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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5641#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 809 fasta sequence
[GAATTCGACGAGGTGNNATATTGAGAACGTTTGCTAACCTTTCTTCATTCCTCCGCGATGAATCAAAAAGTGTCAACCGTGAACGATCCGGAATTGCAGGCCAAAGTAAAGAAAACGACTGAAAAA--ATCGGAAAACATGCACATCATCGCTAACGAGCCTAGTTTAGCGTTCTACCGCATCCAGGAGCACGTCCGGAAGGTAATCCCGCTCATAGTGGAGCGTCGCGCGGAGGTGGTTCAACTGCAGCAGGATTTACAGGGCAAGTGCTACGATATGGAGTACGCCATAGGTGCCGTGAAGGATATTGAGGCAGCCGATACGTCGTTGAAGAATGTCCAAGAATTGCTTAAGAATGCCATCTTTCTCAAGCAACAGCTAAAGTACGTGGAATCTAGACGACCGAAGAAAGACACCAACAGCTCCGTGTACAAACGGTTGTCGGCCCACATCACACTGGACCTGCCCGACCTTAACGATCTGTCCGGGGTGGTGCGGGAAACAACCAACCGGGTGGAGCACATGATGTCACAGGCGCGAAATTCGAACAGTAACATCAACAACAACCCTCCCGCGGGGACGGCCAACTCCACCGCAGGGCCAGCCGAGTTGCAACGGTCCTACACAACGCTACACTGAAGCCAAACGCTTGTCGTGGTTGCTTCGAAAAGTTACGCATCAGTTTCGTTCCTTTTCATTTTCCCTATCTGTGATGTTACTTTTGTTCACACCCTTGTTTTCTCGGCATTCCTCGAAGAGGAGATGGAAAATAGAGACAAAATTTAGTATTGTAGAGGACATCGTTCCGGGA]
[+] EMBL BX466202 [GAATTCGACGAGGTGNNATATTGAGAACGTTTGCTAACCTTTCTTCATTCCTCCGCGATGAATCAAAAAGTGTCAACCGTGAACGATCCGGAATTGCAGGCCAAAGTAAAGAAAACGACTGAAAAA ATCGGAAAACATGCACATCATCGCTAACGAGCCTAGTTTAGCGTTCTACCGCATCCAGGAGCACGTCCGGAAGGTAATCCCGCTCATAGTGGAGCGTCGCGCGGAGGTGGTTCAACTG ]
[+] EMBL BX608589 [ TGCAGGCCAAAGTAAAGAAAACGACTGAAAAAATATCGGAAAACATGCACATCATCGCTAACGAGCCTAGTTTAGCGTTCTACCGCATCCAGGAGCACGTCCGGAAGGTAATCCCGCTCATAGTGGAGCGTCGCGCGGAGGTGGTTCAACTGCAGCAGGATTTACAGGGCAAGTGCTACGATATGGAGTACGCCATAGGTGCCGTGAAGGATATTGAGGCAGCCGATACGTCGTTGAAGAATGTCCAAGAATTGCTTAAGAATGCCATCTTTCTCAAGCAACAGCTAAAGTACGTGGAATCTAGACGACCGAAGAAAGACACCAACAGCTCCGTGTACAAACGGTTGTCGGCCCACATCACACTGGACCTGCCCGACCTTAACGATCTGTCCGGGGTGGTGCGGGAAACAACCAACCGGGTGGAGCACATGATGTCACAGGCGCGAAATTCGAACAGTAACATCAACAACAACCCTCCCGCGGGGACGGCCAACTCCACCGCAGGGCCAGCCGAGTTGCAACGGTCCTACACAACGCTACACTGAAGCCAAACGCTTGTCGTGGTTGCTTCGAAAAGTTACGCATCAGTTTCGTTCCTTTTCATTTTCCCTATCTGTGATGTTACTTTTGTTCACACCCTTGTTTTCTCGGCATTCCTCGAAGAGGAGATGGAAAATAGAGACAAAATTTAGTATTGTAGAGGACATCGTTCCGGGA]
[+] EMBL BX612253 [ CAGGCGCGAAACCCGAACAGCAACATCAACAACAACCCTCCCGCGGGGACGGCCAACTCCACCGCAGGGCCAGCCGAGTCGCAACGGTCCCACACAACGCCACACcg ]
consensusID : consensus_5641#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 351 fasta sequence
[CCGCAAATATTCGTTCTGTTACTACTAAAAAAAAACAAATTTTCTTGTGTTTTATTGAGTACTTTTGCTAAACTTTCTTCATTCCTCCGCGATGAACCAAAAAGTGTCAACCGTGAACGATCCGGAATTGCAGGCCAAAGTGAAGAAAACGACTGAAAAAATATCGGAAAACATGCACATCATTGCTAACGAGCCTAGTTTAGCATTCTACCGCATCCAGGAGCACGTCCGGAAAGTAATCCCGCTCATAGTGGAGCGTCGCGCGGAGGTGGTTCAACTGCAGCAGGATTTACAGGGCAAGTGCTACGATATGGAGTACGCCATAGGTGCCGTGAAGGATATTGAGGCAGC]
[+] EMBL BM641744 [CCGCAAATATTCGTTCTGTTACTACTAAAAAAAAACAAATTTTCTTGTGTTTTATTGAGTACTTTTGCTAAACTTTCTTCATTCCTCCGCGATGAACCAAAAAGTGTCAACCGTGAACGATCCGGAATTGCAGGCCAAAGTGAAGAAAACGACTGAAAAAATATCGGAAAACATGCACATCATTGCTAACGAGCCTAGTTTAGCATTCTACCGCATCCAGGAGCACGTCCGGAAAGTAATCCCGCTCATAGTGGAGCGTCGCGCGGAGGTGGTTCAACTGCAGCAGGATTTACAGGGCAAGTGCTACGATATGGAGTACGCCATAGGTGCCGTGAAGGATATTGAGGCAGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5641#0 ------------------------------------GAATTCGACGAGGTGNNATATTGA 24
