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Anopheles gambiae
cluster # 5706 cluster # 5706       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5706#0 length = 1334 sequences # 3  
consensus_5706#1 length = 629 sequences # 1  

consensusID : consensus_5706#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1334
fasta sequence
                              [CCGCCCACGCGTCCGGTTGCATCCGCACCCCGGTGCCGGCTTTGTTTGTTAGACAACATCATACAACCCCGACGAACCTTGGTCTGCTGGGTTTGCGCCCACTTTGCGCCCGCCGTTTTGGGTACCGGATTTGGGTACAACCCCGGTGTAGGCGACCTGTGTGCTTGACCCGTGAAGGGGGCCGTGTGTGTGTGTGTGAGTGTTTTGCACCGGTGGTACAACTGCTGTGTTATCACCGCGTGATACGAGCCAACAGAACGTGCTTTAGGTGTGTAGAAGACCGTGTGCTGCAACCGTCCGCTGTATACTACCGATCGGCTACCGATCGTCTCACCGGCCGAGTTGATCGCGCTTGAGTGTTCGCAGGCAAGAGATTTCCCTCAAACACCGAACTCTTCAGAAGGGGTGCGTTTTAGCCAGAACCCGGAACTCGGATCTTACGCATTGAGCCTAAAAACATGTCGAACTCATACGCGACTGCCGGCGCACGGCCAACGTCACGATGGAAGCAGTTCATAAAGTCGAACCTGCTCACCTTTCTGACCGTGCTGGGCGTGTTCGGCGGCACTGCCCTCGGACTGACGCTCAAGAACTCGGCCGAACCGTGGACGCAGCGTGAGGTGATGTACATCCAGTATCCGGGCGATCTGTTCCTACGGATGCTGAAGTGTCTGATCGTGCCGCTGCTCGTCTCGTCGATCACCAGTGCGATCGGTTCGCTGGATTTGAGCATGTCGAAGAAGATCGCCTTCCGGGCGATCATCTACTACTTCACCACCACGGTCTGTGCCGTCATCTTGGGCATCATACTGGTCAGCACGATCCGGCCGGGTGCGGGCCGCGAGGTGAGCAACCTCGGTGGCAAGGCAACGACGCGGCAGGTCCTGACCGCCGACACGCTGCTTGATCTCGTCAGAAATCTATTCCCACCGAACATCATCCAGGCTACAATGTTCCAGTTCCGAACCATTCTTGTCCCTCCAGCCAATGCCACCGGTGTTCCATTGACCCAGTACAAGATCACGTCCGAGTTTACCGAGGGCACGAATGTGCTCGGTCTCGTCATGTTTAGCGTGGTGCTCGGCACCTGCATAGGCAAGATGCGCGAGAAGGGCAAGCCGCTGCTCGGGCTCTTTGAAACGCTCAGCGAAGCGATGATGATCATCACCTCGTGGGTGATCTGGATCTCGCCGATCGGTGTGCTGTTTCTGGTCGCGGCCAAGCTGCTGGAGATGGCGTCCTTCGTCGAGGTGCTGGGACAGCTGGGCTGGTACTTTATGACTGTGATGCTGGGGCTGATGCTGCACGGTTTCGGTACGATTTCGGTCATCTTC]

