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Anopheles gambiae
cluster # 5778 cluster # 5778       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5778#0 length = 776 sequences # 1  
consensus_5778#1 length = 769 sequences # 3  

consensusID : consensus_5778#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 776
fasta sequence
                              [GGCCAGAATCGCGCACGAGGTNAACAAACCAAAAACAGCTAACATTCTCGGGGGAAGCCGTTCGCACTTGCATTTAACGAAAAACTCCCTTTCCAATGGCCGGTGAAGTGTTGGTTGATGCATTGCCGTACATCGATCTTGGCTACGATGATCCTGGCGTGCGGGAAGCGGCCATCGCCATGGTGGAGGAAGAATGTCGCCGCTATCGGCCGACGAAAAACTATCTCGAGCATCTGCCCGCCCTCAACACGACCGCGTTCGAAACGGAACTAATGGCGGCCGAATTCGAGCGCATCCAAAACCGGCTGCCGATGGAACCGCTCAGCATGAAGCGGTACGAGCTACCGGCGCCCCGGCCGGCAAGATGAACGAAGTGTCCGCCTGGAGCGAAAGCGTGGACAATTCGATGGGCCCAGCTGGAGCATCAAGCGGTGCGCGCCATGAAACCTCGAGCTAATGGGCCGANGTNATGGGGTGCGAGAATGTTGGCAAGTCGGTACCTCCGAAAACGGTTTGGGTCACGANTGCAGGGCCNAAGTTGTTCAGGGCCCCGNGCATTGNGCCGGGAANGGGGTTTAAAACGGAAAAGGGGAGCAATTACCACAGGGGAANCGTTTGAAACCTTTGGGGGGTCACCGCCAAAGACAGTGCAAACGACAAAATCGGCCCACGTGGTACCTGGGCACGAAACAGCTTTGCGCCAACNCGCCTTTGAAAAGACGGCNCAGTNTGGTGTTTGAATNTACTTGNGGTGTTTCCACAGAGAACGTTCCGAG]

[+] EMBL BX469059             [GGCCAGAATCGCGCACGAGGTNAACAAACCAAAAACAGCTAACATTCTCGGGGGAAGCCGTTCGCACTTGCATTTAACGAAAAACTCCCTTTCCAATGGCCGGTGAAGTGTTGGTTGATGCATTGCCGTACATCGATCTTGGCTACGATGATCCTGGCGTGCGGGAAGCGGCCATCGCCATGGTGGAGGAAGAATGTCGCCGCTATCGGCCGACGAAAAACTATCTCGAGCATCTGCCCGCCCTCAACACGACCGCGTTCGAAACGGAACTAATGGCGGCCGAATTCGAGCGCATCCAAAACCGGCTGCCGATGGAACCGCTCAGCATGAAGCGGTACGAGCTACCGGCGCCCCGGCCGGCAAGATGAACGAAGTGTCCGCCTGGAGCGAAAGCGTGGACAATTCGATGGGCCCAGCTGGAGCATCAAGCGGTGCGCGCCATGAAACCTCGAGCTAATGGGCCGANGTNATGGGGTGCGAGAATGTTGGCAAGTCGGTACCTCCGAAAACGGTTTGGGTCACGANTGCAGGGCCNAAGTTGTTCAGGGCCCCGNGCATTGNGCCGGGAANGGGGTTTAAAACGGAAAAGGGGAGCAATTACCACAGGGGAANCGTTTGAAACCTTTGGGGGGTCACCGCCAAAGACAGTGCAAACGACAAAATCGGCCCACGTGGTACCTGGGCACGAAACAGCTTTGCGCCAACNCGCCTTTGAAAAGACGGCNCAGTNTGGTGTTTGAATNTACTTGNGGTGTTTCCACAGAGAACGTTCCGAG]


>consensus_5778#0 GGCCAGAATCGCGCACGAGGTNAACAAACCAAAAACAGCTAACATTCTCGGGGGAAGCCG TTCGCACTTGCATTTAACGAAAAACTCCCTTTCCAATGGCCGGTGAAGTGTTGGTTGATG CATTGCCGTACATCGATCTTGGCTACGATGATCCTGGCGTGCGGGAAGCGGCCATCGCCA TGGTGGAGGAAGAATGTCGCCGCTATCGGCCGACGAAAAACTATCTCGAGCATCTGCCCG CCCTCAACACGACCGCGTTCGAAACGGAACTAATGGCGGCCGAATTCGAGCGCATCCAAA ACCGGCTGCCGATGGAACCGCTCAGCATGAAGCGGTACGAGCTACCGGCGCCCCGGCCGG CAAGATGAACGAAGTGTCCGCCTGGAGCGAAAGCGTGGACAATTCGATGGGCCCAGCTGG AGCATCAAGCGGTGCGCGCCATGAAACCTCGAGCTAATGGGCCGANGTNATGGGGTGCGA GAATGTTGGCAAGTCGGTACCTCCGAAAACGGTTTGGGTCACGANTGCAGGGCCNAAGTT GTTCAGGGCCCCGNGCATTGNGCCGGGAANGGGGTTTAAAACGGAAAAGGGGAGCAATTA CCACAGGGGAANCGTTTGAAACCTTTGGGGGGTCACCGCCAAAGACAGTGCAAACGACAA AATCGGCCCACGTGGTACCTGGGCACGAAACAGCTTTGCGCCAACNCGCCTTTGAAAAGA CGGCNCAGTNTGGTGTTTGAATNTACTTGNGGTGTTTCCACAGAGAACGTTCCGAG



