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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5768#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 832 fasta sequence
[CCGCCCACGCGTCCGCCCACGCGTCCGCTTCGTTGTGTTCGGTATGTAGCTGTATTTCGGTGCTGGAAAATCACCAAAAAACGTAGAAAAATGGTTTCAATTGAATCGATTCGTGAACAGTTTGACGAGCTGGGCATAGAACCATCTGATGAAGTTGTAAATAAGTGTATTGAAATTTGTATCAACAACGATATCACCGATCCAGTAGAGTTCGTGGAACAATGGATGGCTTACAGTGTGTCGAAATTGAGTGGTGCCGAACCAACGGTAGCCTATCTAAACGAGATGGAAGCCCACGAATACACGAGCAAAGCACGGAAGCTAACGAAAGTATCGAGCATTGCTGCCACCAGCGGGAGCATCGGTACGTCTCCACGAATGGATTCCAAAGTGTCCAAAATAACAACCTATCGCAATGTGGATTCAGTCGAGCAAGATGTGTTGGAAATGTACGGGTGTATTACTCCCAAGGCTAAAAAGACGGTCTCTCGCTTGCAACACAATGTGAACACTCCGAACGGCGTTCGAGGAGGAGGTAATGGTGGAAGTCCATTCACAACCGTTACCTACTCTCCATTGTCCGCGTCGTCTAAGAAGAATGATCCAGATGCACCGAGTAAAGCTGGACAGATCGTGTACACGTATGGCAGTGCTAAGTTGCTGAAGCAATTTAACTGGCTACCTACCACTACCGATGGAGGAAAGGAACCTATCCCGATAGATGACGATGTATCGCTGGGCGATAGAAATAGGCGAACGGGCGCTGGCCGCGGCAAGGGAATCGGCTTCACAATAAAGTCGGCACAGTTTGCTAACGATGGCTGCAAATACA]
[+] EMBL BM604019 [CCGCCCACGCGTCCGCCCACGCGTCCGCTTCGTTGTGTTCGGTATGTAGCTGTATTTCGGTGCTGGAAAATCACCAAAAAACGTAGAAAAATGGTTTCAATTGAATCGATTCGTGAACAGTTTGACGAGCTGGGCATAGAACCATCTGATGAAGTTGTAAATAAGTGTATTGAAATTTGTATCAACAACGATATCACCGATCCAGTAGAGTTCGTGGAACAATGGATGGCTTACAGTGTGTCGAAATTGAGTGGTGCCGAACCAACGGTAGCCTATCTAAACGAGATGGAAGCCCACGAATACACGAGCAAAGCACGGAAGCTAACGAAAGTATCGAGCATTGCTGCCACCAGCGGGAGCATCGGTACGTCTCCACGAATGGATTCCAAAGTGTCCAAAATAACAACCTATCGCAATGTGGATTCAGTCGAGCAAGATGTGTTGGAAATGTACGGGTGTATTACTCCCAAGGCTAAAAAGACGGTCTCTCGCTTGCAACACAATGTGAACACTCCGAACGGCGTTCGAGGAGGAGGTAA ]
[+] EMBL BM612888 [ ccgTGGATGGCTTACAGTGTGTCGAAATTGAGTGGTGCCGAACCAACGGTAGCCTATCTAAACGAGATGGAAGCCCACGAATACACGAGCAAAGCACGGAAGCTAACGAAAGTATCGAGCATTGCTGCCACCAGCGGGAGCATCGGTACGTCTCCACGAATGGATTCCAAAGTGTCCAAAATAACAACCTATCGCAATGTGGATTCAGTCGAGCAAGATGTGTTGGAAATGTACGGTTGTATTACTCCCAAGGCTAAAAAGACGGTCTCTCGCTTGCAACATAATGTGAACACTCCGAACGGCGTTCGAGGAGGAGGTAGTGGTGGAAGTCCATTCACAACCGTTACCTACTCTCCATTGTCCGCGTCGTCTAAGAAGAATGATCCAGATGCACCGAGTAAAGCTGGACAGATCGTGTACACGTATGGCAGTGCTAAGTTGCTGAAGCAATTTAACTGGCTACCTACCACTACCGATGGAGGAAAGGAACCTATCCCGATAGATGACGATGTATCGCTGGGCGATAGAAATAGGCGAACGGGCGCTGGCCGCGGCAAGGGAATCGGCTTCACAATAAAGTCGGCACAGTTTGCTAACGATGGCTGCAAATACA]
consensusID : consensus_5768#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 683 fasta sequence
