These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5683#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 664 fasta sequence [AATCGNGCACGAGGNGTACGTGTTCCGATGTTTAGGAATGCGGCTTGGGTATCTACGATGACGTCAAAGGATTTGACGTGGATAAGCAGTACGAACGAGTGAAAGACCGGCTGTCGGTTGACGAGGACACATACAAGCGTGGCGTTAAGAACTGCATCAGGAATGTACTGCGAGGCCGTACGCTGAACAACTGCGAAAAAGCTTACCTAATCTTAAATCAGTGTCAGGGGTAACACCATTACGAATAGCCTAAATCAGCAACTTAACGAAATACGCTGGTAATTAAATGTGTTATGAATTGTTTCTCTCTTGAAGCAAATGGTTTCTATTGTGTGTGGTGGTTGGTTGTTTCTATATGTTAGAAATTGGTTCTTATGTTTTTGTTTATCACTATTGTATCACAACACAAGTAAGACAAAAGGTTTCACGCAGTTCGTTTGTGAAACAAGTTAATCAAGTTAAACCAGTTTACTGTAGAGCACTGTGTTTTGCGTATGAGGGTCTATCGGTATTCGTCGTTATTATGAATGATCTGAGTAACTGTAATTGGCGTACAAATTTGCAATACTCTTATGTTTGAAAGTGTAAGGTACACGAAAAACACTAAAGGTTTATTCAAATGTGCCTCTTATGTTTCACAAGCTATCACCGAAAAACCAATTTA] [+] EMBL BX469474 [AATCGNGCACGAGGNGTACGTGTTCCGATGTTTAGGAATGCGGCTTGGGTATCTACGATGACGTCAAAGGATTTGACGTGGATAAGCAGTACGAACGAGTGAAAGACCGGCTGTCGGTTGACGAGGACACATACAAGCGTGGCGTTAAGAACTGCATCAGGAATGTACTGCGAGGCCGTACGCTGAACAACTGCGAAAAAGCTTACCTAATCTTAAATCAGTGTCAGGGGTAACACCATTACGAATAGCCTAAATCAGCAACTTAACGAAATACGCTGGTAATTAAATGTGTTATGAATTGTTTCTCTCTTGAAGCAAATGGTTTCTATTGTGTGTGGTGGTTGGTTGTTTCTATATGTTAGAAATTGGTTCTTATGTTTTTGTTTATCACTATTGTATCACAACACAAGTAAGACAAAAGGTTTCACGCAGTTCGTTTGTGAAACAAGTTAATCAAGTTAAACCAGTTTACTGTAGAGCACTGTGTTTTGCGTATGAGGGTCTATCGGTATTCGTCGTTATTATGAATGATCTGAGTAACTGTAATTGGCGTACAAATTTGCAATACTCTTATGTTTGAAAGTGTAAGGTACACGAAAAACACTAAAGGTTTATTCAAATGTGCCTCTTATGTTTCACAAGCTATCACCGAAAAACCAATTTA] consensusID : consensus_5683#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 645 fasta sequence [CCGCTTTTATTCAACAGCATGGCACCTGTCAGATATCATTTCGTGCTGTGGCTATTAATTCTGATTGGCGTTAGTAGTCTAGTACCGCCTGGCGAGTGCTTGGACATATCTAAGGTTACGCTGGATGCTGCATTCTATCCCCTGTTTGGTTGTGCTCGCGATTTGGTTGTCCCCGAGGATTTAATCGAGCTGTACAAGAAACGCATCTTTCCCGACGATCAGTTAACATGCTGCGTGTTCCGATGTTTAGGAATGCGGCTTGGTATCTACGATGACGTCAAAGGATTTGACGTGGATAAGCAGTACGAACGAGTGAAAGACCGGCTGTCGGTTGACGAGGACACATACAAGCGTGGCGTTAAGAACTGCATCAGGAATGTACTGCGAGGCCGTACGCTGAACAACTGCGAAAAAGCTTACCTAATCTTAAATCAGTGTCAGGGTAACACCATTACGAATAGCCTAAATCAGCAACTTAACGAAATACGCTGTAATTAAATGTGTTATGAATTGTTTCTCTCTTGAAGCAAATGGTTTCTATTGTGTGTGGGGGGGTTGGGTTGTTTCTTTTGTTAGAAATTGGGTCCTTTGGTTTTTGGTTTCACTATTGTATCACAACACAAGTAAGACAAAGGGTTCAGCAGT] [+] EMBL BM593347 [CCGCTTTTATTCAACAGCATGGCACCTGTCAGATATCATTTCGTGCTGTGGCTATTAATTCTGATTGGCGTTAGTAGTCTAGTACCGCCTGGCGAGTGCTTGGACATATCTAAGGTTACGCTGGATGCTGCATTCTATCCCCTGTTTGGTTGTGCTCGCGATTTGGTTGTCCCCGAGGATTTAATCGAGCTGTACAAGAAACGCATCTTTCCCGACGATCAGTTAACATGCTGCGTGTTCCGATGTTTAGGAATGCGGCTTGGTATCTACGATGACGTCAAAGGATTTGACGTGGATAAGCAGTACGAACGAGTGAAAGACCGGCTGTCGGTTGACGAGGACACATACAAGCGTGGCGTTAAGAACTGCATCAGGAATGTACTGCGAGGCCGTACGCTGAACAACTGCGAAAAAGCTTACCTAATCTTAAATCAGTGTCAGGGTAACACCATTACGAATAGCCTAAATCAGCAACTTAACGAAATACGCTGTAATTAAATGTGTTATGAATTGTTTCTCTCTTGAAGCAAATGGTTTCTATTGTGTGTGGGGGGGTTGGGTTGTTTCTTTTGTTAGAAATTGGGTCCTTTGGTTTTTGGTTTCACTATTGTATCACAACACAAGTAAGACAAAGGGTTCAGCAGT] [+] EMBL BX626221 [ TCAACAGCATGGCACCTGTCAGATATCATTTCGTGCTGTGGCTATTAATTCTGATTGGCGTTAGTAGTCTAGTACCGCCTGGCGAGTGCTTGGACATATCTAAGGTTACGCTGGATGCTGCATTCTATCCCCTGTTTGGTTGTGCTCGCGATTTGGTTGTCCCCGAGGATTTAATCGAGCTGTACAAGAAACGCATCTTTCCCGACGATCAGTTAACATGCTGCGTGTTCCGATGTTTAGGAATGCGGCTTGGTATCTACGATGACGTCAAAGGATTTGACGTGGATAAGCAGTACGAACGAGTGAAAGACCGGCTGTCGGTTGACGAGGACACATACAAGCGTGGCGTTAAGAACTGCATCAGGAATGTACTGCGAGGCCGTACGCTGAACAACTGCGAAAAAGCTTACCTAATCTTAAATCAGTGTCAGGGTAACACCATTACGAATAGCCTAAATCAGCAACTTAACGAAATACGCTGTAATTAAATGTGTTATGAATTGTTTCTCTCTTGAAG ] [+] EMBL BX622693 [ AGATATCATTTCGTGCTGTGGCTATTAATTCTGATTGGCGTTAGTAGTCTAGTACCGCCTGGCGAGTGCTTGGACATATCTAAGGTTACGCTGGATGCTGCATTCTATCCCCTGTTTGGTTGTGCTCGCGATTTGGTTGTCCCCGAGGATTTAATCGAGCTGTACAAGAAACGCATCTTTCCCGACGATCAGTTAACATGCTGCGTGTTCCGATGTTTAGGAATGCGGCTTGGTATCTACGATGACGTCAAAGGATTTGACGTGGATAAGCAGTACGAACGAGTGAAAGACCGGCTGTCGGTTGACGAGGACACATACAAGCGTGGCGTTAAGAACTGCATCAGGAATGTACTGCGAGGCCGTACGCTGAACAACTGCGAAAAAGCTTACCTAATCTTAAATCAGTGTCAGGGTAACACCATTACGAATAGCCTAAATCAGCAACTTAACGAAATACGCTGTAATTAAATGTGTTATGAATTGTTTCTCTCTTGAAGCAAATGGTTTCTA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5683#0 ------------------------------------------------------------ consensus_5683#1 CCGCTTTTATTCAACAGCATGGCACCTGTCAGATATCATTTCGTGCTGTGGCTATTAATT 60 consensus_5683#0 ------------------------------------------------------------ consensus_5683#1 CTGATTGGCGTTAGTAGTCTAGTACCGCCTGGCGAGTGCTTGGACATATCTAAGGTTACG 120 consensus_5683#0 ------------------------------------------------------------ consensus_5683#1 CTGGATGCTGCATTCTATCCCCTGTTTGGTTGTGCTCGCGATTTGGTTGTCCCCGAGGAT 180 consensus_5683#0 ------------------------------------AATCGNGCACGAGGNGTACGTGTT 