These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5660#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 865 fasta sequence [CCGCTGGAGCGGCGGAACTGCAGCGCCCACCAGTGGTAGCAATGCGAACAGCACCGCCGGACTGAACAACAACGAGCCCGACACTGCCGGAGGAGGGACGGTGGGCGATGGGAAGAAGCGCTCTTCGCGTTCGCGGTCTAAATCGCTGTCGAAATCATCCCGCTCGAAATCGCGCTCGTTGTCCCGCTCGGTGTCGCGGTCGCGATCGCGCGGCTCCCGGTCCCGCTCCCGCACATCACAGTCGCGCTCGCGCTCCAAAACGCGCACGTCCCGGTCGCGTTCGCGCAGCCCCGCTTCCCGCTCGCGGTCACGTTCGCGCTCGCCTCACTCGCCGCACTATTCCACCGACAAGAGT---GGCGGCGGCGGCGGCGGCGGCACCAGAAGGACGTCGAAGAAGACGCGCCATCGCTCGCGCTCGCCGGCGAAGGTGTCGTCCTCGGGCAAGAAGAAATCCTCCCGCCACTACTCGTCCCGTTCGCCATCGCCCGACTCGCCGCAAAAGTACAAAAAGAGTGACAAAAAATACGATCGTCGCTCGGGCAAGGAGGACCGAAACAATGACAATCGCTACACTAACGGCGCAGATCGTGATCGCGGCGATCGCTCGAAGGGAATGAACCACACCAACTCGTTCGTGGTGGAACACTCTCGCCGGGATCGCGATCGCGACCGTGATCGAATGCGATCGGACAGTGGCAAGGTAGGTGGCGGTGGTGGTGGGTACGATCGAGACGACTACAGGCGTACCGAGAAGGATTACCGGGGCNATGGAAAGCACGACAAGTATGGCTCTAGTCGCCATAGCGATAGCAACAGTCGACATCGGTCATNCAAGCACGAACGCGATCGATCACGCGACCGTGAT] [+] EMBL BM590885 [CCGCTGGAGCGGCGGAACTGCAGCGCCCACCAGTGGTAGCAATGCGAACAGCACCGCCGGACTGAACAACAACGAGCCCGACACTGCCGGAGGAGGGACGGTGGGCGATGGGAAGAAGCGCTCTTCGCGTTCGCGGTCTAAATCGCTGTCGAAATCATCCCGCTCGAAATCGCGCTCGTTGTCCCGCTCGGTGTCGCGGTCGCGATCGCGCGGCTCCCGGTCCCGCTCCCGCACATCACAGTCGCGCTCGCGCTCCAAAACGCGCACGTCCCGGTCGCGTTCGCGCAGCCCCGCTTCCCGCTCGCGGTCACGTTCGCGCTCGCCTCACTCGCCGCACTATTCCACCGACAAGAGT GGCGGCGGCGGCGGCGGCGGCACCAGAAGGACGTCGAAGAAGACGCGCCATCGCTCGCGCTCGCCGGCGAAGGTGTCGTCCTCGGGCAAGAAGAAATCCTCCCGCCACTACTCGTCCCGTTCGCCATCGCCCGACTCGCCGCAAAAGTACAAAAAGAGTGACAAAAAATACGATCGTCGCTCGGGCAAGGAGGACCGAAACAATGACAATCGCTACACTAACGGCGCAGATCGTGATCGCGGCGATCGCTCGAAGGGAATGAACCACACCAACTCGTTCGTGGTGGAACACTCTCGCCGGGAT ] [+] EMBL BX623651 [ CATCCCGCTCGAAATCGCGCTCGTTGTCCCGCTCGGTGTCGCGGTCGCGATCGCGCGGCTCCCGGTCCCGCTCCCGCACATCACAGTCGNGNTCGCGCTCCAAAACGCGCACGTCCCGGTCGCGTTCGCGCAGCCCCGCTTCCCGCTCGCGGTCACGTTCGCGCTCGCCTCACTCGCCGCACTATTCCACCGACAAGAGTGGAGGCGGCGGCGGCGGCGGCGGCGCCAGAAGGACGTCGAAGAAGACGCGCCATCGCTCGCGCTCGCCGGCGAAGGTGTCGTCCTCGGGCAAGAAGAAATCCTCCCGCCACTACTCGTCCCGTTCGCCATCGCCCGACTCGCCGCAAAAGTACAAAAAGAGTGACAAAAAATACGATCGTCGCTCGGGCAAGGAGGACCGAAACAATGACAATCGCTACACTAACGGCGCAGATCGTGATCGCGGCGATCGCTCGAAGGGAATGAACCACACCAACTCGTTCGTGGTGGAACACTCTCGCCGGGACCGCGATCGCGACCGTGATCGAATGCGATCGGACAGTGGCAAGGTAGGTGGCGGTGGTGGTGGGTACGATCGAGACGACTACAGGCGTACCGAGAAGGATTACCGGGGCNATGGAAAGCACGACAAGTATGGCTCTAGTCGCCATAGCGATAGCAACAGTCGACATCGGTCATNCAAGCACGAACGCGATCGATCACGCGACCGTGAT] consensusID : consensus_5660#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 692 fasta sequence [CCGTGGAACTTCATGAACGACTCGTTCCGGACGGACGTGTTCGTGCGCTACCAGCCGGAAACGATCGCGTGCGCGTGCATCTATCTGACCGCGCGCAAGCACAACATTCCGCTGCCGAACAATCCGCCGTGGTTCGTGATATTTCGCGTCAGCGAGGACGACATGCTGGACGTCTGCTACCGCATCATGGCCCTGTACAAGCGGGGCAAACCGAACGCCGAGCTGCTGGAGGAAGCGGTCGAAGCGCTGAAGAAAAAGTACCAAGAGCAGCGCAAGAAGGACCGGCCCGAGGCGGCGCCGGCTCCGGCCCCGACCGTCATTACGGTGGACCGGAACAACGGGTCGCACAACGCTTGGGGCGGGTTCATTCAACGGGCCATCCCACTGCCCCTGAATCCAACTGGAGCGGCAGGCACTACGAACAGCAGCGCCAACAGTGGGACAGGTGGCGGAACTGCAGCGCCCAGCAGTGGCAGCAATGCGAACAGCACCGCCGGACTGAACAACAACGAGCCCGACACTGCCGGAGGAGGGACGGTGGGCGATGGGAAGATGCGCTCTTCGCGTTCGCGGTCTAAATCGCTGTCGAAATCATCCCGCTCGAAATTCGCGCTCGTTGTCCCTTCCCGGGATTCCCGGGTCGCGATCGCGCCGGCTCCCGGTCCCGCTCCCGCACATCACAGTCGCGCTCG] [+] EMBL BM633694 [CCGTGGAACTTCATGAACGACTCGTTCCGGACGGACGTGTTCGTGCGCTACCAGCCGGAAACGATCGCGTGCGCGTGCATCTATCTGACCGCGCGCAAGCACAACATTCCGCTGCCGAACAATCCGCCGTGGTTCGTGATATTTCGCGTCAGCGAGGACGACATGCTGGACGTCTGCTACCGCATCATGGCCCTGTACAAGCGGGGCAAACCGAACGCCGAGCTGCTGGAGGAAGCGGTCGAAGCGCTGAAGAAAAAGTACCAAGAGCAGCGCAAGAAGGACCGGCCCGAGGCGGCGCCGGCTCCGGCCCCGACCGTCATTACGGTGGACCGGAACAACGGGTCGCACAACGCTTGGGGCGGGTTCATTCAACGGGCCATCCCACTGCCCCTGAATCCAACTGGAGCGGCAGGCACTACGAACAGCAGCGCCAACAGTGGGACAGGTGGCGGAACTGCAGCGCCCAGCAGTGGCAGCAATGCGAACAGCACCGCCGGACTGAACAACAACGAGCCCGACACTGCCGGAGGAGGGACGGTGGGCGATGGGAAGATGCGCTCTTCGCGTTCGCGGTCTAAATCGCTGTCGAAATCATCCCGCTCGAAATTCGCGCTCGTTGTCCCTTCCCGGGATTCCCGGGTCGCGATCGCGCCGGCTCCCGGTCCCGCTCCCGCACATCACAGTCGCGCTCG] [+] EMBL BX601699 [ TTTATGAACGACTCATTCCGGACGGATGTGTTCGTGCGCTACCAGCCAGAAACGATCGCGTGCGCGTGCATCTATCTGACCGCGCGCAAGCACAACATTCCGCTGCCGAACAATCCGCCGTGGTTCGTGATATTTCGCGTCAGCGAGGACGACATGCTGGACGTCTG ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5660#0 CCGCTGGAGCGGCGGAACTGCAGCGCCCACCAGTGGTAGCAATGCGAACAGCACCGCCGG 60 consensus_5660#1 ------------------------------------------------------------ consensus_5660#0 ACTGAACAACAACGAGCCCGACACTGCCGGAGGAGGGACGGTGGGCGATGGGAAGAAGCG 120 consensus_5660#1 ------------------------------------------------------------ consensus_5660#0 CTCTTCGCGTTCGCGGTCTAAATCGCTGTCGAAATCATCCCGCTCGAAATCGCGCTCGTT 180 consensus_5660#1 -------------CCGTGGAACTTCATGAACGACTCGTTCCGGACGGACGTGTTCGTGCG 47 * ** ** * ** * ** * *** ** * * * * consensus_5660#0 GTCCCGCTCGGTGTCGCGGTCGCGATCGCGCGGCTCCCGGTCCCGCTCCCGCACATCACA 