consensus_5641#1 CCGCAAATATTCGTTCTGTTACTACTAAAAAAAAACAAATTTTCTT--GTGTTTTATTGA 58
**** *** ******
consensus_5641#0 GAACGTTTGCTAACCTTTCTTCATTCCTCCGCGATGAATCAAAAAGTGTCAACCGTGAAC 84
consensus_5641#1 GTACTTTTGCTAAACTTTCTTCATTCCTCCGCGATGAACCAAAAAGTGTCAACCGTGAAC 118
* ** ******** ************************ *********************
consensus_5641#0 GATCCGGAATTGCAGGCCAAAGTAAAGAAAACGACTGAAAAAAT--CGGAAAACATGCAC 142
consensus_5641#1 GATCCGGAATTGCAGGCCAAAGTGAAGAAAACGACTGAAAAAATATCGGAAAACATGCAC 178
*********************** ******************** **************
consensus_5641#0 ATCATCGCTAACGAGCCTAGTTTAGCGTTCTACCGCATCCAGGAGCACGTCCGGAAGGTA 202
consensus_5641#1 ATCATTGCTAACGAGCCTAGTTTAGCATTCTACCGCATCCAGGAGCACGTCCGGAAAGTA 238
***** ******************** ***************************** ***
consensus_5641#0 ATCCCGCTCATAGTGGAGCGTCGCGCGGAGGTGGTTCAACTGCAGCAGGATTTACAGGGC 262
consensus_5641#1 ATCCCGCTCATAGTGGAGCGTCGCGCGGAGGTGGTTCAACTGCAGCAGGATTTACAGGGC 298
************************************************************
consensus_5641#0 AAGTGCTACGATATGGAGTACGCCATAGGTGCCGTGAAGGATATTGAGGCAGCCGATACG 322
consensus_5641#1 AAGTGCTACGATATGGAGTACGCCATAGGTGCCGTGAAGGATATTGAGGCAGC------- 351
*****************************************************
consensus_5641#0 TCGTTGAAGAATGTCCAAGAATTGCTTAAGAATGCCATCTTTCTCAAGCAACAGCTAAAG 382
consensus_5641#1 ------------------------------------------------------------
consensus_5641#0 TACGTGGAATCTAGACGACCGAAGAAAGACACCAACAGCTCCGTGTACAAACGGTTGTCG 442
consensus_5641#1 ------------------------------------------------------------
consensus_5641#0 GCCCACATCACACTGGACCTGCCCGACCTTAACGATCTGTCCGGGGTGGTGCGGGAAACA 502
consensus_5641#1 ------------------------------------------------------------
consensus_5641#0 ACCAACCGGGTGGAGCACATGATGTCACAGGCGCGAAATTCGAACAGTAACATCAACAAC 562
consensus_5641#1 ------------------------------------------------------------
consensus_5641#0 AACCCTCCCGCGGGGACGGCCAACTCCACCGCAGGGCCAGCCGAGTTGCAACGGTCCTAC 622
consensus_5641#1 ------------------------------------------------------------
consensus_5641#0 ACAACGCTACACTGAAGCCAAACGCTTGTCGTGGTTGCTTCGAAAAGTTACGCATCAGTT 682
consensus_5641#1 ------------------------------------------------------------
consensus_5641#0 TCGTTCCTTTTCATTTTCCCTATCTGTGATGTTACTTTTGTTCACACCCTTGTTTTCTCG 742
consensus_5641#1 ------------------------------------------------------------
consensus_5641#0 GCATTCCTCGAAGAGGAGATGGAAAATAGAGACAAAATTTAGTATTGTAGAGGACATCGT 802
consensus_5641#1 ------------------------------------------------------------
consensus_5641#0 TCCGGGA 809
consensus_5641#1 -------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||