cluster # 5687

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Anopheles gambiae
cluster # 5687 cluster # 5687 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5687#0 length = 708 sequences # 3

consensus_5687#1 length = 643 sequences # 1

consensusID : consensus_5687#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 708
fasta sequence

                              [CCGCTGTATTTCCTTCGCATTGTACCGGGGAGTTCATGCCTTTCTATGTTTCTTGGATAAAGTACAGAAATTTACATTTAGTTTTCTTTTGCCCGCGTTGTACTGTTTCTATCATGTCCCGTGTGACCAAGATTAAACATGTGCTCAAGGAACAGGAAGCGGACGACTTCGATGTGCCTAAAGAAAACCAACAAATCGTGCGCATTGTCGCTAGCCGGGGCAACAACCTGCACGAGGTGGAAACGGCACAGGACGGCGAGGAGCGGTTCCTGGTCTCGATGCCGGTCAAGTTTCGTAAAAATGTGTGGATCAAGCGTGGCAATTTCGTGCTGGTGGAACCGATCGAGGAAGGCAACAAGGTGAAGGCTGAAATTTGCCGCATCCTCACCCCGGAACACATCAAGGTGTTCGAAAAGGAAGGCGTTTGGCCGCGAAAGTTTAGCAGAAAGCGCGAGCTGGAAGATGATTTGGATGAGGATGGGCTATTCCGAAATACGAATCGCAAATTTCTAGCCCAGAGCTCGGACGATGATGATGATGATGAGGACGATGAGGACGATGACGACGATGACGACGATGAAGAGGAAAATGAAGATGACGACCAAGAGGAGGTGGAAAAA-CCGGAGGAAGGTGAAAAT-GCCGCGTCAAGGGTAGCCAATAACGGACAG-AATTATCCTCGATGGACCGATGAGCCGAAAACAATCGATT]

[+] EMBL BM615802             [CCGCTGTATTTCCTTCGCATTGTACCGGGGAGTTCATGCCTTTCTATGTTTCTTGGATAAAGTACAGAAATTTACATTTAGTTTCCTTTTGCCCGCGTTCTACTGTTTCTATCATGTCCCGTGTTACCAAGATTAAACATGTTCTCAAGGAACAGGAAGCGGACGACTTCGATGTGCCCAAAGAAAACCAACAAATCGTGCGCATTGTCGCTAGCCGGGGCAACAACCTGCACGAGGTGGAAACGGCACAGGACGGCGAGGAGCGGTTCCTGGTCTCGATGCCGGTCAAGTTTCGTAAAAATGTGTGGATCAAGCGTGGCAATTTCGTGCTGGTGGAACCGATCGAGGAAGGCAACAAGGTGAAGGCTGAAATTTGCCGCATCCTCACCCCGGAACACATCAAGGTGTTCGAAAAGGAAGGCGTTTGGCCGCGAAAGTTTAGCAGAAAGCGCGAGCTGGAAGATGATTTGGATGAGGATGGGCTATTCCGAAATACGAATCGCAAATTTCTAGCCCAGAGCTCGGACGATGATGATGATGAT      GATGAGGACGATGAGGATGATGACGACGATGAAGAGGAAAATGAAGAGGACGACCAAGAGGAGGTGGAAAAA CCGGAGGAAGGTGAAAATGGCCGCGTCAAGGGCAACCAATAACGGACAG AATTATCCTCGATGG                         ]
[+] EMBL BM635112             [                     ccgCCGGGGAGTTCAAGTCTTTCTATGTTTCTTGGATAAAGTACAGAAATTTACATTTAGTTTTCTTTTGCCCGCGTTGTACTGTTTCTATCATGTCCCGTGTGACCAAGATTAAACATGTGCTCAAGGAACAGGAAGCGGACGACTTCGATGTGCCTAAAGAAAACCAACAAATCGTGCGCATTGTCGCTAGCCGGGGCAACAACCTGCACGAGGTGGAAACGGCACAGGACGGCGAGGAGCGGTTCCTGGTCTCGATGCCGGTCAAGTTTCGTAAAAATGTGTGGATCAAGCGTGGCAATTTCGTGCTGGTGGAACCGATCGAGGAAGGCAACAAGGTGAAGGCTGAAATTTGCCGCATCCTCACCCCGGAACACATCAAGGTGTTCGAAAAGGAAGGCGTTTGGCCGCGAAAGTTTAGCAGAAAGCGCGAGCTGGAAGATGATTTGGATGAGGATGGGCTATTCCGAAATACGAATCGCAAATTTCTAGCCCAGAGCTCGGACGATGATGATGATGATGAGGACGATGAGGACGATGACGACGATGACGACGATGAAGAGGAAAATGAAGATGACGACCAAGAGGAGGTGGAAAAACCCGGAGGAAAGTGAAAAT GCCGCGTCAAGGGTAGCCAATAACGGACAG A                                       ]
[+] EMBL BM594550             [                                                ccgCTTGGATAAAGTACAGAAATTTACATTTAGTTTTCTTTTGCCCGCGTTGTACTGTTTCTATCATGTCCCGTGTGACCAAGATTAAACATGTGCTCAAGGAACAGGAAGCGGACGACTTCGATGTGCCTAAAGAAAACCAACAAATCGTGCGCATTGTCGCTAGCCGGGGCAACAACCTGCACGAGGTGGAAACGGCACAGGACGGCGAGGAGCGGTTCCTGGTCTCGATGCCGGTCAAGTTTCGTAAAAATGTGTGGATCAAGCGTGGCAATTTCGTGCTGGTGGAACCGATCGAGGAAGGCAACAAGGTGAAGGCTGAAATTTGCCGCATCCTCACCCCGGAACACATCAAGGTGTTCGAAAAGGAAGGCGTTTGGCCGCGAAAGTTTAGCAGAAAGCGCGAGCTGGAAGATGATTTGGATGAGGATGGGCTATTCCGAAATACGAATCGCAAATTTCTAGCCCAGAGCTCGGACGATGATGATGATGATGAGGACGATGAGGACGATGACGACGATGACGACGATGAAGAGGAAAATGAAGATGACGACCAAGAGGAGGTGGAAAAA CCGGAGGAAGGTGAAAAT GCCGCGTCAAGGGTAGCCAATAACGGACAGAAATTGTCCTCGATGGACCGATGAGCCGAAAACAATCGATT]




