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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5802#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1275 fasta sequence
[CAACAGTTTAGCATACTGGACGACAGCAACTTTGACTTCATCGATGACAGTGCCGATCTGTTCAACCGCAACTACCCGCATCAGCCGCCGCCGGTGTCGGCATCATCGGGCGGGCTAGAACCAAGGTCACTGGTCGCAGCGGCAACATCGGCGGGAGCAGCTTCGACGTTCCCCATTACCAAAGTGTTGCGTATGTGAAACAACTGTAAAAATAGAAGTAATCTAGTCTACCAGCGAAGCTGCTCCCAGCCCCATCGTAAGCAAATCAACGATGAGCTGAACGAGGTCGAGTCGGAGATGAAAGCCCACGAAAGCAAGGAGGAGAACAAACATTCCAACAAAGACAAACAGATGGCGCTGGGGCGGAAAAAGTTCAACATGGATCCAAAGAAAGGAATAGAATTTTTATACGAAAACCAGCTGCTAAGGACGGATCCGCAGGACGTGGCACAGTTCCTATACAAGGGAGAAGGTCTCAACAAAACGGCCATCGGCGATTATCTGGGCGAAAAGAACGACTTTAACGAGCAGGTGTTGAAGGCCTTTGTAGAGTTACACGATTTTACGAATCTTATACTGGTGCAAGCTTTAAGACAATTCCTCTGGTCATTCAGACTGCCCGGCGAGGCGCAGAAGATCGATCGCATGATGGAATGCTTCGCCCAGCGGTACTGCCAGCTCAATCCGGACATCTTCACCAACACGGACACGTGCTACGTGTTGAGCTTTGCCATCATTATGCTCAACACCTCGCTCCACAATCCATCGGTAAAAGAGAAGCCCACGGTTGAACAGTTCATTTCCATGAACCGTGGTATCAACAATGGAGGCGATTTGCCGCGCGAACTGTTAGAGTCCCTGTACGAGTCGATACGAGCTGAACCGTTTAAAATACCTCAGGACGATGGGAACGATCTGATGCACACCTTCTTCAACCCGGACAAGGAGGGCTGGCTGTGGAAGCAGGGCGGAAGATACAAATCGTGGAAACGAAGATGGTTTATCCTGAACGATAACTGTCTGTACTACTTCGAGTACACCACCGACAAGGAGCCGCGAGGGATCATTCCATTGGAAAACATTGCGGTGCGCGAGGTAACGGACCGGAGCAAACCGCACTGCTTCGAGCTGCACGCCAGCGGCGGGGCCGACATCATCAAGGCGTGCAAAACCGACAGCGAGGGTAAGGGTGGTGGAAGGTAAGCACACCGTCTACCGGATGTCGGCCGCGACCGAGGAGGAGCAGCAGGAGTGGATCACCCGCCTGGAACCAGT]
[+] EMBL BX606016 [CAACAGTTTAGCATACTGGACGACAGCAACTTTGACTTCATCGATGACAGTGCCGATCTGTTCAACCGCAACTACCCGCATCAGCCGCCGCCGGTGTCGGCATCATCGGGCGGGCTAGAACCAAGGTCACTGGTCGCAGCGGCAACATCGGCGGGAGCAGCTTCGACGTTCCCCATTACCAAAGTGTTGCGTATGTGAAACAACTGTAAAAATAGAAGTAATCTAGTCTACCAGCGAAGCTGCTCCCAGCCCCATCGTAAGCAAATCAACGATGAGCTGAACGAGGTCGAGTCGGAGATGAAAGCCCACGAAAGCAAGGAGGAGAACAAACATTCCAACAAAGACAAACAGATGGCGCTGGGGCGGAAAAAGTTCAACATGGATCCAAAGAAAGGAATAGAATTTTTATACGAAAACCAGCTGCTAAGGACGGATCCGCAGGACGTGGCACAGTTCCTATACAAGGGAGAAGGTCTCAACAAAACGGCCATCGGCGATTATCTGGGCGAAAAGAACGACTTTAACGAGCAGGTGTTGAAGGCCTTTGTAGAGTTACACGATTTTACGAATCTTATACTGGTGCAAGC ]
[+] EMBL BX609373 [ CCAGCTGCTAAGGACGGATCCGCAGGACGTGGCACAGTTCCTATACAAGGGAGAAGGTCTCAACAAAACGGCCATCGGCGATTATCTGGGCGAAAAGAACGACTTTAACGAGCAGGTGTTGAAGGCCTTTGTAGAGTTACACGATTTTACGAATCTTATACTGGTGCAAGCTTTAAGACAATTCCTCTGGTCATTCAGACTGCCCGGCGAGGCGCAGAAGATCGATCGCATGATGGAATGCTTCGCCCAGCGGTACTGCCAGCTCAATCCGGACATCTTCACCAACACGGACACGTGCTACGTGTTGAGCTTTGCCATCATTATGCTCAACACCTCGCTCCACAATCCATCGGTAAAAGAGAAGCCCACGGTTGAACAGTTCATTTCCATGAACCGTGGTATCAACAATGGAGGCGATTTGCCGCGCGAACTGTTAGAGTCCCTGTACGAGTCGATACGAGCTGAACCGTTTAAAATACCTCAGGACGATGGGAACGATCTGATGCACACCTTCTTCAACCCGGACAAGGAGGGCTGGCTGTGGAAGCAGGGCGGAAGATACAAATCGTGGAAACGAAGATGGTTTATCCTGAACGATAACTGTCTGTACTACTTCGAGTACACCACCGACAAGGAGCCGCGAGGGATCATTCCATTGGAAAACATTGCGGTGCGCGAGGTAACGGACCGGAGCAAACCGCACTGCTTCGAGCTGCACGCCAGCGGCGGGGCCGACATCATCAAGGCGTGCAAAA ]
