These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5617#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1313 fasta sequence [CCGCCCACGCGTCCGAAAATG-G-CGAAAGAAAACAGGAATAAGCAGCAACGCAAGTGAAATAATCCGAAAAGCGCGATTAATAATGGAAATACCAGCCAAAAATATAGTGTCCGACGAAACATTCTGCATCTGGAAAGGGTGTATTCTGAATAGTGTTGAAAATTCGCAACCGTTCGTGCATTGGAAGTCGCATAACTGTGGTCCACGAGTTGATGTTGTTGGTGGTGTTGGTGTGGCGGAACAAAAGATTTCGTGCTTAAGCACTCGAGTTTTCTCGACGTCGTCGAACAACGGGCAGTCTGTTCTACGCGTAATTATGCCAATGTTATTGATGCTAAATTCGATCACGATGACTAAGAACGCACGTTTGGACTCTAATATCGTGACCGTGACGTCGCACCGCTGGGAATAATAGGAGATTTCCCCAGGTGGATTGCATCGCAATCGTTAGTGAAAATATTCTGTATATAGAAACCCGTTCTGGCGGTGATACTAAAGATTCGTAGCAATAACAGTGTAAATATTCACCACGTACGCAATGCTGTCCGAACGAAAGCAACCTTACTACCCTTCGTCGGCTGGCGATA-T-CAACGGTTCAGTTCCGCCCATGAAGGAGGCTGCATTTGATGAATGGTCAAAACATCGACTTCCGCAGCACAGCTATTCCATTACAGATGGTAGCGAAAAGCTAGCCGATCTTAAGATGGGTGCCTCTAAATCTCCCGCGGTTGCTGTGTTAGCGGCACTCAAGGGCACCTTTTTAAATATCGTCAGCTGGTCAGCTGGTCAACTGTCTGTTCTTAACGGAACGAAACCAGAGGCACACGTATCGCAAACCATGGTGGAGAAAGAGGAGCAGGCGAAGAAAGTGACGAACGCCTCATCGTCGTGCATTCCTATATTCGAAACGACCAGTAATGGAAAGGGTCAACTTACGGTGCCATTGGACTACAGTAGCACGGTCGACGATATTTCCATGACCCCAGCTGGTGTGTATTTCGAGGAAACAGCGCGTAGCGATCGAAACGCGTCACGGCCTGGGCGGCGAAAGCGAAGGAAAGACACATCCAAAAGCAACCAGAACGTACATGCAGGTAGCGAGGGCGGCAGTAGCAAAGGCTGTGGTAAAAATCGAAAAGATAAGAAACGACACGCGCTGCGTAGAGACATTCTGAGCGATAATCTAGCCTTATCTATGGACGATAGCTGCTATGGCTACGATTTCCGGGAAGCTGTGTATAGCAATCCTGTGATGGAAACACACTCGCTGCCCCAACGATGNTTGTCGTCGAGCTTCAGCCCCGTCATCGACT] [+] EMBL BM586918 [CCGCCCACGCGTCCGAAAATG G CGAAAGAAAACAGGAATAAGCAGCAACGCAAGTGAAATAATCCGAAAAGCGCGATTAATAATGGAAATACCAGCCAAAAATATAGTGTCCGACGAAACATTCTGCATCTGGAAAGGGTGTATTCTGAATAGTGTTGAAAATTCGCAACCGTTCGTGCATTGGAAGTCGCATAACTGTGGTCCACGAGTTGATGTTGTTGGTGGTGTTGGTGTGGCGGAACAAAAGATTTCGTGCTTAAGCACTCGAGTTTTCTCGACGTCGTCGAACAACGGGCAGTCTGTTCTACGCGTAATTATGCCAATGTTATTGATGCTAAATTCGATCACGATGACTAAGAACGCACGTTTGGACTCTAATATCGTGACCGTGACGTCGCACCGCTGGGAATAATAGGAGATTTCCCCAGGTGGATTGCATCGCAATCGTTAGTGAAAATATTCTGTATATAGAAACCCGTTCTGGCGGTGATACTAAAGATTCGTAGCAATAACAGTGTAAATATTCACCACGTACGCAATGCTGTCCGAACGAAAGCAACCTTACTACCCTTCGTCGGCTGGCGATA TCCAACGGTTCAGTTCCGCCCATGAAGGAGGCTGCATTTGATGAATGGTCAAAACATCGACTTCCGCAGCACAGCTATTCCATTACA ] [+] EMBL BM596241 [CCGCCCACGCGTCCGCCCACGCGTCCGAAGAAAACAGGAATAAGCAGCAACGCAAGTGAAATAATCCGAAAAGCGCGATTAATAATGGAAATACCAGCCAAAAATATAGTGTCCGACGAAACATTCTGCATCTGGAAAGGGTGTATTCTGAATAGTGTTGAAAATTCGCAACCGTTCGTGCATTGGAAGTCGCATAACTGTGGTCCACGAGTTGATGTTGTTGGTGGTGTTGGTGTGGCGGAACAAAAGATTTCGTGCTTAAGCACTCGAGTTTTCTCGACGTCGTCGAACAACGGGCAGTCTGTTCTACGCGTAATTATGCCAATGTTATTGATGCTAAATTCGATCACGATGACTAAGAACGCACGTTTGGACTCTAATATCGTGACCGTGACGTCGCACCGCTGGGAATAATAGGAGATTTCCCCAGGTGGATTGCATCGCAATCGTTAGTGAAAATATTCTGTATATAGAAACCCGTTCTGGCGGTGATTCTAAAGATTCGTAGCAATAACAGTGTAAATATTCACCCCGTACGCAATGCTGTCCGAACGAAAGCAACCTTACTACCCTTCGTCGGCTGGCGATATT