These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5777#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 735 fasta sequence [CAGAATTCGGNCACGAGGTNACGCCGGACCGCGGGACTTTGCGTTGATCAGCGTGCGGCAGGCAGCGCATGTTCGGTAACAGTACGCAAGTGAGCGCGCGCGCGCACGTAACGGTTGTGCCTGTAACGGGGGCCCGCGTGTTCATTTACTGTGAAGTGTGATAGAGAGTTCGGTGCAATTTCTTCCAATCACAGGCCGCTGCCTCTACTCTCTGCTGCCCTTGCCCCTTACTCGCTTGCTGCATTGTGTGCAGCGTACGGAACAGCAACGGTACACAGTGTGAGCGGTTCTTCCC-GCGGAGAAAGCGACGTGCGCCG---GGCGGCGGCGGGAAAG-AAATCCACACAAAAGACGA---CCGCTAATTGGGCAAACATATAGGTCGATGTCGGTGAAGCCCCTGCCCTGTCCCTGCGCTCCTCCTCGTCATCATACATGTCCACCC-TTTCCCAGCGAGCGAGCGACACAGCGAAGATGGCAGACCCAGATGAGGGCGGTGGACTTGCGCTGGCAACGGCACGCACCACGAAA-C-ACCGCCGCCCCACCGACTGCCCGCCATTCCCGAAGTGCCGAAAGCAGGCTCC-GGGGGCGGACGAGAGCAGCTGCGCCACTGCTTCGTGCCGGCGGACGAGAACGGGTGCCTTGGGTTGCA-CTGAGCCGCACA-CGTGGGACCCGTACCCGTGGGT-AGCGG-GTGGTGGACGGTNCGGGGCGATCTTGCCGGGTCGCANCGGTACTGGTGCG] [+] EMBL BX468791 [CAGAATTCGGNCACGAGGTNACGCCGGACCGAGGGACTTTGCGTTGATCAGCGTGCGGCAGGCAGCGCATGTTCGGTAACAGTACGCAAGTGAGCGCGCGCGCGCACGTAACAGTTGTGCCTGTAACGGGAGCCCGCGTGTTCATTTACTGTGAAGTGTGATAGACAGTTCGGTGCAATTTCTTCCAATCACAGGCCGCTGCCTATACTCTCTGCTGCCCTTGCCCCTTTCTCGCTTGCTGCATTGTGTGCAGCGTACGGAACAGCAACGGTACACAGTGTGAGCGGTACTTCCCGGCGGAGAAAGCGACGTGCGCCG AGCGGCGGCGGGAAAGAAAATCCACACGAAAGACGAAAGCCGCTAATTGGGCAAACATATAGGTCGATGTCGGTGAAGCCCCTGCCCTGTCCCTGCGCTCCTCCTCATCATCATACATGTCCACCCGTTTCCCAGCGAGCGAGCGACACAGCGAAGATGGCAGACCCAGATGAGGGCGGTGGACTTGCGCTGGCAACGGCACGCACCACGAAA C ACCG CG CCCACCGACTGCCCGCCATTCCCGAAGGGCCGAAAGCAGGCTCCGGGGGGCGGACGAGAGCAGCTGCGCCACTGCTTCGTGCCGGCGGACGAGAACGGGTGCCTTGGGCTGCA CTGAGCCGCACA CGTGGGACCCGTACCCGTGGGT AGCGG GTGGTGGACGGTNCGGGGCGATCTTGCCGGGTCGCANCGGTACTGGTGCG] [+] EMBL BM639926 [ ccggaaacACGCCGGACCGCGGGACTTTGCGTTGATCAGCGTGCGGCAGGCAGCGCATGTTCGGTAACAGTACGCAAGTGAGCGCGCGCGCG CGTAACGGTTGTGCCTGTAACGGGGGCCCGCGTGTTCATTTACTGTGAAGTGTGATAGAGAGTGCGGTGCAATTTCTTCCAATCACAGGCCGCTGCCTCTACTCTCTGCTGCCCTTGCCCCTTACTCGCTTGCTGCATTGTGTGCAGCGTACGGAACAGCAACGGTACACAGTGTGAGCGGTTCTTCCC GCGGAGAAAGCGACGTGCGCCGGGCGGCGGCGGCGGGAAAG AAATCCACACAAAAGACGA CCGCTAATTGGGCAAACATATAGGTCGATGTCGGTGAAGCTCCTGCCCTGTCCCTGCGCTCCTCCTCGTCATCATACATGTCCACCC TTTCCCAGCGAGCGAGCGACACCGCGAAGATGGCAGAC GATGAGGGCGGTGGACTTGCGTTGGCAACGGCACGCACCACGAAACC ACCGCCGCCCCACCGACTGCCCGCCATTCCCGAAGTGCCGAAAGCAGGCTCC GGGGGCGGACGAGAGCAGCTGCGCCACTGCTTCGTGCCGGCGGACGAGAACGGGTGCCTTGAGTTGCA