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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5608#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 930 fasta sequence
[TATTCATTTTGTTGAATTAAAGCCGACAGCAATGTTATTTACGATGATTTGTTCGTGCTGTTTGTAATGGAAAAGCCATATGATCGCGTAATACATGCTTCAGTCGGTCATTCCGAAGTAAGTTAGTAACCGTAGACTGCACAAAACAGCAATGCGGATCAATATTAATCTTCTCAAAAGGCAATCCAATTATGAACAACAACGGAGCTACAGTCTTTGCACTTTATATCATCCATACACTTTGTTCTCTGTACAAATGCTATCCAATACAGCTACCCCGAACGACCCAGCTGCTTTACCGTTTAAATGCACAATTGTAATCTACTGCAGTTGGGTGTAGCTACAGATTCTTCCCTTTCTAGATGCCTCCCGTTCTCTAAGATGATGATCTGCTCTGCAGAACCTTTCGCATGCTCGCGAACATATTTGGCAAGATGGCAACATGCTTGTCGACGCATTTAATCGCACACCGTTCAAACTCGGCAGTATACTTAGCAATATCGCTCTCGGACGGATTGGGTCCCATCTTGTCCTTAATCGTATCATTGCAATCCATTACACAACGCTGCAGGCGACTGTTGAACGAGTTGATCTCGGTTTCCACGTGCTGCTGGGCTCGCTGGGCAGGGACAGAGCACCGCTCGACGCACTGCTGCACCGTGTCCATGGAGGAAACGGAATCCTTACAGCATCGGGCAGCACAATCGTGCATATCGGCTTGCATTTTCCGCAGCACATTGCGGTCGAGATCGTCCAGCTGTTTGGTGATCTCCATTTCGATCCGCTGCTTCTGTTGTTCGATCATTTTTGTGTAGAGTTTGTGTTATGAAATAACGAGGACTGCTATGCGCTATCAACAACTTTTTTCCACTCCGCCGAAGATGTTAATTCCGATCCAGTAGGCCAACAGTTCTCGAGGAATTCCGCAGC]
[+] EMBL CNS0910Z [TATTCATTTTGTTGAATTAAAGCCGACAGCAATGTTATTTACGATGATTTGTTCGTGCTGTTTGTAATGGAAAAGCCATATGATCGCGTAATACATGCTTCAGTCGGTCATTCCGAAGTAAGTTAGTAACCGTAGACTGCACAAAACAGCAATGCGGATCAATATTAATCTTCTCAAAAGGCAATCCAATTATGAACAACAACGGAGCTACAGTCTTTGCACTTTATATCATCCATACACTTTGTTCTCTGTACAAATGCTATCCAATACAGCTACCCCGAACGACCCAGCTGCTTTACCGTTTAAATGCACAATTGTAATCTACTGCAGTGGGGTGTAGCTACAGATTCTTCCCTTTCTAGATGCCTCCCGTTCTCTAAGATGATGATCTGCTCTGCAGAACCTTTCGCATGCTCGCGAACATATTTGGCAAGATGGCAACATGCTTGTCGACGCATTTAATCGCACACCGTTCAAACTCGGCAGTATACTTAGCAATATCGCTCTCGGACGGATTGGGTCCCATCTTGTCCTTAATCGTATCATTGCAATCCATTACACAACGCTGCAGGCGACTTTTGAACGAGTTGATCTCGGTTTCCACGTGCTGCTGGGCTCGCTGGGCAGGGACAGAGCACCGCTCGACGCACTGCTGCACCGTGTCCATGGAGGAAACGGAATCCTTACAGCATCGGGCAGCACAATCGTGCATATCGGCTTGCATTTTCCGCAGCACATTGCGGTCGAGATCGTCCAGCTGTTTGGTGATCTCCATTTCGATCCGCTGCTTCTGTTGTTCGATCATTTTTGTGTAGAGTTTGTGTTATGAAATAACGAGGACTGCTATGCGCTATCAACAACTTTTTTCCACTCCGCCGAAGATGTTAATTCCGATCCAGTAGGCCAACAGTTCTCGAGGAATTCCGCAGC]
[-] EMBL CNS0910Y [ CGAAGTAAGTCAGTCACCGTAGACTGCACAAAACAGCAATGCGGATCAATATTAATCTTCTCAAAAGGCAATCCAATTATGAACAACAACGGAGCTACAGTCTTTGCACTTTATATCATCCATACACTTTGTTCTCTGTACAAATGCTATCCAATACAGCTACCCCGAACGACCCAGCTGCTTTACCGTTTAAATGCACAATTGTAATCTACTGCAGTTGGGTGTAGCTACAGATTCTTCCCTTTCTAGATGCCTCCCGTTCTCTAAGATGATGATCTGCTCTGCAGAACCTTTCGCATGCTCGCGAACATATTTGGCAAGATGGCAACATGCTTGTCGACGCATTTAATCGCACACCGTTCAAACTCGGCAGTATACTTAGCAATATCGCTCTCGGACGGATTGGGTCCCATCTTGTCCTTAATCGTATCATTGCAATCCATTACACAACGCTGCAGGCGACTGTTGAACGAGTTGATCTCGGTTTCCACGTGCTGCTGGGCTCGCTGGGCAGGGACAGAGCACCGCTCGACGCACTGCTGCACCGTGTCCATGGAGGAAACGGAATCCTTACAGCATCGGGCAGCACAATCGTGCATATCGGCTTGCATTTTCCGCAGCACATTGCGGTCGAGATCGTCCAGCTGTTTGGTGATCTCCATTTCGATCCGCTGCTTCTGTTGTTCGATCATTTTTGTGTAGAGTTTGTGTGATGAAATAACGAGGACTGCTATGCGCTATCAACAACTTTTTTCCACTCCGCCGAAGATGTca ]