24 consensus_5683#1 TTAATCGAGCTGTACAAGAAACGCATCTTTCCCGACGATCAGTTAACATGC-TGCGTGTT 239 *** * * * * ****** consensus_5683#0 CCGATGTTTAGGAATGCGGCTTGGGTATCTACGATGACGTCAAAGGATTTGACGTGGATA 84 consensus_5683#1 CCGATGTTTAGGAATGCGGCTTGG-TATCTACGATGACGTCAAAGGATTTGACGTGGATA 298 ************************ *********************************** consensus_5683#0 AGCAGTACGAACGAGTGAAAGACCGGCTGTCGGTTGACGAGGACACATACAAGCGTGGCG 144 consensus_5683#1 AGCAGTACGAACGAGTGAAAGACCGGCTGTCGGTTGACGAGGACACATACAAGCGTGGCG 358 ************************************************************ consensus_5683#0 TTAAGAACTGCATCAGGAATGTACTGCGAGGCCGTACGCTGAACAACTGCGAAAAAGCTT 204 consensus_5683#1 TTAAGAACTGCATCAGGAATGTACTGCGAGGCCGTACGCTGAACAACTGCGAAAAAGCTT 418 ************************************************************ consensus_5683#0 ACCTAATCTTAAATCAGTGTCAGGGGTAACACCATTACGAATAGCCTAAATCAGCAACTT 264 consensus_5683#1 ACCTAATCTTAAATCAGTGTCAGGG-TAACACCATTACGAATAGCCTAAATCAGCAACTT 477 ************************* ********************************** consensus_5683#0 AACGAAATACGCTGGTAATTAAATGTGTTATGAATTGTTTCTCTCTTGAAGCAAATGGTT 324 consensus_5683#1 AACGAAATACGCTG-TAATTAAATGTGTTATGAATTGTTTCTCTCTTGAAGCAAATGGTT 536 ************** ********************************************* consensus_5683#0 TCTATTGTGTGTGGTGG---TTGGTTGTTTCTATATGTTAGAAATTGGTTCTTATGTTTT 381 consensus_5683#1 TCTATTGTGTGTGGGGGGGTTGGGTTGTTTCT-TTTGTTAGAAATTGGGTCCTTTGGTTT 595 ************** ** * ********** * ************* ** * ** *** consensus_5683#0 TGTTTATCACTATTGTATCACAACACAAGTAAGACAAAAGGTTTCACGCAGTTCGTTTGT 441 consensus_5683#1 TTGGTTTCACTATTGTATCACAACACAAGTAAGACAAAGGGTTC--AGCAGT-------- 645 * * ******************************** **** ***** consensus_5683#0 GAAACAAGTTAATCAAGTTAAACCAGTTTACTGTAGAGCACTGTGTTTTGCGTATGAGGG 501 consensus_5683#1 ------------------------------------------------------------ consensus_5683#0 TCTATCGGTATTCGTCGTTATTATGAATGATCTGAGTAACTGTAATTGGCGTACAAATTT 561 consensus_5683#1 ------------------------------------------------------------ consensus_5683#0 GCAATACTCTTATGTTTGAAAGTGTAAGGTACACGAAAAACACTAAAGGTTTATTCAAAT 621 consensus_5683#1 ------------------------------------------------------------ consensus_5683#0 GTGCCTCTTATGTTTCACAAGCTATCACCGAAAAACCAATTTA 664 consensus_5683#1 ------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||