These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5706#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1334 fasta sequence [CCGCCCACGCGTCCGGTTGCATCCGCACCCCGGTGCCGGCTTTGTTTGTTAGACAACATCATACAACCCCGACGAACCTTGGTCTGCTGGGTTTGCGCCCACTTTGCGCCCGCCGTTTTGGGTACCGGATTTGGGTACAACCCCGGTGTAGGCGACCTGTGTGCTTGACCCGTGAAGGGGGCCGTGTGTGTGTGTGTGAGTGTTTTGCACCGGTGGTACAACTGCTGTGTTATCACCGCGTGATACGAGCCAACAGAACGTGCTTTAGGTGTGTAGAAGACCGTGTGCTGCAACCGTCCGCTGTATACTACCGATCGGCTACCGATCGTCTCACCGGCCGAGTTGATCGCGCTTGAGTGTTCGCAGGCAAGAGATTTCCCTCAAACACCGAACTCTTCAGAAGGGGTGCGTTTTAGCCAGAACCCGGAACTCGGATCTTACGCATTGAGCCTAAAAACATGTCGAACTCATACGCGACTGCCGGCGCACGGCCAACGTCACGATGGAAGCAGTTCATAAAGTCGAACCTGCTCACCTTTCTGACCGTGCTGGGCGTGTTCGGCGGCACTGCCCTCGGACTGACGCTCAAGAACTCGGCCGAACCGTGGACGCAGCGTGAGGTGATGTACATCCAGTATCCGGGCGATCTGTTCCTACGGATGCTGAAGTGTCTGATCGTGCCGCTGCTCGTCTCGTCGATCACCAGTGCGATCGGTTCGCTGGATTTGAGCATGTCGAAGAAGATCGCCTTCCGGGCGATCATCTACTACTTCACCACCACGGTCTGTGCCGTCATCTTGGGCATCATACTGGTCAGCACGATCCGGCCGGGTGCGGGCCGCGAGGTGAGCAACCTCGGTGGCAAGGCAACGACGCGGCAGGTCCTGACCGCCGACACGCTGCTTGATCTCGTCAGAAATCTATTCCCACCGAACATCATCCAGGCTACAATGTTCCAGTTCCGAACCATTCTTGTCCCTCCAGCCAATGCCACCGGTGTTCCATTGACCCAGTACAAGATCACGTCCGAGTTTACCGAGGGCACGAATGTGCTCGGTCTCGTCATGTTTAGCGTGGTGCTCGGCACCTGCATAGGCAAGATGCGCGAGAAGGGCAAGCCGCTGCTCGGGCTCTTTGAAACGCTCAGCGAAGCGATGATGATCATCACCTCGTGGGTGATCTGGATCTCGCCGATCGGTGTGCTGTTTCTGGTCGCGGCCAAGCTGCTGGAGATGGCGTCCTTCGTCGAGGTGCTGGGACAGCTGGGCTGGTACTTTATGACTGTGATGCTGGGGCTGATGCTGCACGGTTTCGGTACGATTTCGGTCATCTTC] [+] EMBL BM634199 [CCGCCCACGCGTCCGGTTGCATCCGCACCCCGGTGCCGGCTTTGTTTGTTAGACAACATCATACAACCCCGACGAACCTTGGTCTGCTGGGTTTGCGCCCACTTTGCGCCCGCCGTTTTGGGTACCGGATTTGGGTACAACCCCGGTGTAGGCGACCTGTGTGCTTGACCCGTGAAGGGGGCCGTGTGTGTGTGTGTGAGTGTTTTGCACCGGTGGTACAACTGCTGTGTTATCACCGCGTGATACGAGCCAACAGAACGTGCTTTAGGTGTGTAGAAGACCGTGTGCTGCAACCGTCCGCTGTATACTACCGATCGGCTACCGATCGTCTCACCGGCCGAGTTGATCGCGCTTGAGTGTTCGCAGGCAAGAGATTTCCCTCAAACACCGAACTCTTCAGAAGGGGTGCGTTTTAGCCAGAACCCGGAACTCGGATCTTACGCATTGAGCCTAAAAACATGTCGAACTCATACGCGACTGCCGGCGCACGGCCAACGTCACGATGGAAGCAGTTCATAAAGTCGAACCTGCTCACCTTTCTGACCGTGCTGGGCGTGTTCGGCGGCACTGCCCTCGGACTGACGCTCAAGAACTCGGCCGAACCGTGGACGCAGCGTGAGGTGATGTACATCCAGTATCCGGGCGATCTGTTCCTACGGATGCT ] [+] EMBL BM596620 [ ccgGGCCAACGTCACGATGGAAGCAGTTCATAAAGTCGAACCTGCTCACCTTTCTGACCGTGCTGGGCGTGTTCGGCGGCACTGCCCTCGGACTGACGCTCAAGAACTCGGCCGAACCGTGGACGCAGCGTGAGGTGATGTACATCCAGTATCCGGGCGATCTGTTCCTACGGATGCTGAAGTGTCTGATCGTGCCGCTGCTCGTCTCGTCGATCACCAGTGCGATCGGTTCGCTGGATTTGAGCATGTCGAAGAAGATCGCCTTCCGGGCGATCATCTACTACTTCACCACCACGGTCTGTGCCGTCATCTTGGGCATCATACTGGTCAGCACGATCCGGCCGGGTGCGGGCCGCGAGGTGAGCAACCTCGGTGGCAAGGCAACGACGCGGCAGGTCCTGACCGCCGACACGCTGCTTGATCTCGTCAGAAATCTATTCCCACCGAACATCATCCAGGCTACAATGTTCCAGTTCCGAACCATTCTTGTCCCTCCAGCCAATGCCACCGGTGTTCCATTGACCCAGTACAAGATCACGTCCGAGTTTACCGAGGGCACGAATGTGCTCGGTCTCGTCATGTTTAGCGTGGTGCTCGGCA ] [+] EMBL BM638865 [ ccgGTCATCTTGGGCATCATACTGGTCAGCACGATCCGGCCGGGTGCGGGCCGCGAGGTGAGCAACCTCGGTGGCAAGGCAACGACGCGGCAGGTCCTGACCGCCGACACGCTGCTTGATCTCGTCAGAAATCTATTCCCACCGAACATCATCCAGGCTACAATGTTCCAGTTCCGAACCATTCTTGTCCCTCCAGCCAATGCCACCGGTGTTCCATTGACCCAGTACAAGATCACGTCCGAGTTTACCGAGGGCACGAATGTGCTCGGTCTCGTCATGTTTAGCGTGGTGCTCGGCACCTGCATAGGCAAGATGCGCGAGAAGGGCAAGCCGCTGCTCGGGCTCTTTGAAACGCTCAGCGAAGCGATGATGATCATCACCTCGTGGGTGATCTGGATCTCGCCGATCGGTGTGCTGTTTCTGGTCGCGGCCAAGCTGCTGGAGATGGCGTCCTTCGTCGAGGTGCTGGGACAGCTGGGCTGGTACTTTATGACTGTGATGCTGGGGCTGATGCTGCACGGTTTCGGTACGATTTCGGTCATCTTC] consensusID : consensus_5706#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 629 fasta sequence [CCGCGCACCCCGGTGCCGGCTTTGTTTGTTAGACAACATCATACAACCCCGACGAACCTTGGTCTGCTGGGTTTGCGCCCACTTTGCGCCCGCCGTTTTGGGTACCGGATTTGGGTACAACCCCGGTGTAGGCGACCTGTGTGCTTGACCCGTGAAGGGGGCCGTGTGTGTGTGTGTGAGTGTTTTGCACCGGTGGTACAACTGCTGTGTTATCACCGCGTGATACGAGCCAACAGAACGTGCTTTAGATTTCCCTCAAACACCGAACTCTCCAGAAGGGGTGCGTTTTAGCCAGAACCCGGAACTCGGATCTTACGCATTGAGCCTAAAAACATGTCGAACTCATACGCGACTGCCGGCGCACGGCCAACGTCACGATGGAAGCAGTTCATAAAGTCGAACCTGCTCACCTTTCTGACCGTGCTGGGCGTGTTCGGCGGCACTGCGCTCGGTCTGACGCTCAAGAACTCGGCCGAACCGTGGACGCAGCGTGAGGTGATGTACATCCAGTATCCGGGCGATCTGTTCCTACGGATGCTGAAGTGTCTGATCGTGCCGCTGCTCGTCTCGTCGATCACCAGTGCGATCGGTTCGCTGGATTTGAGCATGTCGAAGAAGATCGCTTTCCG] [+] EMBL BM655420 [CCGCGCACCCCGGTGCCGGCTTTGTTTGTTAGACAACATCATACAACCCCGACGAACCTTGGTCTGCTGGGTTTGCGCCCACTTTGCGCCCGCCGTTTTGGGTACCGGATTTGGGTACAACCCCGGTGTAGGCGACCTGTGTGCTTGACCCGTGAAGGGGGCCGTGTGTGTGTGTGTGAGTGTTTTGCACCGGTGGTACAACTGCTGTGTTATCACCGCGTGATACGAGCCAACAGAACGTGCTTTAGATTTCCCTCAAACACCGAACTCTCCAGAAGGGGTGCGTTTTAGCCAGAACCCGGAACTCGGATCTTACGCATTGAGCCTAAAAACATGTCGAACTCATACGCGACTGCCGGCGCACGGCCAACGTCACGATGGAAGCAGTTCATAAAGTCGAACCTGCTCACCTTTCTGACCGTGCTGGGCGTGTTCGGCGGCACTGCGCTCGGTCTGACGCTCAAGAACTCGGCCGAACCGTGGACGCAGCGTGAGGTGATGTACATCCAGTATCCGGGCGATCTGTTCCTACGGATGCTGAAGTGTCTGATCGTGCCGCTGCTCGTCTCGTCGATCACCAGTGCGATCGGTTCGCTGGATTTGAGCATGTCGAAGAAGATCGCTTTCCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5706#0 