[CCGGGCAAGTTAGCTTGTTGGTTGTGCCGCAGCGTCGCTCGTGAAAGTGTAGTTCCGTAGCGGAATGGGCCCGCTTTTGTTCGAAGTCGCTAACATGCCGGTGGATCAGTTTTGGCGGTCTGGCAGTGATGGTCTAGTGACATTTGTTTTTCCAAATCGGTAATTGATGGCGAAGACCTTCTTAGCGGAAAATGGCAAAAGTGATCGTGCAGTGAAAACAACAGATAGTGCATGATGGAGAAGAAGACGAATGAAGAAGCAAAGCGGCGGCGGTGGCGAGGCTGTTGAAACGGCTAAAAAGACGGTCTCTCGCTTGCAACATAATGTGAACACTCCGAACGGCGTTCGAGGAGGAGGTAGTGGTGGAAGTCCATTCACAACCGTTACCTACTCTCCATTGTCCGCGTCGTCTAAGAAGAATGATCCAGATGCACCGAGTAAAGCTGGACAGATCGTGTACACGTATGGCAGTGCTAAGTTGCTGAAGCAATTTAACTGGCTACCTACCACTACCGATGGAGGAAAGGAACCTATCCCGATAGATGACGATGTATCGCTGGGCGATAGAAATAGGCGAACGGGCGCTGGCCGCGGCAAGGGAATCGGCTTCACAATAAAGTCGGCACAGTTTGCTAACGATGGCTGCAAATACATGTATGATTCTAGCTACGATCGAGTGATGA]
[+] EMBL BM648645 [CCGGGCAAGTTAGCTTGTTGGTTGTGCCGCAGCGTCGCTCGTGAAAGTGTAGTTCCGTAGCGGAATGGGCCCGCTTTTGTTCGAAGTCGCTAACATGCCGGTGGATCAGTTTTGGCGGTCTGGCAGTGATGGTCTAGTGACATTTGTTTTTCCAAATCGGTAATTGATGGCGAAGACCTTCTTAGCGGAAAATGGCAAAAGTGATCGTGCAGTGAAAACAACAGATAGTGCATGATGGAGAAGAAGACGAATGAAGAAGCAAAGCGGCGGCGGTGGCGAGGCTGTTGAAACGGCTAAAAAGACGGTCTCTCGCTTGCAACATAATGTGAACACTCCGAACGGCGTTCGAGGAGGAGGTAGTGGTGGAAGTCCATTCACAACCGTTACCTACTCTCCATTGTCCGCGTCGTCTAAGAAGAATGATCCAGATGCACCGAGTAAAGCTGGACAGATCGTGTACACGTATGGCAGTGCTAAGTTGCTGAAGCAATTTAACTGGCTACCTACCACTACCGATGGAGGAAAGGAACCTATCCCGATAGATGACGATGTATCGCTGGGCGATAGAAATAGGCGAACGGGCGCTGGCCGCGGCAAGGGAATCGGCTTCACAATAAAGTCGGCACAGTTTGCTAACGATGGCTGCAAATACATGTATGATTCTAGCTACGATCGAGTGATGA]
consensusID : consensus_5768#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 670 fasta sequence
[CCGCCCACGCGTCCGCCCACGCGTCCGTTCGGTATGTAGCTGTATTTCGGTGCTGGAAAATCACCAAAAAACGTAGAAAAATGGTTTCAATTGAATCGATTCGTGAACAGTTTGACGAGCTGGGCATAGAACCATCTGATGAAGTTGTAAATAAGTGTATTGAAATTTGTATCAACAACGATATCACCGATCCAGTAGAGTTCGTGGAACAATGGATGGCTTACAGTGTGTCGAAATTGAGTGGTGCCGAACCAACGGTAGCCTATCTAAACGAGATGGAAGCCCACGAATACACGAGCAAAGCACGGAAGCTAACGAAAGTATCGAGCATTGCTGCCACCAGCGGGAGCATCGGTACGTCTCCACGAATGGATTCCAAAGTGTCCAAAATAACAACCTATCGCAATGTGGATTCAGTCGAGCAAGATGTGTTGGAAATGTACGGTTGTATTACTCCCAAGGCTAAAAAGACGGTCTCTCGCTTGCAACATAATGTGAACACTCCGAACGGCGTTCGAGGAGGAGGTAGTGGTGGAAGTCCATTCACAACCGTTACCTACTCTCCATTGTCCGCGTCGTCTAAGAAGAATGATCCAGATGCACCGAGTAAAGCTGGACAGATCGTGTACACGTATGGCAGTGCTAAGTTGCTGAAGCAATTTAACTGGCT]