[-] EMBL BM621772 [ ACAGTCTTTGCACTTTATATCATCCATACACTTTGTTCTCTGTACAAATGCTATCCAATACAGCTACCCCGAGCGACCCAGCTGCTTTACCGTTTAAATGCACAATTGTAATCTACTGCAGTTGGGTGTAGCTACAGATTCTTCCCTTTCTAGATGCCTCCCGTTCTCTACGATGATGATCTGCTCTGCAGAACCTTTCGCATGCTCGCGAACATATTTGGCAAGATGGCAACATGCTTGTCGACGCATTTAATCGCACACCGTTCAAACTCGGCAGTATACTTAGCAATATCGCTCTCGGACGGATTGGGTCCCATCTTGTCCTTAATCGTATCATTGCAATCCATTACACAACGCTGCAGGCGACTGTTGAACGAGTTGATCTCCGTTTCCACGTGCTGCTGGGCTCGCTGGGCAGGGACAGAGCACCGCTCGACGCACTGCTGCACCGTGTCCATGGAGGAAACGGAATCCTTACAGCATCGGGCAGCACAATCGTGCATATCGGCTTGCATTTTCCGCAGCACATTGCGGTCGAGATCGTCCAGCTG TTGGTGATCTCCATTTCGATCCGCTGCTTCTGTTGTTCGATCATTTTTGTGTAGAGcgg ]
consensusID : consensus_5608#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 621 fasta sequence
[GTTCTGTGTACAAATGCTATCCAATACAGCTACCCCGAGCGACCCAGCTGCTTTACCGTTTAAATGCACAATTGTAATCTACTGCAGTTGGGTGTAGCTACAGATTCTTCCCTTTCTAGATGCCTCCCGTTCTCTACGATGATGATCTGCTCTGCAGAACCTTTCGCATGCTCGCGAACATATTTGGCAAGATGGCTACATGCTTGTCGACGCATTTAATCGCACACCGTTCAAACTCGGCAGTATACTTAGCAATATCGCTCTCGGACGGATTGGGTCCCATCTTGTCCTTAATCGTATCATTGCAATCCATTACACAACGCTGCAGGCGACTGTTGAACGAGTTGATCTCGGTTTCCACGTGCTGCTGGGCTCGCTGGGCAGGGACAGAGCAACGCTCGACGCACTGCTGCACCGTGTCCATGGAGGAAACGGAATCCTTACAGCATCGGGCAGCACAATCGTGCATATCGGCTTGCATTTTCCGCAGCACATTGCGGTCGAGATCGTCCAGCTGTTTGGTGATCTCCATTTCGATCCGCTGCTTCTGTTGTTCGATCATTTTTTGTAGAGTTTGTGTGATGAAATAACGAGGACTGCTATGCGCGGACGCGTGGGCGG]
[-] EMBL BM586030 [GTTCTGTGTACAAATGCTATCCAATACAGCTACCCCGAGCGACCCAGCTGCTTTACCGTTTAAATGCACAATTGTAATCTACTGCAGTTGGGTGTAGCTACAGATTCTTCCCTTTCTAGATGCCTCCCGTTCTCTACGATGATGATCTGCTCTGCAGAACCTTTCGCATGCTCGCGAACATATTTGGCAAGATGGCTACATGCTTGTCGACGCATTTAATCGCACACCGTTCAAACTCGGCAGTATACTTAGCAATATCGCTCTCGGACGGATTGGGTCCCATCTTGTCCTTAATCGTATCATTGCAATCCATTACACAACGCTGCAGGCGACTGTTGAACGAGTTGATCTCGGTTTCCACGTGCTGCTGGGCTCGCTGGGCAGGGACAGAGCAACGCTCGACGCACTGCTGCACCGTGTCCATGGAGGAAACGGAATCCTTACAGCATCGGGCAGCACAATCGTGCATATCGGCTTGCATTTTCCGCAGCACATTGCGGTCGAGATCGTCCAGCTGTTTGGTGATCTCCATTTCGATCCGCTGCTTCTGTTGTTCGATCATTTTTTGTAGAGTTTGTGTGATGAAATAACGAGGACTGCTATGCGCGGACGCGTGGGCGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5608#0 TATTCATTTTGTTGAATTAAAGCCGACAGCAATGTTATTTACGATGATTTGTTCGTGCTG 60
consensus_5608#1 ------------------------------------------------------------
consensus_5608#0 TTTGTAATGGAAAAGCCATATGATCGCGTAATACATGCTTCAGTCGGTCATTCCGAAGTA 120
consensus_5608#1 ------------------------------------------------------------
consensus_5608#0 AGTTAGTAACCGTAGACTGCACAAAACAGCAATGCGGATCAATATTAATCTTCTCAAAAG 180
consensus_5608#1 ------------------------------------------------------------
