These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5757#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 970 fasta sequence [CCGGGTGGCCCTCGGTAGGGCAACAACGGAAGAAGTCGAGAAAAAATCGACTGCTGCGCGTCGCGAATAGTGCGTGTGGCTCAGTAAAATGTTTTCTCTCAATTGCAGCACAAGTCGGCGAAATAATGACGGACTCGTTTCCGCTGCATGAGTGCGTCTTTAACGGTGATACCCGTAAGCTATCGCTGCTGCTCCGGACTCACGAAATAGCTGAAAAGGACAAACATGGAAACACTCCACTCCATTTGGCTGTTATGCTGGGAAAGAAAGAATGTATCTTCTTATTGCTTGCACATGGCGCACCGGTTAAAGTGAAAAATTCTCAAGGATGGTCACCCCTAGCGGAAGCGATCTCATACGGAGATCGTCAAATAATAAGTTCACTGTTGCGCAAATTGAAGCAACAGGCACGCGAACAAATGGAACAACGTCGCCCGAACTTGGTGAAAGCCCTAAAGCAGATGGGTGACTTCTACATGGAGCTCAAGTGGGACTTTCATTCCTGGGTGCCACTTATCTCCCGTATCCTTCCCTCTGACGTGTGCAAAATTCACAAATCCGGCTGTTCGATCCGGCTGGATACGACGCTGGTTGACTTTTCCGATATGCGCTGGGAGCGTGGCGACATCTCGTTCATTTTCAAAGGCGATAACCCTCCAAAGGACTCGTTGACGGCGCTCGACAACGAGTGTCGTTGTTACCAACACGTGCGACACGAAGAGACCGAGATGGAGATTGAGGATGAGGTCGATATCTTGATGTCGAGCGACATCCTTGCGGCGCAGATGTCAACGAAGGGTATCAGTTTCACGAAAGCACAATCCGGCTGGATCTTTCGCGAGGATCGGCGGGAAACAGTGGCCGGACAGTACGACAGTGATCTCTACACAATAAACGGGCTGACGCTGGAGCAGCGCAAGCGCCGCGAACACTTATCTCGAGACGATCTGCAGAAAAACAAAGCGCTGAT] [+] EMBL BM644666 [CCGGGTGGCCCTCGGTAGGGCAACAACGGAAGAAGTCGAGAAAAAATCGACTGCTGCGCGTCGCGAATAGTGCGTGTGGCTCAGTAAAATGTTTTCTCTCAATTGCAGCACAAGTCGGCGAAATAATGACGGACTCGTTTCCGCTGCATGAGTGCGTCTTTAACGGTGATACCCGTAAGCTATCGCTGCTGCTCCGGACTCACGAAATAGCTGAAAAGGACAAACATGGAAACACTCCACTCCATTTGGCTGTTATGCTGGGAAAGAAAGAATGTATCTTCTTATTGCTTGCACATGGCGCACCGGTTAAAGTGAAAAATTCTCAAGGATGGTCACCCCTAGCGGAAGCGATCTCATACGGAGATCGTCAAATAATAAGTTCACTGTTGCGCAAATTGAAGCAACAGGCACGCGAACAAATGGAACAACGTCGCCCGAACTTGGTGAAAGCCCTAAAGCAGATGGGTGACTTCTACATGGAGCTCAAGTGGGACTTTCATTCCTGGGTGCCACTTATCTCCCGTATCCTTCCCTCTGACGTGTGCAAAATTCACAAATCCGGCTGTTCGATCCGGCTGGATACGACGCTGGTTGACTTTTCCGATATGCGCTGGGAGCGTGGCGACATCTCGTTCATTTTC ] [+] EMBL BM605994 [ ccgGGGAAAGAAAGAATGTATCTTCTTATTGCTTGCACATGGCGCACCGGTTAAAGTGAAAAATTCTCAAGGATGGTCACCCCTAGCGGAAGCGATCTCATACGGAGATCGTCAAATAATAAGTTCACTGTTGCGCAAATTGAAGCAACAGGCACGCGAACAAATGGAACAACGTCGCCCGAACTTGGTGAAAGCCCTAAAGCAGATGGGTGACTTCTACATGGAGCTCAAGTGGGACTTTCATTCCTGGGTGCCACTTATCTCCCGTATCCTTCCCTCTGACGTGTGCAAAATTCACAAATCCGGCTGTTCGATCCGGCTGGATACGACGCTGGTTGACTTTTCCGATATGCGCTGGGAGCGTGGCGACATCTCGTTCATTTTCAAAGGCGATAACCCTCCAAAGGACTCGTTGACGGCGCTCGACAACGAGTGTCGTTGTTACCAACACGTGCGACACGAAGAGACCGAGATGGAGATTGAGGATGAGGTCGATATCTTGATGTCGAGCGACATCCTTGCGGCGCAGATGTCAACGAAGGGTATCAGTTTCACGAAAGCACAATCCGGCTGGATCTTTCGCGAGGATCGGCGGGAAACAGTGGCCGGACAGTACGACAGTGATCTCTACACAATAAACGGGCTGACGCTGGAGCAGCGCAAGCGCCGCGAACACTTATCTCGAGACGATCTGCAGAAAAACAAAGCGCTGAT] consensusID : consensus_5757#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 668 