAGAAACCGACCAGCACCACCGGACTGAATGAG 342 ************************************************************ consensus_5604#0 GACGGCACGAAGGGGCTGAAATGGAGCGTCCCGTACGCCCAGACGCAGCCGCGGAAGGAC 508 consensus_5604#2 GACGGCACGAAGGGGCTGAAATGGAGCGTCCCGTACGCCCAGACGCAGCCGCGGAAGGAC 540 consensus_5604#1 GACGGCACGAAGGGGCTGAAATGGAGCGTCCCGTACGCCCAGACGCAGCCGCGGAAGGAC 402 ************************************************************ consensus_5604#0 TACGACAACAAGCG--TCGAGTGCACCGTGTACGACGTGATGTTTCACCCAGACGCGCTG 566 consensus_5604#2 TACGACAACAAGCGCGTCGAGTGCACCGTGTACGACGTGATGTTTCACCCAGACGCGCTG 600 consensus_5604#1 TACGACAACAAGCGCGTCGAGTGCACCGTGTACGACGTGATGTTTCACCCGGACGCGCTG 462 ************** ********************************** ********* consensus_5604#0 CACTT-GGCGTCGAAGAATGAGGGCTTCCGCAAGCTGCTGAACGATACGTCGCTCGATGC 625 consensus_5604#2 CACTTTGGC--------------------------------------------------- 609 consensus_5604#1 CACTT-GGCGTCGAAGAATGAGGGCTTCCGCAAGCTGCTGAACGATACGTCGCTCGATGC 521 ***** *** consensus_5604#0 GGTCGAGCAGTCGTTCAAGGTGCGGCTGGACC---------------------------- 657 consensus_5604#2 ------------------------------------------------------------ consensus_5604#1 GGTCGAGCAGTCGTTCAAGGTGCGGCTGGACCGGGCGAACCTTCGCTTCCCGAAGCTACA 581 consensus_5604#0 ------------------------------------------ consensus_5604#2 ------------------------------------------ consensus_5604#1 GTACAAGGGCACGCCCAGCTCGTCGGTGGTGCGGGAAAAGCT 623 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||