240 consensus_5660#1 CTACCAGCCGGAAACGATCGCGTGCGCGTGCATCTATCTGACC-GCGCGCAAGCACAACA 106 * ** *** ** ** * ** ** ** * * ** ** * * ** *** consensus_5660#0 GTCGCGCTCGCGCTCCAAAACGCGCACGTCCCGGTCGCGTTCGCGCAGCCCCGCTTCCCG 300 consensus_5660#1 TTC-CGCT---GCCGAACAATCCGCCGTGGTTCGTGATATTT-CGCGTCAGCGAGGACGA 161 ** **** ** * ** *** ** ** *** * ** * consensus_5660#0 CTCGCGGTCACGTTCGCGCTCGCCTCACT-CGCCGCACTATTCCACCGACAAGAGTGGCG 359 consensus_5660#1 CATGCTGG-ACGTCTGCTACCGCATCATGGCCCTGTACAAGCGGGGCAAACCGAACGCCG 220 * ** * **** ** *** *** * * * ** * * * ** * ** consensus_5660#0 GCGGCGGCGGCGGCGGCACCAGAAGGACGTCGAAGAAGACGCGCCATCGCTCGCGCTCGC 419 consensus_5660#1 A-GCTGCTGGAGGAAGCGGTCGAAG--CGCTGAAGAAAAAGTACCAAGAGCAGCGC---- 273 * * ** ** ** **** ** ****** * * *** **** consensus_5660#0 CGGCGAAGGTGTCGTCCTCGGGCAAGAAGAAATCCTCCCGCCACTACTCGTCCCGTTCGC 479 consensus_5660#1 --AAGAAGG-ACCGGCCCGAGGCGGCGCCGGCTCCGGCCCCGACCGTCATTACGGTGGAC 330 ***** ** ** *** *** ** * ** * * ** * consensus_5660#0 CATCGCCCGACTCGCCGCAAAAGTACAAAAAGAGTGACAAAAAATACGATCGTCGCTCGG 539 consensus_5660#1 CG--GAACAACGGGTCGCACAA-CGCTTGGGGCGGGTTCATTCAACGGGCCATCCCACTG 387 * * * ** * **** ** * * * * * * * * ** * * * consensus_5660#0 GCAAGGAGGACCGAAACAATGACAATCGCTAC-ACTAACGGCGCAGATCGTGATCGCGGC 598 consensus_5660#1 CCCCTGAATCCAACTGGAGCGGCAGGCACTACGAACAGCAGCGCCAACAGTGGGACAGGT 447 * ** * * * ** * **** * * * **** * *** ** consensus_5660#0 GATCGCTCGAAGGGAATGAACCACACCAACTCGTTCGTGGTG-GAACACTCTCGCCGG-- 655 consensus_5660#1 GGC--------GGAACTGCAGCGCCCAGCAGTGGCAGCAATGCGAACAGCACCGCCGGAC 499 * ** * ** * * * * * * ** ***** ****** consensus_5660#0 -GATCGCGATCGCGACCGTGATCGAATGCGATCGGACAGTGGC--AAGGTAGGTGGCGGT 712 consensus_5660#1 TGAACAACAACGAGCCCGACACTGCCGGAGGAGGGACGGTGGGCGATGGGAAGATGCGCT 559 ** * * ** * *** * * * * **** **** * ** * * *** * consensus_5660#0 GGTGGTGGGTACGATCGAGACGACTACAGGCGT-ACCGAGAAGGATTACCGGGGCNATGG 771 consensus_5660#1 CTTCGCGTTCGCGGTCTAAATCGCTGTCGAAATCATCCCGCTCGAAATTCGCGCTCGTTG 619 * * * ** ** * * ** * * * * * ** ** * * * consensus_5660#0 AAAGCACGACAAGTATGGCTCTAGTCGCCATAGCGATAGCAACAGTCGACATCGGTCATN 831 consensus_5660#1 T---CCCTTCCCGGGATTCCCGGGTCGCGATCGCGCCGGCTCC---CGGTCCCGCTCCCG 673 * * * * * * ***** ** *** ** * ** ** ** consensus_5660#0 CA-AGCACGAACGCGATCGATCACGCGACCGTGAT 865 consensus_5660#1 CACATCACAGTCGCGCTCG---------------- 692 ** * *** **** *** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||