[+] EMBL BM634199             [CCGCCCACGCGTCCGGTTGCATCCGCACCCCGGTGCCGGCTTTGTTTGTTAGACAACATCATACAACCCCGACGAACCTTGGTCTGCTGGGTTTGCGCCCACTTTGCGCCCGCCGTTTTGGGTACCGGATTTGGGTACAACCCCGGTGTAGGCGACCTGTGTGCTTGACCCGTGAAGGGGGCCGTGTGTGTGTGTGTGAGTGTTTTGCACCGGTGGTACAACTGCTGTGTTATCACCGCGTGATACGAGCCAACAGAACGTGCTTTAGGTGTGTAGAAGACCGTGTGCTGCAACCGTCCGCTGTATACTACCGATCGGCTACCGATCGTCTCACCGGCCGAGTTGATCGCGCTTGAGTGTTCGCAGGCAAGAGATTTCCCTCAAACACCGAACTCTTCAGAAGGGGTGCGTTTTAGCCAGAACCCGGAACTCGGATCTTACGCATTGAGCCTAAAAACATGTCGAACTCATACGCGACTGCCGGCGCACGGCCAACGTCACGATGGAAGCAGTTCATAAAGTCGAACCTGCTCACCTTTCTGACCGTGCTGGGCGTGTTCGGCGGCACTGCCCTCGGACTGACGCTCAAGAACTCGGCCGAACCGTGGACGCAGCGTGAGGTGATGTACATCCAGTATCCGGGCGATCTGTTCCTACGGATGCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL BM596620             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ccgGGCCAACGTCACGATGGAAGCAGTTCATAAAGTCGAACCTGCTCACCTTTCTGACCGTGCTGGGCGTGTTCGGCGGCACTGCCCTCGGACTGACGCTCAAGAACTCGGCCGAACCGTGGACGCAGCGTGAGGTGATGTACATCCAGTATCCGGGCGATCTGTTCCTACGGATGCTGAAGTGTCTGATCGTGCCGCTGCTCGTCTCGTCGATCACCAGTGCGATCGGTTCGCTGGATTTGAGCATGTCGAAGAAGATCGCCTTCCGGGCGATCATCTACTACTTCACCACCACGGTCTGTGCCGTCATCTTGGGCATCATACTGGTCAGCACGATCCGGCCGGGTGCGGGCCGCGAGGTGAGCAACCTCGGTGGCAAGGCAACGACGCGGCAGGTCCTGACCGCCGACACGCTGCTTGATCTCGTCAGAAATCTATTCCCACCGAACATCATCCAGGCTACAATGTTCCAGTTCCGAACCATTCTTGTCCCTCCAGCCAATGCCACCGGTGTTCCATTGACCCAGTACAAGATCACGTCCGAGTTTACCGAGGGCACGAATGTGCTCGGTCTCGTCATGTTTAGCGTGGTGCTCGGCA                                                                                                                                                                                                                                                        ]
[+] EMBL BM638865             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ccgGTCATCTTGGGCATCATACTGGTCAGCACGATCCGGCCGGGTGCGGGCCGCGAGGTGAGCAACCTCGGTGGCAAGGCAACGACGCGGCAGGTCCTGACCGCCGACACGCTGCTTGATCTCGTCAGAAATCTATTCCCACCGAACATCATCCAGGCTACAATGTTCCAGTTCCGAACCATTCTTGTCCCTCCAGCCAATGCCACCGGTGTTCCATTGACCCAGTACAAGATCACGTCCGAGTTTACCGAGGGCACGAATGTGCTCGGTCTCGTCATGTTTAGCGTGGTGCTCGGCACCTGCATAGGCAAGATGCGCGAGAAGGGCAAGCCGCTGCTCGGGCTCTTTGAAACGCTCAGCGAAGCGATGATGATCATCACCTCGTGGGTGATCTGGATCTCGCCGATCGGTGTGCTGTTTCTGGTCGCGGCCAAGCTGCTGGAGATGGCGTCCTTCGTCGAGGTGCTGGGACAGCTGGGCTGGTACTTTATGACTGTGATGCTGGGGCTGATGCTGCACGGTTTCGGTACGATTTCGGTCATCTTC]


