These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5786#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 706 fasta sequence [CCGCCCACGCGTCCGGCATCTTGTACAGTTGTTATCGTGCAGGCACGAAACCCCCCGAACGCATTACGTGTGCAGTGATTAACAGTGAAAACCCAAACGTTCTGTCGCAATGTCGTGGTTGTTCGGGTATAAAAGTCAAGCTCCTCCGCAGGGCGGTGATGGTGGACCGGAACCGCCGGGACCGCCACCGTCGTCGGCCGGCAGCGCCGGTCAGATGGCGGGCGATGCCAATTTGACCAAGGCCGAACGGAAAGCCATGGAAGCGTATCGGTTCGATTCGTCGGCGCTGGAACGGGCGGCCGAAGCTGCACGCACCCTGGAGCGTTCGAAGCACGCCCGGGAAGCGCTGGAGCTGTCGAAAATGCAGGAAAACACTCGCCAGCAGGAGTATCTGGCAAAGGTGAAGGAGTACGAGGCTCACATAGAAGCGTCCAAGGTGGAGCATAAGCGCGTGGACCATGAGGAGCGTCGAAAGACGCTGGCAGAGGAAACCAAGCAACAGCAGCAACGCGCCCAGTACCAGGACCAGCTCGCTCGCAAACGGTACGAGGAGCAGCTGGCCCAGCAGCAGCGGGTGCAGGAGGAAAATCTACGCAAACAGGAGGAAAGCGTTGCGAAACAGGAGGCAATGCGCCGCAAGACCATCGAGCACGAGATGGAGCTGCGGGAGAAAAACAAGATGAAGCTGCTCGAGGCGGAACTGCGT] [+] EMBL BM648967 [CCGCCCACGCGTCCGGCATCTTGTACAGTTGTTATCGTGCAGGCACGAAACCCCCCGAACGCATTACGTGTGCAGTGATTAACAGTGAAAACCCAAACGTTCTGTCGCAATGTCGTGGTTGTTCGGGTATAAAAGTCAAGCTCCTCCGCAGGGCGGTGATGGTGGACCGGAACCGCCGGGACCGCCACCGTCGTCGGCCGGCAGCGCCGGTCAGATGGCGGGCGATGCCAATTTGACCAAGGCCGAACGGAAAGCCATGGAAGCGTATCGGTTCGATTCGTCGGCGCTGGAACGGGCGGCCGAAGCTGCACGCACCCTGGAGCGTTCGAAGCACGCCCGGGAAGCGCTGGAGCTGTCGAAAATGCAGGAAAACACTCGCCAGCAGGAGTATCTGGCAAAGGTGAAGGAGTACGAGGCTCACATAGAAGCGTCCAAGGTGGAGCATAAGCGCGTGGACCATGAGGAGCGTCGAAAGACGCTGGCAGAGGAAACCAAGCAACAGCAGCAACGCGCCCAGTACCAGGACCAGCTCGCTCGCAAACGGTACGAGGAGCAGCTGGCCCAGCAGCAGCGGGTGCAGGAGGAAAATCTACGCAAACAGGAGGAAAGCGTTGCGAAACAGGAGGCAATGCGCCGCAAGACCATCGAGCACGAGATGGAGCTGCGGGAGAAAAACAAGATGAAGCTGCTCGAGGCGGAACTGCGT] [+] EMBL BM606493 [ ccgCCCCCCGAACGCATTACGTGTGCAGTGATTAACAGTGAAAACCCAAACGTTCTGTCGCAATGTCGTGGTTGTTCGGGTATAAAAGTCAAGCTCCTCCGCAGGGCGGTGATGGTGGACCGGAACCGCCGGGACCGCCACCGTCGTCGGCCGGCAGCGCCGGTCAGATGGCGGGCGATGCCAATTTGACCAAGGCCGAACGGAAAGCCATGGAAGCGTATCGGTTCGATTCGTCGGCGCTGGAACGGGCGGCCGAAGCTGCACGCACCCTGGAGCGTTCGAAGCACGCCCGGGAAGCGCTGGAGCTGTCGAAAATGCAGGAAAACACTCGCCAGCAGGAGTATCTGGCAAAGGTGAAGGAGTACGAGGCTCACATAGAAGCGTCCAAGGTGGAGCATAAGCGCGTGGACCATGAGGAGCGTCGAAAGACGCTGGCAGAGGAAACCAAGCAACAGCAGCAACGCGCCCAGTACCAGGACCAGCTCGCTCGCAAACGGTACGAGGAGCAGCTGGCCCAGCAGCAGCGGGTGCAGGAGGAAAATCTACGCAAACAGGAGGA ] consensusID : consensus_5786#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 627 