consensusID : consensus_5778#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 769
fasta sequence
                              [CCGAAACAAACCAAAAACAGCTAACATTCTCGGGGGAAGCCGTTCGCACTTGCATTTAACGAAAAACTCCCTTTCCAATGGCCGGTGAAGTGTTGGTTGATGCATTGCCGTACATCGATCTTGGCTACGATGATCCTGGCGTGCGGGAAGCGGCCATCGCCATGGTGGAGGAAGAATGTCGCCGCTATCGGCCGACGAAAAACTATCTCGAGCATCTGCCCGCCCTCAACACGACCGCGTTCGAAACGGAACTAATGGCGGCCGAATTCGAGCGCATCCAAAACCGGCTGCCGATGGAACCGCTCAGCATGAAGCGGTACGAGCTACCGCCGCCCCCGGCCGGCAAGATGAACGAAGTGTCCGCCTGGAGCGAAAGCGTGGACAATTCGATGGCCCAGCTGGAGCATCAAGCGGTGCGCGCCATGAACCTCGAGCTAATGGCCGAGTATGGGTGCGAGATGTGGAAGTCGTACCTCGAAACGTTGGTCACGATGCAGGCCAAGTGTCAGGCCCGGCTGGCGGAGGTAAAGAAGGAGATACAGGACGTGAACTGGGCGCGCAAGACGAAACAAACGCAGGGCGGCGAGAAGCTGCGCACGCTGGAAGCGCAGTGGGTGATGCTGGTGTCGAAGAACTACGAGATCGAGCAGGCTTGCGCCAAGCTGGAGGAACAAATCTACCACAAAAAGCGGCAATCGAGCGCACTGCGAGCGGAGGGCAGGGCTGAATGAGCTGGTGGATCGATTAAGCATAATAATTATAATATTAT]