[+] EMBL BM615533 [CCGCCCACGCGTCCGCCCACGCGTCCGTTCGGTATGTAGCTGTATTTCGGTGCTGGAAAATCACCAAAAAACGTAGAAAAATGGTTTCAATTGAATCGATTCGTGAACAGTTTGACGAGCTGGGCATAGAACCATCTGATGAAGTTGTAAATAAGTGTATTGAAATTTGTATCAACAACGATATCACCGATCCAGTAGAGTTCGTGGAACAATGGATGGCTTACAGTGTGTCGAAATTGAGTGGTGCCGAACCAACGGTAGCCTATCTAAACGAGATGGAAGCCCACGAATACACGAGCAAAGCACGGAAGCTAACGAAAGTATCGAGCATTGCTGCCACCAGCGGGAGCATCGGTACGTCTCCACGAATGGATTCCAAAGTGTCCAAAATAACAACCTATCGCAATGTGGATTCAGTCGAGCAAGATGTGTTGGAAATGTACGGTTGTATTACTCCCAAGGCTAAAAAGACGGTCTCTCGCTTGCAACATAATGTGAACACTCCGAACGGCGTTCGAGGAGGAGGTAGTGGTGGAAGTCCATTCACAACCGTTACCTACTCTCCATTGTCCGCGTCGTCTAAGAAGAATGATCCAGATGCACCGAGTAAAGCTGGACAGATCGTGTACACGTATGGCAGTGCTAAGTTGCTGAAGCAATTTAACTGGCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5768#0 CCGCCCACGCGTCCGCCCACGCGTCCGCTTCGTTGTGTTCGGTATGTAGCTGTATTTCGG 60
consensus_5768#2 CCGCCCACGCGTCCGCCCACGCGTCCG----------TTCGGTATGTAGCTGTATTTCGG 50
consensus_5768#1 ------------------------------------------------------------
consensus_5768#0 TGCTGGAAAATCACCAAAAAACGTAGAAAAATGGTTTCAATTGAATCGATTCGTGAACAG 120
consensus_5768#2 TGCTGGAAAATCACCAAAAAACGTAGAAAAATGGTTTCAATTGAATCGATTCGTGAACAG 110
consensus_5768#1 ------------------------------------------------------------
consensus_5768#0 TTTGACGAGCTGGGCATAGAACCATCTGATGAAGTTGTAAATAAGTGTATTGAAATTTGT 180
consensus_5768#2 TTTGACGAGCTGGGCATAGAACCATCTGATGAAGTTGTAAATAAGTGTATTGAAATTTGT 170
consensus_5768#1 --------------------------------CCGGGCAAGTTAGCTTGTTGG---TTGT 25
* ** * ** * *** ****
consensus_5768#0 ATCAACAACGATATCACCGATCCAGTAGAGTTCGTGGAACAATGGATGGCTTACAGTGTG 240
consensus_5768#2 ATCAACAACGATATCACCGATCCAGTAGAGTTCGTGGAACAATGGATGGCTTACAGTGTG 230
consensus_5768#1 GCCG-CAGCGTCGCTCGTGAAAGTGTAGT-TCCGTAGCGGAATG---GGCCCGCTTTTGT 80
* ** ** ** **** * *** * **** *** * *
consensus_5768#0 TCGAAATTGAGTGGTGCCGAACCAACGGTAGCCTATCTAAACGAGATGGAAGCCCACGAA 300
consensus_5768#2 TCGAAATTGAGTGGTGCCGAACCAACGGTAGCCTATCTAAACGAGATGGAAGCCCACGAA 290
consensus_5768#1 TCGAAGTCG----CTAACATGCCGGTGG--ATCAGTTTTGGCGGTCTGGCAGT-----GA 129
***** * * * * ** ** * * * ** *** ** *
consensus_5768#0 TACACGAGCAAAGCACGGAAGCTAACGAAAGTATCGAGCATTGCTGCCACCAGCGGGAGC 360
consensus_5768#2 TACACGAGCAAAGCACGGAAGCTAACGAAAGTATCGAGCATTGCTGCCACCAGCGGGAGC 350
consensus_5768#1 TGGTCTAGTGACATTTGT---TTTTCCAAA---TCGGTAATTGATGGCGAAGACCTTCTT 183
* * ** * * * * *** *** **** ** * *
consensus_5768#0 ATCGGTACGTCTCCACGAATGGATTCCAAAGTGTCCAAAATAACAACCTAT-CGCAATGT 419
consensus_5768#2 ATCGGTACGTCTCCACGAATGGATTCCAAAGTGTCCAAAATAACAACCTAT-CGCAATGT 409