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGATCGGAGCGAGGAGCACATTTTCCTGAGCACGGTTACAGAACGTTGCTAACCGAATTGTCTGCATCTTGTACAGTTGTTATCGTGCAGGCACGAAACCCCCCGAACGCATTACGTGTGCAGTGATTAACAGTGAAAACCCAAACGTTCTGTCGCAATGTCGTGGTTGTTCGGGTATAAAAGTCAAGCTCCTCCGCAGGGCGGTGATGGTGGACCGGAACCGCCGGGACCGCCACCGTCGTCGGCCGGCAGCGCCGGTCAGATGGCGGGCGATGCCAATTTGACCAAGGCCGAACGGAAAGCCATGGAAGCGTATCGGTTCGATTCGTCGGCGCTGGAACGGGCGGCCGAAGCTGCACGCACCCTGGAGCGTTCGAAGCACGCCCGGGAAGCGCTGGAGCTGTCGAAAATGCAGGAAAACACTCGCCAGCAGGAGTATCTGGCAAAGGTGAAGGAGTACGAGGCTCACATAGAAGCGTCCAAGGTGGAGCATAAGCGCGTGGACCATGAGGAGCGTCGAAAGACGCTGGCAGAGGAAACCAAGCAACAGCAGCAACGCGCCCCAGTACCCAGGACCAGCTCGCTCGCAAACGGTACGAGGA] [+] EMBL BM617138 [CCGCCCACGCGTCCGCCCACGCGTCCGATCGGAGCGAGGAGCACATTTTCCTGAGCACGGTTACAGAACGTTGCTAACCGAATTGTCTGCATCTTGTACAGTTGTTATCGTGCAGGCACGAAACCCCCCGAACGCATTACGTGTGCAGTGATTAACAGTGAAAACCCAAACGTTCTGTCGCAATGTCGTGGTTGTTCGGGTATAAAAGTCAAGCTCCTCCGCAGGGCGGTGATGGTGGACCGGAACCGCCGGGACCGCCACCGTCGTCGGCCGGCAGCGCCGGTCAGATGGCGGGCGATGCCAATTTGACCAAGGCCGAACGGAAAGCCATGGAAGCGTATCGGTTCGATTCGTCGGCGCTGGAACGGGCGGCCGAAGCTGCACGCACCCTGGAGCGTTCGAAGCACGCCCGGGAAGCGCTGGAGCTGTCGAAAATGCAGGAAAACACTCGCCAGCAGGAGTATCTGGCAAAGGTGAAGGAGTACGAGGCTCACATAGAAGCGTCCAAGGTGGAGCATAAGCGCGTGGACCATGAGGAGCGTCGAAAGACGCTGGCAGAGGAAACCAAGCAACAGCAGCAACGCGCCCCAGTACCCAGGACCAGCTCGCTCGCAAACGGTACGAGGA] [+] EMBL BM649483 [ CCGACCGGAGCGAGGAGCACATTTTCCTGAGCACGGTTACAGAACGTTGCTAACCGAATTGTCTGCATCTCGTACAGTTGTTATCGTGCAGGCACAAAACCCCCCGAACGCATTACGTGTGCAGTGATAAACAGTGAAAGTCCAAACGTTCTGTCGCAATGTCGTGGTTGTTCGGGTATAAAAGTCAAGCTCCTCCGCAGGGCGGTGATGGTGGACCGGAACCGCCGGGACCGCCACCGTCGTCGGCCGGCAGCGCCGGTCAGATGGCGGGCGATGCCAATTTGACCAAGGCCGAACGGAAAGCCATGGAAGCGTATCGGTTCGATTCGTCGGCGCTGGAACGGGCGGCCGAAGCTGCACGCACCCTGGAGCGTTCGAAGCACGCCCGGGAAGCGCTGGAGCTGTCAAAAATGCAGGAAAACACTCGCCAGCAGGAGTATCTGGCAAAGGTGAAGGAGTACGAGGCTCACATAGAAGCGTCCAAGGTGGAGCATAAGCGCGTGGACCATGAGGAGCGTCGAAAGACGCTGGCAGAGGAAACCA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5786#0 ------------------------------------------------------------ consensus_5786#1 CCGCCCACGCGTCCGCCCACGCGTCCGATCGGAGCGAGGAGCACATTTTCCTGAGCACGG 60 consensus_5786#0 -------------CCGCCCACGCGTCCGGCATCTTGTACAGTTGTTATCGTGCAGGCACG 47 consensus_5786#1 TTACAGAACGTTGCTAACCGAATTGTCTGCATCTTGTACAGTTGTTATCGTGCAGGCACG 120 * ** * ******************************** consensus_5786#0 AAACCCCCCGAACGCATTACGTGTGCAGTGATTAACAGTGAAAACCCAAACGTTCTGTCG 107 consensus_5786#1 