>consensus_5687#0
CCGCTGTATTTCCTTCGCATTGTACCGGGGAGTTCATGCCTTTCTATGTTTCTTGGATAA
AGTACAGAAATTTACATTTAGTTTTCTTTTGCCCGCGTTGTACTGTTTCTATCATGTCCC
GTGTGACCAAGATTAAACATGTGCTCAAGGAACAGGAAGCGGACGACTTCGATGTGCCTA
AAGAAAACCAACAAATCGTGCGCATTGTCGCTAGCCGGGGCAACAACCTGCACGAGGTGG
AAACGGCACAGGACGGCGAGGAGCGGTTCCTGGTCTCGATGCCGGTCAAGTTTCGTAAAA
ATGTGTGGATCAAGCGTGGCAATTTCGTGCTGGTGGAACCGATCGAGGAAGGCAACAAGG
TGAAGGCTGAAATTTGCCGCATCCTCACCCCGGAACACATCAAGGTGTTCGAAAAGGAAG
GCGTTTGGCCGCGAAAGTTTAGCAGAAAGCGCGAGCTGGAAGATGATTTGGATGAGGATG
GGCTATTCCGAAATACGAATCGCAAATTTCTAGCCCAGAGCTCGGACGATGATGATGATG
ATGAGGACGATGAGGACGATGACGACGATGACGACGATGAAGAGGAAAATGAAGATGACG
ACCAAGAGGAGGTGGAAAAACCGGAGGAAGGTGAAAATGCCGCGTCAAGGGTAGCCAATA
ACGGACAGAATTATCCTCGATGGACCGATGAGCCGAAAACAATCGATT

consensusID : consensus_5687#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 643
fasta sequence