CCGCCCACGCGTCCGGTTGCATCCGCACCCCGGTGCCGGCTTTGTTTGTTAGACAACATC 60 consensus_5706#1 --------------------CCGCGCACCCCGGTGCCGGCTTTGTTTGTTAGACAACATC 40 ************************************* consensus_5706#0 ATACAACCCCGACGAACCTTGGTCTGCTGGGTTTGCGCCCACTTTGCGCCCGCCGTTTTG 120 consensus_5706#1 ATACAACCCCGACGAACCTTGGTCTGCTGGGTTTGCGCCCACTTTGCGCCCGCCGTTTTG 100 ************************************************************ consensus_5706#0 GGTACCGGATTTGGGTACAACCCCGGTGTAGGCGACCTGTGTGCTTGACCCGTGAAGGGG 180 consensus_5706#1 GGTACCGGATTTGGGTACAACCCCGGTGTAGGCGACCTGTGTGCTTGACCCGTGAAGGGG 160 ************************************************************ consensus_5706#0 GCCGTGTGTGTGTGTGTGAGTGTTTTGCACCGGTGGTACAACTGCTGTGTTATCACCGCG 240 consensus_5706#1 GCCGTGTGTGTGTGTGTGAGTGTTTTGCACCGGTGGTACAACTGCTGTGTTATCACCGCG 220 ************************************************************ consensus_5706#0 TGATACGAGCCAACAGAACGTGCTTTAGGTGTGTAGAAGACCGTGTGCTGCAACCGTCCG 300 consensus_5706#1 TGATACGAGCCAACAGAACGTGCTTTAG-------------------------------- 248 **************************** consensus_5706#0 CTGTATACTACCGATCGGCTACCGATCGTCTCACCGGCCGAGTTGATCGCGCTTGAGTGT 360 consensus_5706#1 ------------------------------------------------------------ consensus_5706#0 TCGCAGGCAAGAGATTTCCCTCAAACACCGAACTCTTCAGAAGGGGTGCGTTTTAGCCAG 420 consensus_5706#1 -------------ATTTCCCTCAAACACCGAACTCTCCAGAAGGGGTGCGTTTTAGCCAG 295 *********************** *********************** consensus_5706#0 AACCCGGAACTCGGATCTTACGCATTGAGCCTAAAAACATGTCGAACTCATACGCGACTG 480 consensus_5706#1 AACCCGGAACTCGGATCTTACGCATTGAGCCTAAAAACATGTCGAACTCATACGCGACTG 355 ************************************************************ consensus_5706#0 CCGGCGCACGGCCAACGTCACGATGGAAGCAGTTCATAAAGTCGAACCTGCTCACCTTTC 540 consensus_5706#1 CCGGCGCACGGCCAACGTCACGATGGAAGCAGTTCATAAAGTCGAACCTGCTCACCTTTC 415 ************************************************************ consensus_5706#0 TGACCGTGCTGGGCGTGTTCGGCGGCACTGCCCTCGGACTGACGCTCAAGAACTCGGCCG 600 consensus_5706#1 TGACCGTGCTGGGCGTGTTCGGCGGCACTGCGCTCGGTCTGACGCTCAAGAACTCGGCCG 