>consensus_5706#0 CCGCCCACGCGTCCGGTTGCATCCGCACCCCGGTGCCGGCTTTGTTTGTTAGACAACATC ATACAACCCCGACGAACCTTGGTCTGCTGGGTTTGCGCCCACTTTGCGCCCGCCGTTTTG GGTACCGGATTTGGGTACAACCCCGGTGTAGGCGACCTGTGTGCTTGACCCGTGAAGGGG GCCGTGTGTGTGTGTGTGAGTGTTTTGCACCGGTGGTACAACTGCTGTGTTATCACCGCG TGATACGAGCCAACAGAACGTGCTTTAGGTGTGTAGAAGACCGTGTGCTGCAACCGTCCG CTGTATACTACCGATCGGCTACCGATCGTCTCACCGGCCGAGTTGATCGCGCTTGAGTGT TCGCAGGCAAGAGATTTCCCTCAAACACCGAACTCTTCAGAAGGGGTGCGTTTTAGCCAG AACCCGGAACTCGGATCTTACGCATTGAGCCTAAAAACATGTCGAACTCATACGCGACTG CCGGCGCACGGCCAACGTCACGATGGAAGCAGTTCATAAAGTCGAACCTGCTCACCTTTC TGACCGTGCTGGGCGTGTTCGGCGGCACTGCCCTCGGACTGACGCTCAAGAACTCGGCCG AACCGTGGACGCAGCGTGAGGTGATGTACATCCAGTATCCGGGCGATCTGTTCCTACGGA TGCTGAAGTGTCTGATCGTGCCGCTGCTCGTCTCGTCGATCACCAGTGCGATCGGTTCGC TGGATTTGAGCATGTCGAAGAAGATCGCCTTCCGGGCGATCATCTACTACTTCACCACCA CGGTCTGTGCCGTCATCTTGGGCATCATACTGGTCAGCACGATCCGGCCGGGTGCGGGCC GCGAGGTGAGCAACCTCGGTGGCAAGGCAACGACGCGGCAGGTCCTGACCGCCGACACGC TGCTTGATCTCGTCAGAAATCTATTCCCACCGAACATCATCCAGGCTACAATGTTCCAGT TCCGAACCATTCTTGTCCCTCCAGCCAATGCCACCGGTGTTCCATTGACCCAGTACAAGA TCACGTCCGAGTTTACCGAGGGCACGAATGTGCTCGGTCTCGTCATGTTTAGCGTGGTGC TCGGCACCTGCATAGGCAAGATGCGCGAGAAGGGCAAGCCGCTGCTCGGGCTCTTTGAAA CGCTCAGCGAAGCGATGATGATCATCACCTCGTGGGTGATCTGGATCTCGCCGATCGGTG TGCTGTTTCTGGTCGCGGCCAAGCTGCTGGAGATGGCGTCCTTCGTCGAGGTGCTGGGAC AGCTGGGCTGGTACTTTATGACTGTGATGCTGGGGCTGATGCTGCACGGTTTCGGTACGA TTTCGGTCATCTTC



consensusID : consensus_5706#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 629
fasta sequence
                              [CCGCGCACCCCGGTGCCGGCTTTGTTTGTTAGACAACATCATACAACCCCGACGAACCTTGGTCTGCTGGGTTTGCGCCCACTTTGCGCCCGCCGTTTTGGGTACCGGATTTGGGTACAACCCCGGTGTAGGCGACCTGTGTGCTTGACCCGTGAAGGGGGCCGTGTGTGTGTGTGTGAGTGTTTTGCACCGGTGGTACAACTGCTGTGTTATCACCGCGTGATACGAGCCAACAGAACGTGCTTTAGATTTCCCTCAAACACCGAACTCTCCAGAAGGGGTGCGTTTTAGCCAGAACCCGGAACTCGGATCTTACGCATTGAGCCTAAAAACATGTCGAACTCATACGCGACTGCCGGCGCACGGCCAACGTCACGATGGAAGCAGTTCATAAAGTCGAACCTGCTCACCTTTCTGACCGTGCTGGGCGTGTTCGGCGGCACTGCGCTCGGTCTGACGCTCAAGAACTCGGCCGAACCGTGGACGCAGCGTGAGGTGATGTACATCCAGTATCCGGGCGATCTGTTCCTACGGATGCTGAAGTGTCTGATCGTGCCGCTGCTCGTCTCGTCGATCACCAGTGCGATCGGTTCGCTGGATTTGAGCATGTCGAAGAAGATCGCTTTCCG]

[+] EMBL BM655420             [CCGCGCACCCCGGTGCCGGCTTTGTTTGTTAGACAACATCATACAACCCCGACGAACCTTGGTCTGCTGGGTTTGCGCCCACTTTGCGCCCGCCGTTTTGGGTACCGGATTTGGGTACAACCCCGGTGTAGGCGACCTGTGTGCTTGACCCGTGAAGGGGGCCGTGTGTGTGTGTGTGAGTGTTTTGCACCGGTGGTACAACTGCTGTGTTATCACCGCGTGATACGAGCCAACAGAACGTGCTTTAGATTTCCCTCAAACACCGAACTCTCCAGAAGGGGTGCGTTTTAGCCAGAACCCGGAACTCGGATCTTACGCATTGAGCCTAAAAACATGTCGAACTCATACGCGACTGCCGGCGCACGGCCAACGTCACGATGGAAGCAGTTCATAAAGTCGAACCTGCTCACCTTTCTGACCGTGCTGGGCGTGTTCGGCGGCACTGCGCTCGGTCTGACGCTCAAGAACTCGGCCGAACCGTGGACGCAGCGTGAGGTGATGTACATCCAGTATCCGGGCGATCTGTTCCTACGGATGCTGAAGTGTCTGATCGTGCCGCTGCTCGTCTCGTCGATCACCAGTGCGATCGGTTCGCTGGATTTGAGCATGTCGAAGAAGATCGCTTTCCG]