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGTGTTCGTGGAGCACAAGTCGGCGAAATAATGACGGACTCGTTTCCGCTGCATGAGTGCGTCTTTAACGGTGATACCCGTAAGCTATCGCTGCTGCTCCGGACTCACGAAATAGCTGAAAAGGACAAACATGGAAACACTCCACTCCATTTGGCTGTTATGCTGGGAAAGAAAGAATGTATCTTCTTATTGCTTGCACATGGCGCACCGGTTAAAGTGAAAAATTCTCAAGGATGGTCACCCCTAGCGGAAGCGATCTCATACGGAGATCGTCAAATAATAAGTTCACTGTTGCGCAAATTGAAGCAACAGGCACGCGAACAAATGGAACAACGTCGCCCGAACTTGGTGAAAGCCCTAAAGCAGATGGGTGACTTCTACATGGAGCTCAAGTGGGACTTTCATTCCTGGGTGCCACTTATCTCCCGTATCCTTCCCTCTGACGTGTGCAAAATTCACAAATCCGGCTGTTCGATCCGGCTGGATACGACGCTGGTTGACTTTTCCGATATGCGCTGGGAGCGTGGCGACATCTCGTTCATTTTCAAAGGCGATAACCCTCCAAAGGACTCGTTGACGGCGCTCGACAACGAAGTGTCGTTGTTACCAACACGTGCGACACGAAGAGACCGAGATGGAGATT] [+] EMBL BM641644 [CCGCCCACGCGTCCGCCCACGCGTCCGTGTTCGTGGAGCACAAGTCGGCGAAATAATGACGGACTCGTTTCCGCTGCATGAGTGCGTCTTTAACGGTGATACCCGTAAGCTATCGCTGCTGCTCCGGACTCACGAAATAGCTGAAAAGGACAAACATGGAAACACTCCACTCCATTTGGCTGTTATGCTGGGAAAGAAAGAATGTATCTTCTTATTGCTTGCACATGGCGCACCGGTTAAAGTGAAAAATTCTCAAGGATGGTCACCCCTAGCGGAAGCGATCTCATACGGAGATCGTCAAATAATAAGTTCACTGTTGCGCAAATTGAAGCAACAGGCACGCGAACAAATGGAACAACGTCGCCCGAACTTGGTGAAAGCCCTAAAGCAGATGGGTGACTTCTACATGGAGCTCAAGTGGGACTTTCATTCCTGGGTGCCACTTATCTCCCGTATCCTTCCCTCTGACGTGTGCAAAATTCACAAATCCGGCTGTTCGATCCGGCTGGATACGACGCTGGTTGACTTTTCCGATATGCGCTGGGAGCGTGGCGACATCTCGTTCATTTTCAAAGGCGATAACCCTCCAAAGGACTCGTTGACGGCGCTCGACAACGAAGTGTCGTTGTTACCAACACGTGCGACACGAAGAGACCGAGATGGAGATT] [+] EMBL BM603451 [ ccgatgcTGTTCGTGGAGCACAAGTCGGCGAAATAATGACGGACTCGTTTCCGCTGCATGAGTGCGTCTTTAACGGTGATACCCGTAAGCTATCGCTGCTGCTCCGGACTCACGAAATAGCCGAAAAGGACAAACATGGAAACACTCCACTCCATTTGGCTGTTATGCTGGGAAAGAAAGAATGTATCTTCTTATTGCTTGCACATGGCGCACCGGTTAAAGTGAAAAATTCTCAAGGATGGTCACCCCTAGCAGAAGCGATCTCATACGGAGATCGTCAAATAATAAGTTCACTGTTGCGCAAATTGAAGCAACAGGCACGCGAACAAATGGAACAACGTCGCCCGAACCTGGTGAAAGCCCTAAAGCAGATGGGTGACTTCTACATGGAGCTCAAGTGGGACTTTCATTCCTGGGTGCCACTTATCTCCCGTATCCTTCCCTCTGACGTGTGCAAAATTCACAAATCCGGCTGTTCGATCCGGCTGGATACGACGCTGGTTGATTTTTCCGATATGCGCTGGGAGCGTGGCGACATCTCGTTCATTTTCAAAGGCGATAACCCTCCAAAGGACTCGTTGACGGC ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5757#0 CCGGGTGGCCCTCGGTAGGGCAACAACGGAAGAAGTCGAGAAAAAATCGACTGCTGCGCG 60 consensus_5757#1 ------------------------------------------------------------ consensus_5757#0 TCGCGAATAGTGCGTGTGGCTCAGTAAAATGTTTTCTCTCAATTGCAGCACAAGTCGGCG 120 consensus_5757#1 -------CCGCCCACGCGTC-CGCCCACGCGTCCGTGTTCG--TGGAGCACAAGTCGGCG 50 * * * * * * * ** ** ** ************** consensus_5757#0 AAATAATGACGGACTCGTTTCCGCTGCATGAGTGCGTCTTTAACGGTGATACCCGTAAGC 180 consensus_5757#1 AAATAATGACGGACTCGTTTCCGCTGCATGAGTGCGTCTTTAACGGTGATACCCGTAAGC 110 ************************************************************ consensus_5757#0 TATCGCTGCTGCTCCGGACTCACGAAATAGCTGAAAAGGACAAACATGGAAACACTCCAC 240 consensus_5757#1 TATCGCTGCTGCTCCGGACTCACGAAATAGCTGAAAAGGACAAACATGGAAACACTCCAC 