CAACGGTTCAGTTCCGCCCATGAAGGAGGCTGCATTTGATGAATGGTCAAAACATCGACTTCCGCAGCACAACTATTC ] [+] EMBL BX621654 [ GATACTAAAGATTCGTAGCAATAACAGTGTAAATATTCACCTCGTACGCAATGCTGTCCGAACGAAAGCAACCTTACTACCCTTCGTCGGCTGGCGATA T CAACGGTTCAGTTCCGCCCATGAAGGAGGCTGCATTTGATGAATGGTCAAAACATCGACTTCCGCAGCACAGCTATTCCATTACAGATGGTAGCGAAAAGCTAGCCGATCTTAAGATGGGTGCCTCTAAATCTCCCGCGGTTGCTGTGTTAGCGGCACTCAAGGGCACCTTTTTAAATATCGTCAGCTGGTCAGCTGGTCAACTGTCTGTTCTTAACGGAACGAAACCAGAGGCACACGTATCGCAAACCATGGTGGAGAAAGAGGAGCAGGCGAAGAAAGTGACGAACGCCTCATCGTCGTGCATTCCTATATTCGAAACGACCAGTAATGGAAAGGGTCAACTTACGGTGCCATTGGACTACAGTAGCACGGTCGACGATATTTCCATGACCCCAGCTGGTGTGTATTTCGAGGAAACAGCGCGTAGCGATCGAAACGCGTCACGGCCTGGGCGGCGAAAGCGAAGGAAAGACACATCCAAAAGCAACCAGAACGTACATGCAGGTAGCGAGGGCGGCAGTAGCAAAGGCTGTGGTAAAAATCGAAAAGATAAGAAACGACACGCGCTGCGTAGAGACATTCTGAGCGATAATCTAGCCTTATCTATGGACGATAGCTGCTATGGCTACGATTTCCGGGAAGCTGTGTATAGCAATCCTGTGATGGAAACACACTCGCTGCCCCAACGATGNTTGTCGTCGAGCTTCAGCCCCGTCATCGACT] consensusID : consensus_5617#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 102 fasta sequence [ATANTCTAACCNTATCTATGGACGANAGCTGCTATGGCTACGATTTCCGGGAAGCTGTGTATATGCACTCCTATGATGGAAACACCCTCGGCTGCCCCAACG] [+] EMBL BX628412 [ATANTCTAACCNTATCTATGGACGANAGCTGCTATGGCTACGATTTCCGGGAAGCTGTGTATATGCACTCCTATGATGGAAACACCCTCGGCTGCCCCAACG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5617#0 CCGCCCACGCGTCCGAAAATGGCGAAAGAAAACAGGAATAAGCAGCAACGCAAGTGAAAT 60 consensus_5617#1 ------------------------------------------------------------ consensus_5617#0 AATCCGAAAAGCGCGATTAATAATGGAAATACCAGCCAAAAATATAGTGTCCGACGAAAC 120 consensus_5617#1 ------------------------------------------------------------ consensus_5617#0 ATTCTGCATCTGGAAAGGGTGTATTCTGAATAGTGTTGAAAATTCGCAACCGTTCGTGCA 180 consensus_5617#1 ------------------------------------------------------------ consensus_5617#0 TTGGAAGTCGCATAACTGTGGTCCACGAGTTGATGTTGTTGGTGGTGTTGGTGTGGCGGA 240 consensus_5617#1 ------------------------------------------------------------ consensus_5617#0 ACAAAAGATTTCGTGCTTAAGCACTCGAGTTTTCTCGACGTCGTCGAACAACGGGCAGTC 300 consensus_5617#1 ------------------------------------------------------------ consensus_5617#0 TGTTCTACGCGTAATTATGCCAATGTTATTGATGCTAAATTCGATCACGATGACTAAGAA 360 consensus_5617#1 ------------------------------------------------------------ consensus_5617#0 CGCACGTTTGGACTCTAATATCGTGACCGTGACGTCGCACCGCTGGGAATAATAGGAGAT 420 consensus_5617#1 ------------------------------------------------------------ consensus_5617#0 TTCCCCAGGTGGATTGCATCGCAATCGTTAGTGAAAATATTCTGTATATAGAAACCCGTT 480 consensus_5617#1 ------------------------------------------------------------ consensus_5617#0 CTGGCGGTGATACTAAAGATTCGTAGCAATAACAGTGTAAATATTCACCACGTACGCAAT 540 consensus_5617#1 ------------------------------------------------------------ consensus_5617#0 GCTGTCCGAACGAAAGCAACCTTACTACCCTTCGTCGGCTGGCGATATCAACGGTTCAGT 600 consensus_5617#1 ------------------------------------------------------------ consensus_5617#0 TCCGCCCATGAAGGAGGCTGCATTTGATGAATGGTCAAAACATCGACTTCCGCAGCACAG 660 consensus_5617#1 ------------------------------------------------------------ consensus_5617#0 CTATTCCATTACAGATGGTAGCGAAAAGCTAGCCGATCTTAAGATGGGTGCCTCTAAATC 720 consensus_5617#1 ------------------------------------------------------------ consensus_5617#0 TCCCGCGGTTGCTGTGTTAGCGGCACTCAAGGGCACCTTTTTAAATATCGTCAGCTGGTC 780 consensus_5617#1 ------------------------------------------------------------ consensus_5617#0 AGCTGGTCAACTGTCTGTTCTTAACGGAACGAAACCAGAGGCACACGTATCGCAAACCAT 840 consensus_5617#1 ------------------------------------------------------------ consensus_5617#0 GGTGGAGAAAGAGGAGCAGGCGAAGAAAGTGACGAACGCCTCATCGTCGTGCATTCCTAT 900 consensus_5617#1 ------------------------------------------------------------ consensus_5617#0 ATTCGAAACGACCAGTAATGGAAAGGGTCAACTTACGGTGCCATTGGACTACAGTAGCAC 960 consensus_5617#1 ------------------------------------------------------------ consensus_5617#0 GGTCGACGATATTTCCATGACCCCAGCTGGTGTGTATTTCGAGGAAACAGCGCGTAGCGA 1020 consensus_5617#1 ------------------------------------------------------------ consensus_5617#0 TCGAAACGCGTCACGGCCTGGGCGGCGAAAGCGAAGGAAAGACACATCCAAAAGCAACCA 1080 consensus_5617#1 ------------------------------------------------------------ consensus_5617#0 GAACGTACATGCAGGTAGCGAGGGCGGCAGTAGCAAAGGCTGTGGTAAAAATCGAAAAGA 1140 consensus_5617#1 ------------------------------------------------------------ consensus_5617#0 TAAGAAACGACACGCGCTGCGTAGAGACATTCTGAGCGATAATCTAGCCTTATCTATGGA 1200 consensus_5617#1 --------------------------------------ATANTCTAACCNTATCTATGGA 22 *** **** ** ********** consensus_5617#0 CGATAGCTGCTATGGCTACGATTTCCGGGAAGCTGTGTATA-GCAATCCTGTGATGGAAA 1259 consensus_5617#1 CGANAGCTGCTATGGCTACGATTTCCGGGAAGCTGTGTATATGCACTCCTATGATGGAAA 82 *** ************************************* *** **** ********* consensus_5617#0 CACACTCG-CTGCCCCAACGATGNTTGTCGTCGAGCTTCAGCCCCGTCATCGACT 1313 consensus_5617#1 CACCCTCGGCTGCCCCAACG----------------------------------- 102 *** **** *********** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||