AAACCCCCCGAACGCATTACGTGTGCAGTGATTAACAGTGAAAACCCAAACGTTCTGTCG 180 ************************************************************ consensus_5786#0 CAATGTCGTGGTTGTTCGGGTATAAAAGTCAAGCTCCTCCGCAGGGCGGTGATGGTGGAC 167 consensus_5786#1 CAATGTCGTGGTTGTTCGGGTATAAAAGTCAAGCTCCTCCGCAGGGCGGTGATGGTGGAC 240 ************************************************************ consensus_5786#0 CGGAACCGCCGGGACCGCCACCGTCGTCGGCCGGCAGCGCCGGTCAGATGGCGGGCGATG 227 consensus_5786#1 CGGAACCGCCGGGACCGCCACCGTCGTCGGCCGGCAGCGCCGGTCAGATGGCGGGCGATG 300 ************************************************************ consensus_5786#0 CCAATTTGACCAAGGCCGAACGGAAAGCCATGGAAGCGTATCGGTTCGATTCGTCGGCGC 287 consensus_5786#1 CCAATTTGACCAAGGCCGAACGGAAAGCCATGGAAGCGTATCGGTTCGATTCGTCGGCGC 360 ************************************************************ consensus_5786#0 TGGAACGGGCGGCCGAAGCTGCACGCACCCTGGAGCGTTCGAAGCACGCCCGGGAAGCGC 347 consensus_5786#1 TGGAACGGGCGGCCGAAGCTGCACGCACCCTGGAGCGTTCGAAGCACGCCCGGGAAGCGC 420 ************************************************************ consensus_5786#0 TGGAGCTGTCGAAAATGCAGGAAAACACTCGCCAGCAGGAGTATCTGGCAAAGGTGAAGG 407 consensus_5786#1 TGGAGCTGTCGAAAATGCAGGAAAACACTCGCCAGCAGGAGTATCTGGCAAAGGTGAAGG 480 ************************************************************ consensus_5786#0 AGTACGAGGCTCACATAGAAGCGTCCAAGGTGGAGCATAAGCGCGTGGACCATGAGGAGC 467 consensus_5786#1 AGTACGAGGCTCACATAGAAGCGTCCAAGGTGGAGCATAAGCGCGTGGACCATGAGGAGC 540 ************************************************************ consensus_5786#0 GTCGAAAGACGCTGGCAGAGGAAACCAAGCAACAGCAGCAACGCGCCC-AGTACC-AGGA 525 consensus_5786#1 GTCGAAAGACGCTGGCAGAGGAAACCAAGCAACAGCAGCAACGCGCCCCAGTACCCAGGA 600 ************************************************ ****** **** consensus_5786#0 CCAGCTCGCTCGCAAACGGTACGAGGAGCAGCTGGCCCAGCAGCAGCGGGTGCAGGAGGA 585 consensus_5786#1 CCAGCTCGCTCGCAAACGGTACGAGGA--------------------------------- 627 *************************** consensus_5786#0 AAATCTACGCAAACAGGAGGAAAGCGTTGCGAAACAGGAGGCAATGCGCCGCAAGACCAT 645 consensus_5786#1 ------------------------------------------------------------ consensus_5786#0 CGAGCACGAGATGGAGCTGCGGGAGAAAAACAAGATGAAGCTGCTCGAGGCGGAACTGCG 705 consensus_5786#1 ------------------------------------------------------------ consensus_5786#0 T 706 consensus_5786#1 - |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||