consensus_5608#0 GCAATCCAATTATGAACAACAACGGAGCTACAGTCTTTGCACTTTATATCATCCATACAC 240
consensus_5608#1 ------------------------------------------------------------
consensus_5608#0 TTTGTTCTCTGTACAAATGCTATCCAATACAGCTACCCCGAACGACCCAGCTGCTTTACC 300
consensus_5608#1 ---GTTCTGTGTACAAATGCTATCCAATACAGCTACCCCGAGCGACCCAGCTGCTTTACC 57
***** ******************************** ******************
consensus_5608#0 GTTTAAATGCACAATTGTAATCTACTGCAGTTGGGTGTAGCTACAGATTCTTCCCTTTCT 360
consensus_5608#1 GTTTAAATGCACAATTGTAATCTACTGCAGTTGGGTGTAGCTACAGATTCTTCCCTTTCT 117
************************************************************
consensus_5608#0 AGATGCCTCCCGTTCTCTAAGATGATGATCTGCTCTGCAGAACCTTTCGCATGCTCGCGA 420
consensus_5608#1 AGATGCCTCCCGTTCTCTACGATGATGATCTGCTCTGCAGAACCTTTCGCATGCTCGCGA 177
******************* ****************************************
consensus_5608#0 ACATATTTGGCAAGATGGCAACATGCTTGTCGACGCATTTAATCGCACACCGTTCAAACT 480
consensus_5608#1 ACATATTTGGCAAGATGGCTACATGCTTGTCGACGCATTTAATCGCACACCGTTCAAACT 237
******************* ****************************************
consensus_5608#0 CGGCAGTATACTTAGCAATATCGCTCTCGGACGGATTGGGTCCCATCTTGTCCTTAATCG 540
consensus_5608#1 CGGCAGTATACTTAGCAATATCGCTCTCGGACGGATTGGGTCCCATCTTGTCCTTAATCG 297
************************************************************
consensus_5608#0 TATCATTGCAATCCATTACACAACGCTGCAGGCGACTGTTGAACGAGTTGATCTCGGTTT 600
consensus_5608#1 TATCATTGCAATCCATTACACAACGCTGCAGGCGACTGTTGAACGAGTTGATCTCGGTTT 357
************************************************************
consensus_5608#0 CCACGTGCTGCTGGGCTCGCTGGGCAGGGACAGAGCACCGCTCGACGCACTGCTGCACCG 660
consensus_5608#1 CCACGTGCTGCTGGGCTCGCTGGGCAGGGACAGAGCAACGCTCGACGCACTGCTGCACCG 417
************************************* **********************
consensus_5608#0 TGTCCATGGAGGAAACGGAATCCTTACAGCATCGGGCAGCACAATCGTGCATATCGGCTT 720
consensus_5608#1 TGTCCATGGAGGAAACGGAATCCTTACAGCATCGGGCAGCACAATCGTGCATATCGGCTT 477
************************************************************
consensus_5608#0 GCATTTTCCGCAGCACATTGCGGTCGAGATCGTCCAGCTGTTTGGTGATCTCCATTTCGA 780
consensus_5608#1 GCATTTTCCGCAGCACATTGCGGTCGAGATCGTCCAGCTGTTTGGTGATCTCCATTTCGA 537
************************************************************
consensus_5608#0 TCCGCTGCTTCTGTTGTTCGATCATTTTTGTGTAGAGTTTGTGTTATGAAATAACGAGGA 840
consensus_5608#1 TCCGCTGCTTCTGTTGTTCGATCATTTTT-TGTAGAGTTTGTGTGATGAAATAACGAGGA 596
***************************** ************** ***************
consensus_5608#0 CTGCTATGCGCTATCAACAACTTTTTTCCACTCCGCCGAAGATGTTAATTCCGATCCAGT 900
consensus_5608#1 CTGCTATGCGCGGACGCGTGGGCGG----------------------------------- 621
*********** *
consensus_5608#0 AGGCCAACAGTTCTCGAGGAATTCCGCAGC 930
consensus_5608#1 ------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||