consensus_5768#1 AGCGGAAAATGGCAA--AAGTGATCGTGCAGTG---AAAACAACAGATAGTGCATGATGG 238
* *** * * * * ** *** **** **** **** * * ***
consensus_5768#0 GGATTCAGTCGAGC-AAGATGTGTTGGAAATGTA-CGGGTGTATTACTCCCAAGGCTAAA 477
consensus_5768#2 GGATTCAGTCGAGC-AAGATGTGTTGGAAATGTA-CGGTTGTATTACTCCCAAGGCTAAA 467
consensus_5768#1 AGAAGAAGACGAATGAAGAAGCAAAGCGGCGGCGGTGGCGAGGCTGTTGAAACGGCTAAA 298
** ** *** **** * * * ** * * * *******
consensus_5768#0 AAGACGGTCTCTCGCTTGCAACACAATGTGAACACTCCGAACGGCGTTCGAGGAGGAGGT 537
consensus_5768#2 AAGACGGTCTCTCGCTTGCAACATAATGTGAACACTCCGAACGGCGTTCGAGGAGGAGGT 527
consensus_5768#1 AAGACGGTCTCTCGCTTGCAACATAATGTGAACACTCCGAACGGCGTTCGAGGAGGAGGT 358
*********************** ************************************
consensus_5768#0 AATGGTGGAAGTCCATTCACAACCGTTACCTACTCTCCATTGTCCGCGTCGTCTAAGAAG 597
consensus_5768#2 AGTGGTGGAAGTCCATTCACAACCGTTACCTACTCTCCATTGTCCGCGTCGTCTAAGAAG 587
consensus_5768#1 AGTGGTGGAAGTCCATTCACAACCGTTACCTACTCTCCATTGTCCGCGTCGTCTAAGAAG 418
* **********************************************************
consensus_5768#0 AATGATCCAGATGCACCGAGTAAAGCTGGACAGATCGTGTACACGTATGGCAGTGCTAAG 657
consensus_5768#2 AATGATCCAGATGCACCGAGTAAAGCTGGACAGATCGTGTACACGTATGGCAGTGCTAAG 647
consensus_5768#1 AATGATCCAGATGCACCGAGTAAAGCTGGACAGATCGTGTACACGTATGGCAGTGCTAAG 478
************************************************************
consensus_5768#0 TTGCTGAAGCAATTTAACTGGCTACCTACCACTACCGATGGAGGAAAGGAACCTATCCCG 717
consensus_5768#2 TTGCTGAAGCAATTTAACTGGCT------------------------------------- 670
consensus_5768#1 TTGCTGAAGCAATTTAACTGGCTACCTACCACTACCGATGGAGGAAAGGAACCTATCCCG 538
***********************
consensus_5768#0 ATAGATGACGATGTATCGCTGGGCGATAGAAATAGGCGAACGGGCGCTGGCCGCGGCAAG 777
consensus_5768#2 ------------------------------------------------------------
consensus_5768#1 ATAGATGACGATGTATCGCTGGGCGATAGAAATAGGCGAACGGGCGCTGGCCGCGGCAAG 598
consensus_5768#0 GGAATCGGCTTCACAATAAAGTCGGCACAGTTTGCTAACGATGGCTGCAAATACA----- 832
consensus_5768#2 ------------------------------------------------------------
consensus_5768#1 GGAATCGGCTTCACAATAAAGTCGGCACAGTTTGCTAACGATGGCTGCAAATACATGTAT 658
consensus_5768#0 -------------------------
consensus_5768#2 -------------------------
consensus_5768#1 GATTCTAGCTACGATCGAGTGATGA 683
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||