C ] [+] EMBL BM627798 [ ccgGCGGGACTTTGCGTTGATCAGCGTGCGGCAGGCAGCGCGTGTTCGGTAACAGTACGCAAGTGAGCGCGCGCGCGCACGTAACGGTTGTGCCTGTAACGGGGGGCCGCGTGTTCATTTACTGTGAAGTGTGATAGAGAGTTCGGTACAATTTCTTCCAATCACAGGCCGCTGCCTCTACTATCTGCTGCCCTTGCCCCTTACTCGCTTGCTGCATTGTGTGCAGCGTACGGAACAGCAACGGTACACAGTGTGAGCGGTTCTTCCC GCGGAGAAAGCGACGTGCGCCG GGCGGCGGCGGGAAAG AAATCCACACAAAAGACGA CCGCTAATTGGGCAAACATATAGGTCGATGTCGGTGAAGCCCCTGCCCAGTCCCTGCGCTCCTCCTCGTCATCATACATGTCCACCC TTTCCCAGCGAGCGAGCGACACAGCGAAGATGGCAGACCCAGATGAGGGCGGTGGACTTGCGCTGGCAACGGCACGCACCACAAAG CTACCGCCGCCCCACCCACTGCCCGCCATTCCCGAAGTGCCGAAAGCAGGCTCC GGGGGCGGACGAGAGCAGCTGCGCCACTGCTTCGTGCCGGCGGACGAGAACGGGTGCCTTGGGTTGCACCTGAGCCGCACACCTTGGGACCCGTACCCGTGGGTGAGCGGTGTGGTGGACGGTtcc ] consensusID : consensus_5777#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 606 fasta sequence [CCGATTCCCGAAGGGCCGAAAGCAGGCTCCGGGGGCGGACCAGAGCAGCTGCGCCACTGCTTCCTGCCGGCGGACGAGAACGGGTGCCTTGGGCTGCACCTGAGCCGCACACCGTGGGACCCGTACCCGTGGGTGAGCGGCGTGGTGGACGGTTCCGGGGCGGATCTGGCCGGCGTCCGCACCGGTGACTGTGTGCTGGAATCGAACGGCGAGGATCTGCTCGGCCTGAAGGTGATCGACATTGCCAGGCGGGTGCGCAGCCGGCGCAGTTCCCGCTCCGCACCGGCCGGCGTTGGTCTGTTGCTGTGGAACTCGGGCTTTGAGAAGAATAACCTAAATCCACAGTCGCTGTCCCGGTTCGCCAACTGTTTGCAGGGCATTGCCGGCCTGCTGGAGTGTCCGATCTGTTTGGAAATGATTATACCACCGTCCTGACAGTGCAACCATGGCCATCTGATCTGCTCCGGCTGTCGGTCGCGCACGACCAAGTGTCCGATCTGTCGGGAGGTGCTTGGTCACGGCCGGTGCATCGTGGCGGACAAGCTGTTTCACTATTTGGTGCAAACGCTCGGACATGAAGCTGACCATCAGACAGCGTTGGACCCT] [+] EMBL BM605119 [CCGATTCCCGAAGGGCCGAAAGCAGGCTCCGGGGGCGGACCAGAGCAGCTGCGCCACTGCTTCCTGCCGGCGGACGAGAACGGGTGCCTTGGGCTGCACCTGAGCCGCACACCGTGGGACCCGTACCCGTGGGTGAGCGGCGTGGTGGACGGTTCCGGGGCGGATCTGGCCGGCGTCCGCACCGGTGACTGTGTGCTGGAATCGAACGGCGAGGATCTGCTCGGCCTGAAGGTGATCGACATTGCCAGGCGGGTGCGCAGCCGGCGCAGTTCCCGCTCCGCACCGGCCGGCGTTGGTCTGTTGCTGTGGAACTCGGGCTTTGAGAAGAATAACCTAAATCCACAGTCGCTGTCCCGGTTCGCCAACTGTTTGCAGGGCATTGCCGGCCTGCTGGAGTGTCCGATCTGTTTGGAAATGATTATACCACCGTCCTGACAGTGCAACCATGGCCATCTGATCTGCTCCGGCTGTCGGTCGCGCACGACCAAGTGTCCGATCTGTCGGGAGGTGCTTGGTCACGGCCGGTGCATCGTGGCGGACAAGCTGTTTCACTATTTGGTGCAAACGCTCGGACATGAAGCTGACCATCAGACAGCGTTGGACCCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5777#0 CAGAATTCGGNCACGAGGTNACGCCGGACCGCGGGACTTTGCGTTGATCAGCGTGCGGCA 60 consensus_5777#1 CCGATTCCCGA--AGGGCCGAAAGCAGGCTCCGGGG------GCGGACCAGAG--CAGCT 50 * ** * * * * * * * * * **** * ** *** * * ** consensus_5777#0 