[+] EMBL BM605238             [CCGAAACAAACCAAAAACAGCTAACATTCTCGGGGGAAGCCGTTCGCACTTGCATTTAACGAAAAACTCCCTTTCCAATGGCCGGTGAAGTGTTGGTTGATGCATTGCCGTACATCGATCTTGGCTACGATGATCCTGGCGTGCGGGAAGCGGCCATCGCCATGGTGGAGGAAGAATGTCGCCGCTATCGGCCGACGAAAAACTATCTCGAGCATCTGCCCGCCCTCAACACGACCGCGTTCGAAACGGAACTAATGGCGGCCGAATTCGAGCGCATCCAAAACCGGCTGCCGATGGAACCGCTCAGCATGAAGCGGTACGAGCTACCGCCGCCCCCGGCCGGCAAGATGAACGAAGTGTCCGCCTGGAGCGAAAGCGTGGACAATTCGATGGCCCAGCTGGAGCATCAAGCGGTGCGCGCCATGAACCTCGAGCTAATGGCCGAGTATGGGTGCGAGATGTGGAAGTCGTACCTCGAAACGTTGGTCACGATGCAGGCCAAGTGTCAGGCCCGGCTGGCGGAGGTAAAGAAGGAGATACAGGACGTGAACTGGGCGCGCAAGACGAAACAAACGCAGGGCGGCGAGAAGCTGCGCACGCTGGAAGCGCAGTGGGTGATGCTGGTGTCGAAGAACTACGAGATCGAGCAGGCTTGCGCCAAGCTGGAGGAACAAATCTACCACAAAAAGCGGCAATCGAGCG                                                                   ]
[+] EMBL BX612386             [                                         GTTCGCACTTGCATTTAACGAAAAACTCCCTTTCCAATGGCCGGTGAAGTGTTGGTTGATGCATTGCCGTACATCGATCTTGGCTACGATGATCCTGGCGTGCGGGAAGCGGCCATCGCCATGGTGGAGGAAGAATGTCGCCGCTATCGGCCGACGAAAAACTATCTCGAGCATCTGCCCGCCCTCAACACGACCGCGTTCGAAACGGAACTAATGGCGGCCGAATTCGAGCGCATCCAAAACCGGCTGCCGATGGAACCGCTCAGCATGAAGCGGTACGAGCTACCGCCGCCCCCGGCCGGCAAGATGAACGAAGTGTCCGCCTTGAGCGAAAGCGTGGACAATTCGATGGCCCAGCTGGAGCATCAAGCGGTGCGCGCCATGAACCTCGAGCTAATGGCCGAGTATGGGTGCGAGATGTGGAAGTCGTACCTCGAAACGTTGGTCACGATGCAGGCCAAGTGTCAGGCCCGGCTGGCGGAGGTAAAGAAGGAGATACAGGACGTGAACTGGGCGCGCAAGACGAAACAAACGCAGGGCGGCGAGAAGCTGCGCACGCTGGAAGCGCAGTGGGTGATGCTGGTGTCGAAGAACTACGAGATCGAGCAGGCTTGCGCCAAGCTGGAGGAACAAATCTACCACAAAAAGCGGCAATCGAGCGCACTGCGAGCGGAGGGCAGGGCTGAATGAGCTGGTGGATCGATTAAGCATAATAATTATAATATTAT]
[+] EMBL BM630209             [                                                 ccGCATTTAACGAAAAACTCCCTTTCCAATGGCCGGTGAAGTGTTGGTTGATGCATTGCCGTACATCGATCTTGGCTACGATGATCCTGGCGTGCGGGAAGCGGCCATCGCCATGGTGGAGGAAGAATGTCGCCGCTATCGGCCGACGAAAAACTATCTCGAGCATCTGCCCGCCCTCAACACGACCGCGTTCGAAACGGAACTAATGGCGGCCGAATTCGAGCGCATCCAAAACCGGCTGCCGATGGAACCGCTCAGCATGAAGCGGTACGAGCTACCGCCGCCCCCGGCCGGCAAGATGAACGAAGTGTCCGCCTGGAGCGAAAGCGTGGACAATTCGATGGCCCAGCTGGAGCATCAAGCGGTGCGCGCCATGAACCTCGAGCTAATGGCCGAGTATGGGTGCGAGATGTGGAAGTCGTACCTCGAAACGTTGGTCACGATGCAGGCCAAGTGTCAGGCCCGGCTGGCGGAGGTAAAGAAGGAGATACAGGACGTGAACTGGGCGCGCAAGACGAAACAAACGCAGGGCGGCGAGAAGCTGCGCACGCTGGAAGCGCAGTGGGTGATGCTGGTGTCGAAGAACTACGAGATCGAGCAGGCTTGCGCCAAGCTGGAGG                                                                                                    ]


>consensus_5778#1 CCGAAACAAACCAAAAACAGCTAACATTCTCGGGGGAAGCCGTTCGCACTTGCATTTAAC GAAAAACTCCCTTTCCAATGGCCGGTGAAGTGTTGGTTGATGCATTGCCGTACATCGATC TTGGCTACGATGATCCTGGCGTGCGGGAAGCGGCCATCGCCATGGTGGAGGAAGAATGTC GCCGCTATCGGCCGACGAAAAACTATCTCGAGCATCTGCCCGCCCTCAACACGACCGCGT TCGAAACGGAACTAATGGCGGCCGAATTCGAGCGCATCCAAAACCGGCTGCCGATGGAAC CGCTCAGCATGAAGCGGTACGAGCTACCGCCGCCCCCGGCCGGCAAGATGAACGAAGTGT CCGCCTGGAGCGAAAGCGTGGACAATTCGATGGCCCAGCTGGAGCATCAAGCGGTGCGCG CCATGAACCTCGAGCTAATGGCCGAGTATGGGTGCGAGATGTGGAAGTCGTACCTCGAAA CGTTGGTCACGATGCAGGCCAAGTGTCAGGCCCGGCTGGCGGAGGTAAAGAAGGAGATAC AGGACGTGAACTGGGCGCGCAAGACGAAACAAACGCAGGGCGGCGAGAAGCTGCGCACGC TGGAAGCGCAGTGGGTGATGCTGGTGTCGAAGAACTACGAGATCGAGCAGGCTTGCGCCA AGCTGGAGGAACAAATCTACCACAAAAAGCGGCAATCGAGCGCACTGCGAGCGGAGGGCA GGGCTGAATGAGCTGGTGGATCGATTAAGCATAATAATTATAATATTAT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5778#0      GGCCAGAATCGCGCACGAGGTNAACAAACCAAAAACAGCTAACATTCTCGGGGGAAGCCG 60
consensus_5778#1      ------------------CCGAAACAAACCAAAAACAGCTAACATTCTCGGGGGAAGCCG 42
                                            **************************************