>consensus_5706#1 CCGCGCACCCCGGTGCCGGCTTTGTTTGTTAGACAACATCATACAACCCCGACGAACCTT GGTCTGCTGGGTTTGCGCCCACTTTGCGCCCGCCGTTTTGGGTACCGGATTTGGGTACAA CCCCGGTGTAGGCGACCTGTGTGCTTGACCCGTGAAGGGGGCCGTGTGTGTGTGTGTGAG TGTTTTGCACCGGTGGTACAACTGCTGTGTTATCACCGCGTGATACGAGCCAACAGAACG TGCTTTAGATTTCCCTCAAACACCGAACTCTCCAGAAGGGGTGCGTTTTAGCCAGAACCC GGAACTCGGATCTTACGCATTGAGCCTAAAAACATGTCGAACTCATACGCGACTGCCGGC GCACGGCCAACGTCACGATGGAAGCAGTTCATAAAGTCGAACCTGCTCACCTTTCTGACC GTGCTGGGCGTGTTCGGCGGCACTGCGCTCGGTCTGACGCTCAAGAACTCGGCCGAACCG TGGACGCAGCGTGAGGTGATGTACATCCAGTATCCGGGCGATCTGTTCCTACGGATGCTG AAGTGTCTGATCGTGCCGCTGCTCGTCTCGTCGATCACCAGTGCGATCGGTTCGCTGGAT TTGAGCATGTCGAAGAAGATCGCTTTCCG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5706#0      CCGCCCACGCGTCCGGTTGCATCCGCACCCCGGTGCCGGCTTTGTTTGTTAGACAACATC 60
consensus_5706#1      --------------------CCGCGCACCCCGGTGCCGGCTTTGTTTGTTAGACAACATC 40
                                             *************************************

consensus_5706#0      ATACAACCCCGACGAACCTTGGTCTGCTGGGTTTGCGCCCACTTTGCGCCCGCCGTTTTG 120
consensus_5706#1      ATACAACCCCGACGAACCTTGGTCTGCTGGGTTTGCGCCCACTTTGCGCCCGCCGTTTTG 100
                      ************************************************************

consensus_5706#0      GGTACCGGATTTGGGTACAACCCCGGTGTAGGCGACCTGTGTGCTTGACCCGTGAAGGGG 180
consensus_5706#1      GGTACCGGATTTGGGTACAACCCCGGTGTAGGCGACCTGTGTGCTTGACCCGTGAAGGGG 160
                      ************************************************************

consensus_5706#0      GCCGTGTGTGTGTGTGTGAGTGTTTTGCACCGGTGGTACAACTGCTGTGTTATCACCGCG 240
consensus_5706#1      GCCGTGTGTGTGTGTGTGAGTGTTTTGCACCGGTGGTACAACTGCTGTGTTATCACCGCG 220
                      ************************************************************

consensus_5706#0      TGATACGAGCCAACAGAACGTGCTTTAGGTGTGTAGAAGACCGTGTGCTGCAACCGTCCG 300
consensus_5706#1      TGATACGAGCCAACAGAACGTGCTTTAG-------------------------------- 248
                      ****************************                                

consensus_5706#0      CTGTATACTACCGATCGGCTACCGATCGTCTCACCGGCCGAGTTGATCGCGCTTGAGTGT 360
consensus_5706#1      ------------------------------------------------------------
                                                                                  

consensus_5706#0      TCGCAGGCAAGAGATTTCCCTCAAACACCGAACTCTTCAGAAGGGGTGCGTTTTAGCCAG 420
consensus_5706#1      -------------ATTTCCCTCAAACACCGAACTCTCCAGAAGGGGTGCGTTTTAGCCAG 295
                                   *********************** ***********************