GGCAGCGCATGTTCGGTAACAGTACGCAAGTGAGCGCGCGCGCGCACGTAACGGTTGTGC 120 consensus_5777#1 G-CGCCAC-TGCTTCCTGCCGG--CGGACGAGAACGGGTGC-CTTGGGCTGCACCTGAGC 105 * * * * ** * * * * ** * * ** ** * ** * * * ** ** consensus_5777#0 CTGTAACGGGGGCCCGCGTGTTCATTTACTGTGAAGTGTGATAGAGAGTTCGGTGCAATT 180 consensus_5777#1 CGCACACCGTGGGACCCGTACCCGTGGG-TGAGCGGCGTGGTGGACGGTTCCGGGGCGGA 164 * ** * ** * *** * * ** * * *** * ** **** * * consensus_5777#0 TCTTCCAATCACAGGCCGCTGCCTCTACTCTCTGCTGCCCTTGCCCCTTACTCGCTTGCT 240 consensus_5777#1 TCT----------GGCCGGCGTCCGCA----CCGGTGACTGTGTGCTGGAATCGAACGGC 210 *** ***** * * * * * ** * ** * * *** * consensus_5777#0 GCAT-TGTGTGCAGCGTACGGAACAGCAACGGTACACAGTGTGAGCGGTTCTTCCCGCGG 299 consensus_5777#1 GAGGATCTGCTCGGCCTGAAGGTGATCGACATTGCCAGGCGGGTGCG---CAGCCGGCGC 267 * * ** * ** * * * * ** * * * * * *** * ** *** consensus_5777#0 AGAAAGCGACGTGCGCCGGGCGGCGGCGGGAAAGAAATCCACACAAAAGACGACCGCTAA 359 consensus_5777#1 AGTTCCCGCTCCGCACCGGCCGGCGTTGGTCTG----TTGCTGTGGAACTCGGGCTTTGA 323 ** ** ** **** ***** ** * ** ** * * * consensus_5777#0 TTGGGCAAACATATAGGTCGATGTCGGTGAAGCCCCTGCCCTGTCCCTGCGCTCCTCCTC 419 consensus_5777#1 GAAGAATAACCTA-AATCCACAGTCG--------------CTGTCCCGGTTCGCCAACTG 368 * *** ** * * **** ******* * * ** ** consensus_5777#0 GTCATCATACATGTCCACCCTTTCCCAGCGAGCGAGCGACACAGCGAAGATGGCAGACCC 479 consensus_5777#1 TTTGCAGGGCATTGCCGGCCTGCTGGAGTGTCCGATCTGTTTGGAAATGAT--TATACCA 426 * *** ** *** ** * *** * * * *** * *** consensus_5777#0 AGATGAGGGCGGTGGACTTGCGCTGGCAACGGCACGCACCACGAAACACCGCCGCCCCAC 539 consensus_5777#1 CCGTCCTGACAGTGCAACCATGGCCATC-TGATCTGCTCCGGCTGTCGGTCGCGCACGAC 485 * * * *** * * * ** ** * *** * ** consensus_5777#0 CGACTGCCCGCCAT-TCCCGAAGTGCCGAAAGCAGGCTCCGGGGGCGGACGAGAGCAGCT 598 consensus_5777#1 CAAGTGTCCGATCTGTCGGGAGGTGCTTGGTCACGGCCGGTGCATCGTGGCGGACAAGCT 545 * * ** *** * ** ** **** *** * ** ** **** consensus_5777#0 GCGCCACTGCTTCGTGCCGGCGGACGAGAACGGGTGCCTTGGGTTGCACTGAGCCGCACA 658 consensus_5777#1 GTTTCACTATTTGGTGCAAACGCTCGGACATGAA-GCTGACCATCAGACAGCGTTGGACC 604 * **** ** **** ** ** * * ** * ** * * * ** consensus_5777#0 CGTGGGACCCGTACCCGTGGGTAGCGGGTGGTGGACGGTNCGGGGCGATCTTGCCGGGTC 718 consensus_5777#1 CT---------------------------------------------------------- 606 * consensus_5777#0 GCANCGGTACTGGTGCG 735 consensus_5777#1 ----------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||