consensus_5778#0      TTCGCACTTGCATTTAACGAAAAACTCCCTTTCCAATGGCCGGTGAAGTGTTGGTTGATG 120
consensus_5778#1      TTCGCACTTGCATTTAACGAAAAACTCCCTTTCCAATGGCCGGTGAAGTGTTGGTTGATG 102
                      ************************************************************

consensus_5778#0      CATTGCCGTACATCGATCTTGGCTACGATGATCCTGGCGTGCGGGAAGCGGCCATCGCCA 180
consensus_5778#1      CATTGCCGTACATCGATCTTGGCTACGATGATCCTGGCGTGCGGGAAGCGGCCATCGCCA 162
                      ************************************************************

consensus_5778#0      TGGTGGAGGAAGAATGTCGCCGCTATCGGCCGACGAAAAACTATCTCGAGCATCTGCCCG 240
consensus_5778#1      TGGTGGAGGAAGAATGTCGCCGCTATCGGCCGACGAAAAACTATCTCGAGCATCTGCCCG 222
                      ************************************************************

consensus_5778#0      CCCTCAACACGACCGCGTTCGAAACGGAACTAATGGCGGCCGAATTCGAGCGCATCCAAA 300
consensus_5778#1      CCCTCAACACGACCGCGTTCGAAACGGAACTAATGGCGGCCGAATTCGAGCGCATCCAAA 282
                      ************************************************************

consensus_5778#0      ACCGGCTGCCGATGGAACCGCTCAGCATGAAGCGGTACGAGCTACCGGCGCCCC-GGCCG 359
consensus_5778#1      ACCGGCTGCCGATGGAACCGCTCAGCATGAAGCGGTACGAGCTACCGCCGCCCCCGGCCG 342
                      *********************************************** ****** *****

consensus_5778#0      GCAAGATGAACGAAGTGTCCGCCTGGAGCGAAAGCGTGGACAATTCGATGGGCCCAGCTG 419
consensus_5778#1      GCAAGATGAACGAAGTGTCCGCCTGGAGCGAAAGCGTGGACAATTCGATGG-CCCAGCTG 401
                      *************************************************** ********

consensus_5778#0      GAGCATCAAGCGGTGCGCGCCATGAAACCTCGAGCTAATGGGCCGANGTNATGGGGTGCG 479
consensus_5778#1      GAGCATCAAGCGGTGCGCGCCATGAA-CCTCGAGCTAATGG-CCGAG--TATGGG-TGCG 456
                      ************************** ************** ****    ***** ****

consensus_5778#0      AGAATGTTGGCAAGTCGGTACCTCCGAAAACGGTTTGGGTCACGANTGCAGGGCCNAAGT 539
consensus_5778#1      AGA-TGTGG--AAGTCG-TACCTC--GAAACG---TTGGTCACGAT-GCAGG--CCAAGT 504
                      *** *** *  ****** ******   *****   * ********  *****  * ****

consensus_5778#0      TGTTCAGGGCCCCGNGCATTGNGCCGGGAANGGGGTTTAAAACGGAAAAGGGGAGCAATT 599
consensus_5778#1      G--TCAGGCCCGGCTGGCGGAGGTAAAGAAGGAGATACAGGACGTGAACTGGGCGCG--C 560
                         ***** **    *      *    *** * * *  *  ***  **  *** **    

consensus_5778#0      ACCACAGGGGAANCGTTTGAAACCTTTGGGGGGTCACCGCCAAAGACAGTGCAAACGACA 659
consensus_5778#1      AAGACGAAACAAACGC---AGGGCGGCGAGAAGCTGCGCACGCTGGAAGCGCAGTGGGTG 617
                      *  **     ** **    *   *   * *  *   *   *   *  ** ***   *   

consensus_5778#0      AAATCGGCCCACGTGGTACCTGGGCACGAAACAGCTTTGCGCCAACNCGCCTTTGAAAAG 719
consensus_5778#1      ATGCTGGTGT-CGAAGAACTACGAGATCGAGCAGGCTTGCGCCAAGCTGGAGGAACAAAT 676
                      *    **    **  * **   *  *   * ***  *********   *       *** 

consensus_5778#0      --ACGGCNCAGTNTGGTGTTTGAATNTACT-TGNGGTGTTTCCACAGA-GAACGTTCCGA 775
consensus_5778#1      CTACCACAAAAAGCGGCAATCGAGCGCACTGCGAGCGGAGGGCAGGGCTGAATGAGCTGG 736
                        **  *  *    **   * **    ***  * *  *    **  *  *** *  * * 

consensus_5778#0      G-------------------------------- 776
consensus_5778#1      TGGATCGATTAAGCATAATAATTATAATATTAT 769
                                                       




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)