                              [GGCAAGATCCCCACGATGTGAGGAGTCAAGCCTTTCTATGCTTTCTTGGATAAAGTACAGAAATTTACATTTAGTTTCCTTTTGCCCGCGTTCTACTGTTTCTATCATGTCCCGTGTTACCAAGATTAAACATGTGCTCAAGGAACAGGAAGCGGACGACTTCGATGTGCCCAAAGAAAACCAACAAATCGTGCGCATTGTCGCTAGCCGGGGCAACAACCTGCACGAGGTGGAAACGGCACAGGACGGCGAGGAGCGATTCCTGGTCTCGATGCCGGTCAAGTTTCGTAAAAATGTGTGGATCAAGCGTGGCAATTTCGTGCTGGTGGAACCGATCGAGGAAGGCAACAAGGTGAAGGCTGAAATTTGCCGCATCCTCACCCCGGAACACATCAAGGTGTTCGAAAAGGAAGGCGTTTNGGCCGCGAAAGTTTAGCAGAAAGCGCGAGCTGGAAGATGATTTGGATGAGGATGGGCTATTCCGAAATACGGAATCGCAANATTTCTAGCCCAGAGCTCGGACGATGATGATGCATGATGATGAGGGACGGATGNAGGCATGGATGACCGGACGATGGACAGAGGACAAATGACGAGGGACGACCCAGGAGGAGGTGGGAAAAACCGGAGGAAGGTGACANAT]

[+] EMBL BX468195             [GGCAAGATCCCCACGATGTGAGGAGTCAAGCCTTTCTATGCTTTCTTGGATAAAGTACAGAAATTTACATTTAGTTTCCTTTTGCCCGCGTTCTACTGTTTCTATCATGTCCCGTGTTACCAAGATTAAACATGTGCTCAAGGAACAGGAAGCGGACGACTTCGATGTGCCCAAAGAAAACCAACAAATCGTGCGCATTGTCGCTAGCCGGGGCAACAACCTGCACGAGGTGGAAACGGCACAGGACGGCGAGGAGCGATTCCTGGTCTCGATGCCGGTCAAGTTTCGTAAAAATGTGTGGATCAAGCGTGGCAATTTCGTGCTGGTGGAACCGATCGAGGAAGGCAACAAGGTGAAGGCTGAAATTTGCCGCATCCTCACCCCGGAACACATCAAGGTGTTCGAAAAGGAAGGCGTTTNGGCCGCGAAAGTTTAGCAGAAAGCGCGAGCTGGAAGATGATTTGGATGAGGATGGGCTATTCCGAAATACGGAATCGCAANATTTCTAGCCCAGAGCTCGGACGATGATGATGCATGATGATGAGGGACGGATGNAGGCATGGATGACCGGACGATGGACAGAGGACAAATGACGAGGGACGACCCAGGAGGAGGTGGGAAAAACCGGAGGAAGGTGACANAT]




>consensus_5687#1
GGCAAGATCCCCACGATGTGAGGAGTCAAGCCTTTCTATGCTTTCTTGGATAAAGTACAG
AAATTTACATTTAGTTTCCTTTTGCCCGCGTTCTACTGTTTCTATCATGTCCCGTGTTAC
CAAGATTAAACATGTGCTCAAGGAACAGGAAGCGGACGACTTCGATGTGCCCAAAGAAAA
CCAACAAATCGTGCGCATTGTCGCTAGCCGGGGCAACAACCTGCACGAGGTGGAAACGGC
ACAGGACGGCGAGGAGCGATTCCTGGTCTCGATGCCGGTCAAGTTTCGTAAAAATGTGTG
GATCAAGCGTGGCAATTTCGTGCTGGTGGAACCGATCGAGGAAGGCAACAAGGTGAAGGC
TGAAATTTGCCGCATCCTCACCCCGGAACACATCAAGGTGTTCGAAAAGGAAGGCGTTTN
GGCCGCGAAAGTTTAGCAGAAAGCGCGAGCTGGAAGATGATTTGGATGAGGATGGGCTAT
TCCGAAATACGGAATCGCAANATTTCTAGCCCAGAGCTCGGACGATGATGATGCATGATG
ATGAGGGACGGATGNAGGCATGGATGACCGGACGATGGACAGAGGACAAATGACGAGGGA
CGACCCAGGAGGAGGTGGGAAAAACCGGAGGAAGGTGACANAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5687#0      CCGCTGTATTTCCTTCGCATTGTACCGGGGAGTTCATGCCTTTCTATG-TTTCTTGGATA 59
consensus_5687#1      ----GGCAAGATCCCCACGATGT---GAGGAGT-CAAGCCTTTCTATGCTTTCTTGGATA 52
                           * *    *  * *  ***   * ***** ** *********** ***********