170 ************************************************************ consensus_5757#0 TCCATTTGGCTGTTATGCTGGGAAAGAAAGAATGTATCTTCTTATTGCTTGCACATGGCG 300 consensus_5757#1 TCCATTTGGCTGTTATGCTGGGAAAGAAAGAATGTATCTTCTTATTGCTTGCACATGGCG 230 ************************************************************ consensus_5757#0 CACCGGTTAAAGTGAAAAATTCTCAAGGATGGTCACCCCTAGCGGAAGCGATCTCATACG 360 consensus_5757#1 CACCGGTTAAAGTGAAAAATTCTCAAGGATGGTCACCCCTAGCGGAAGCGATCTCATACG 290 ************************************************************ consensus_5757#0 GAGATCGTCAAATAATAAGTTCACTGTTGCGCAAATTGAAGCAACAGGCACGCGAACAAA 420 consensus_5757#1 GAGATCGTCAAATAATAAGTTCACTGTTGCGCAAATTGAAGCAACAGGCACGCGAACAAA 350 ************************************************************ consensus_5757#0 TGGAACAACGTCGCCCGAACTTGGTGAAAGCCCTAAAGCAGATGGGTGACTTCTACATGG 480 consensus_5757#1 TGGAACAACGTCGCCCGAACTTGGTGAAAGCCCTAAAGCAGATGGGTGACTTCTACATGG 410 ************************************************************ consensus_5757#0 AGCTCAAGTGGGACTTTCATTCCTGGGTGCCACTTATCTCCCGTATCCTTCCCTCTGACG 540 consensus_5757#1 AGCTCAAGTGGGACTTTCATTCCTGGGTGCCACTTATCTCCCGTATCCTTCCCTCTGACG 470 ************************************************************ consensus_5757#0 TGTGCAAAATTCACAAATCCGGCTGTTCGATCCGGCTGGATACGACGCTGGTTGACTTTT 600 consensus_5757#1 TGTGCAAAATTCACAAATCCGGCTGTTCGATCCGGCTGGATACGACGCTGGTTGACTTTT 530 ************************************************************ consensus_5757#0 CCGATATGCGCTGGGAGCGTGGCGACATCTCGTTCATTTTCAAAGGCGATAACCCTCCAA 660 consensus_5757#1 CCGATATGCGCTGGGAGCGTGGCGACATCTCGTTCATTTTCAAAGGCGATAACCCTCCAA 590 ************************************************************ consensus_5757#0 AGGACTCGTTGACGGCGCTCGACAACGA-GTGTCGTTGTTACCAACACGTGCGACACGAA 719 consensus_5757#1 AGGACTCGTTGACGGCGCTCGACAACGAAGTGTCGTTGTTACCAACACGTGCGACACGAA 650 **************************** ******************************* consensus_5757#0 GAGACCGAGATGGAGATTGAGGATGAGGTCGATATCTTGATGTCGAGCGACATCCTTGCG 779 consensus_5757#1 GAGACCGAGATGGAGATT------------------------------------------ 668 ****************** consensus_5757#0 GCGCAGATGTCAACGAAGGGTATCAGTTTCACGAAAGCACAATCCGGCTGGATCTTTCGC 839 consensus_5757#1 ------------------------------------------------------------ consensus_5757#0 GAGGATCGGCGGGAAACAGTGGCCGGACAGTACGACAGTGATCTCTACACAATAAACGGG 899 consensus_5757#1 ------------------------------------------------------------ consensus_5757#0 CTGACGCTGGAGCAGCGCAAGCGCCGCGAACACTTATCTCGAGACGATCTGCAGAAAAAC 959 consensus_5757#1 ------------------------------------------------------------ consensus_5757#0 AAAGCGCTGAT 970 consensus_5757#1 ----------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||