consensus_5706#0      AACCCGGAACTCGGATCTTACGCATTGAGCCTAAAAACATGTCGAACTCATACGCGACTG 480
consensus_5706#1      AACCCGGAACTCGGATCTTACGCATTGAGCCTAAAAACATGTCGAACTCATACGCGACTG 355
                      ************************************************************

consensus_5706#0      CCGGCGCACGGCCAACGTCACGATGGAAGCAGTTCATAAAGTCGAACCTGCTCACCTTTC 540
consensus_5706#1      CCGGCGCACGGCCAACGTCACGATGGAAGCAGTTCATAAAGTCGAACCTGCTCACCTTTC 415
                      ************************************************************

consensus_5706#0      TGACCGTGCTGGGCGTGTTCGGCGGCACTGCCCTCGGACTGACGCTCAAGAACTCGGCCG 600
consensus_5706#1      TGACCGTGCTGGGCGTGTTCGGCGGCACTGCGCTCGGTCTGACGCTCAAGAACTCGGCCG 475
                      ******************************* ***** **********************

consensus_5706#0      AACCGTGGACGCAGCGTGAGGTGATGTACATCCAGTATCCGGGCGATCTGTTCCTACGGA 660
consensus_5706#1      AACCGTGGACGCAGCGTGAGGTGATGTACATCCAGTATCCGGGCGATCTGTTCCTACGGA 535
                      ************************************************************

consensus_5706#0      TGCTGAAGTGTCTGATCGTGCCGCTGCTCGTCTCGTCGATCACCAGTGCGATCGGTTCGC 720
consensus_5706#1      TGCTGAAGTGTCTGATCGTGCCGCTGCTCGTCTCGTCGATCACCAGTGCGATCGGTTCGC 595
                      ************************************************************

consensus_5706#0      TGGATTTGAGCATGTCGAAGAAGATCGCCTTCCGGGCGATCATCTACTACTTCACCACCA 780
consensus_5706#1      TGGATTTGAGCATGTCGAAGAAGATCGCTTTCCG-------------------------- 629
                      **************************** *****                          

consensus_5706#0      CGGTCTGTGCCGTCATCTTGGGCATCATACTGGTCAGCACGATCCGGCCGGGTGCGGGCC 840
consensus_5706#1      ------------------------------------------------------------
                                                                                  

consensus_5706#0      GCGAGGTGAGCAACCTCGGTGGCAAGGCAACGACGCGGCAGGTCCTGACCGCCGACACGC 900
consensus_5706#1      ------------------------------------------------------------
                                                                                  

consensus_5706#0      TGCTTGATCTCGTCAGAAATCTATTCCCACCGAACATCATCCAGGCTACAATGTTCCAGT 960
consensus_5706#1      ------------------------------------------------------------
                                                                                  

consensus_5706#0      TCCGAACCATTCTTGTCCCTCCAGCCAATGCCACCGGTGTTCCATTGACCCAGTACAAGA 1020
consensus_5706#1      ------------------------------------------------------------
                                                                                  

consensus_5706#0      TCACGTCCGAGTTTACCGAGGGCACGAATGTGCTCGGTCTCGTCATGTTTAGCGTGGTGC 1080
consensus_5706#1      ------------------------------------------------------------
                                                                                  

consensus_5706#0      TCGGCACCTGCATAGGCAAGATGCGCGAGAAGGGCAAGCCGCTGCTCGGGCTCTTTGAAA 1140
consensus_5706#1      ------------------------------------------------------------
                                                                                  

consensus_5706#0      CGCTCAGCGAAGCGATGATGATCATCACCTCGTGGGTGATCTGGATCTCGCCGATCGGTG 1200
consensus_5706#1      ------------------------------------------------------------
                                                                                  

consensus_5706#0      TGCTGTTTCTGGTCGCGGCCAAGCTGCTGGAGATGGCGTCCTTCGTCGAGGTGCTGGGAC 1260
consensus_5706#1      ------------------------------------------------------------
                                                                                  

consensus_5706#0      AGCTGGGCTGGTACTTTATGACTGTGATGCTGGGGCTGATGCTGCACGGTTTCGGTACGA 1320
consensus_5706#1      ------------------------------------------------------------
                                                                                  

consensus_5706#0      TTTCGGTCATCTTC 1334
consensus_5706#1      --------------
                                    




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)