consensus_5687#0      AAGTACAGAAATTTACATTTAGTTTTCTTTTGCCCGCGTTGTACTGTTTCTATCATGTCC 119
consensus_5687#1      AAGTACAGAAATTTACATTTAGTTTCCTTTTGCCCGCGTTCTACTGTTTCTATCATGTCC 112
                      ************************* ************** *******************

consensus_5687#0      CGTGTGACCAAGATTAAACATGTGCTCAAGGAACAGGAAGCGGACGACTTCGATGTGCCT 179
consensus_5687#1      CGTGTTACCAAGATTAAACATGTGCTCAAGGAACAGGAAGCGGACGACTTCGATGTGCCC 172
                      ***** ***************************************************** 

consensus_5687#0      AAAGAAAACCAACAAATCGTGCGCATTGTCGCTAGCCGGGGCAACAACCTGCACGAGGTG 239
consensus_5687#1      AAAGAAAACCAACAAATCGTGCGCATTGTCGCTAGCCGGGGCAACAACCTGCACGAGGTG 232
                      ************************************************************

consensus_5687#0      GAAACGGCACAGGACGGCGAGGAGCGGTTCCTGGTCTCGATGCCGGTCAAGTTTCGTAAA 299
consensus_5687#1      GAAACGGCACAGGACGGCGAGGAGCGATTCCTGGTCTCGATGCCGGTCAAGTTTCGTAAA 292
                      ************************** *********************************

consensus_5687#0      AATGTGTGGATCAAGCGTGGCAATTTCGTGCTGGTGGAACCGATCGAGGAAGGCAACAAG 359
consensus_5687#1      AATGTGTGGATCAAGCGTGGCAATTTCGTGCTGGTGGAACCGATCGAGGAAGGCAACAAG 352
                      ************************************************************

consensus_5687#0      GTGAAGGCTGAAATTTGCCGCATCCTCACCCCGGAACACATCAAGGTGTTCGAAAAGGAA 419
consensus_5687#1      GTGAAGGCTGAAATTTGCCGCATCCTCACCCCGGAACACATCAAGGTGTTCGAAAAGGAA 412
                      ************************************************************

consensus_5687#0      GGCGTTTGG-CCGCGAAAGTTTAGCAGAAAGCGCGAGCTGGAAGATGATTTGGATGAGGA 478
consensus_5687#1      GGCGTTTNGGCCGCGAAAGTTTAGCAGAAAGCGCGAGCTGGAAGATGATTTGGATGAGGA 472
                      ******* * **************************************************

consensus_5687#0      TGGGCTATTCCGAAATACG-AATCGCAAA-TTTCTAGCCCAGAGCTCGGACGATGATGAT 536
consensus_5687#1      TGGGCTATTCCGAAATACGGAATCGCAANATTTCTAGCCCAGAGCTCGGACGATGATGAT 532
                      ******************* ********  ******************************

consensus_5687#0      G-ATGATGAGGACGATGAGGACGATGACGACGATGAC--GACGATGAA--GAGGA-AAAT 590
consensus_5687#1      GCATGATGATGAGGG-ACGGATGNAGGCATGGATGACCGGACGATGGACAGAGGACAAAT 591
                      * ******* ** *    *** *  * *   ******  ******* *  ***** ****

consensus_5687#0      GAAGATG-ACGACC-AAGAGGAGGTGG-AAAAACCGGAGGAAGGTGA-AAATGCCGCGTC 646
consensus_5687#1      GACGAGGGACGACCCAGGAGGAGGTGGGAAAAACCGGAGGAAGGTGACANAT-------- 643
                      ** ** * ****** * ********** ******************* * **        

consensus_5687#0      AAGGGTAGCCAATAACGGACAGAATTATCCTCGATGGACCGATGAGCCGAAAACAATCGA 706
consensus_5687#1      ------------------------------------------------------------
                                                                                  

consensus_5687#0      TT 708
consensus_5687#1      --