475 ******************************* ***** ********************** consensus_5706#0 AACCGTGGACGCAGCGTGAGGTGATGTACATCCAGTATCCGGGCGATCTGTTCCTACGGA 660 consensus_5706#1 AACCGTGGACGCAGCGTGAGGTGATGTACATCCAGTATCCGGGCGATCTGTTCCTACGGA 535 ************************************************************ consensus_5706#0 TGCTGAAGTGTCTGATCGTGCCGCTGCTCGTCTCGTCGATCACCAGTGCGATCGGTTCGC 720 consensus_5706#1 TGCTGAAGTGTCTGATCGTGCCGCTGCTCGTCTCGTCGATCACCAGTGCGATCGGTTCGC 595 ************************************************************ consensus_5706#0 TGGATTTGAGCATGTCGAAGAAGATCGCCTTCCGGGCGATCATCTACTACTTCACCACCA 780 consensus_5706#1 TGGATTTGAGCATGTCGAAGAAGATCGCTTTCCG-------------------------- 629 **************************** ***** consensus_5706#0 CGGTCTGTGCCGTCATCTTGGGCATCATACTGGTCAGCACGATCCGGCCGGGTGCGGGCC 840 consensus_5706#1 ------------------------------------------------------------ consensus_5706#0 GCGAGGTGAGCAACCTCGGTGGCAAGGCAACGACGCGGCAGGTCCTGACCGCCGACACGC 900 consensus_5706#1 ------------------------------------------------------------ consensus_5706#0 TGCTTGATCTCGTCAGAAATCTATTCCCACCGAACATCATCCAGGCTACAATGTTCCAGT 960 consensus_5706#1 ------------------------------------------------------------ consensus_5706#0 TCCGAACCATTCTTGTCCCTCCAGCCAATGCCACCGGTGTTCCATTGACCCAGTACAAGA 1020 consensus_5706#1 ------------------------------------------------------------ consensus_5706#0 TCACGTCCGAGTTTACCGAGGGCACGAATGTGCTCGGTCTCGTCATGTTTAGCGTGGTGC 1080 consensus_5706#1 ------------------------------------------------------------ consensus_5706#0 TCGGCACCTGCATAGGCAAGATGCGCGAGAAGGGCAAGCCGCTGCTCGGGCTCTTTGAAA 1140 consensus_5706#1 ------------------------------------------------------------ consensus_5706#0 CGCTCAGCGAAGCGATGATGATCATCACCTCGTGGGTGATCTGGATCTCGCCGATCGGTG 1200 consensus_5706#1 ------------------------------------------------------------ consensus_5706#0 TGCTGTTTCTGGTCGCGGCCAAGCTGCTGGAGATGGCGTCCTTCGTCGAGGTGCTGGGAC 1260 consensus_5706#1 ------------------------------------------------------------ consensus_5706#0 AGCTGGGCTGGTACTTTATGACTGTGATGCTGGGGCTGATGCTGCACGGTTTCGGTACGA 1320 consensus_5706#1 ------------------------------------------------------------ consensus_5706#0 TTTCGGTCATCTTC 1334 consensus_5706#1 -------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||