[+] EMBL BM609712 [ ccGCTTTAAGACAATTCCTCTGGTCATTCAGACTGCCCGGCGAGGCGCAGAAGATCGATCGCATGATGGAATGCTTCGCCCAGCGGTACTGCCAGCTCAATCCGGACATCTTCACCAACACGGACACGTGCTACGTGTTGAGCTTTGCCATCATTATGCTCAACACCTCGCTCCACAATCCATCGGTAAAAGAGAAGCCCACGGTTGAACAGTTCATTTCCATGAACCGTGGTATCAACAATGGAGGCGATTTGCCGCGCGAACTGTTAGAGTCCCTGTACGAGTCGATACGAGCTGAACCGTTTAAAATACCTCAGGACGATGGGAACGATCTGATGCACACCTTCTTCAACCCGGACAAGGAAGGGTGGCTGTGGAAGCAGGGCGGAAGATACAAATCGTGGAAGCGAAGATGGTTTATCCTGAACGATAACTGTCTGTACTACTTCGAGTACACCACCGACAAGGAGCCGAGAGGGATCATTCCATTGGAAAACATTGCGGTGCGCGAGGTAACGGACCGGAGCAAACCGCACTGCTTCGAGCTGCACGCCAGCGGCGGGGCCGACATCATCAAGGCGTGCAAAACCGACAGCGAGGGTAAGGGTGGTGGAAGGTAAGCACACCGTCTACCGGATGTCGGCCGCGACCGAGGAGGAGCAGCAGGAGTGGATCACCCGCCTGGAACCAGT]
consensusID : consensus_5802#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 562 fasta sequence
[TGTTGATAGAGCTGCGAAGGAAGAAACAGGAGATTTTACTCGAGATACAGCAAATCAACGATGAGCTGAACGAGGTCGAGTCGGAGATGAAAGCCCACGAAAGCAAGGAGGAGAACAAACATTCCAACAAAGACAAACAGATGGCGCTGGGGCGGAAAAAGTTCAACATGGATCCAAAGAAAGGAATAGAATTTTTATACGAAAACCAGCTGCTAAGGACGGATCCGCAGGACGTGGCACAGTTCCTATACAAGGGAGAAGGTCTCAACAAAACGGCCATCGGCGATTATCTGGGCGAAAAGAACGACTTTAACGAGCAGGTGTTGAAGGCCTTTGTAGAGTTACACGATTTTACGAATCTTATACTGGTGCAAGCTTTAAGACAATTCCTCTGGTCATTCAGACTGCCCGGCGAGGCGCAGAAGATCGATCGCATGATGGAATGCTTCGCCCAGCGGTACTGCCAGCTCAACCCGGACATCTTCACCAACACGGACACGTGCTACGTGTTGAGCTTTGCCATCATTATGCTCAACACCTCGCTCCACAATCCATCGGTAAA]
[+] EMBL BX604659 [TGTTGATAGAGCTGCGAAGGAAGAAACAGGAGATTTTACTCGAGATACAGCAAATCAACGATGAGCTGAACGAGGTCGAGTCGGAGATGAAAGCCCACGAAAGCAAGGAGGAGAACAAACATTCCAACAAAGACAAACAGATGGCGCTGGGGCGGAAAAAGTTCAACATGGATCCAAAGAAAGGAATAGAATTTTTATACGAAAACCAGCTGCTAAGGACGGATCCGCAGGACGTGGCACAGTTCCTATACAAGGGAGAAGGTCTCAACAAAACGGCCATCGGCGATTATCTGGGCGAAAAGAACGACTTTAACGAGCAGGTGTTGAAGGCCTTTGTAGAGTTACACGATTTTACGAATCTTATACTGGTGCAAGCTTTAAGACAATTCCTCTGGTCATTCAGACTGCCCGGCGAGGCGCAGAAGATCGATCGCATGATGGAATGCTTCGCCCAGCGGTACTGCCAGCTCAACCCGGACATCTTCACCAACACGGACACGTGCTACGTGTTGAGCTTTGCCATCATTATGCTCAACACCTCGCTCCACAATCCATCGGTAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5802#0 CAACAGTTTAGCATACTGGACGACAGCAACTTTGACTTCATCGATGACAGTGCCGATCTG 60
consensus_5802#1 ------------------------------------------------------------
consensus_5802#0 TTCAACCGCAACTACCCGCATCAGCCGCCGCCGGTGTCGGCATCATCGGGCGGGCTAGAA 120
consensus_5802#1 ------------------------------------------------------------
consensus_5802#0 CCAAGGTCACTGGTCGCAGCGGCAACATCGGCGGGAGCAGCTTCGACGTTCCCCATTACC 180
consensus_5802#1 ------------------------------------------------------------
consensus_5802#0 AAAGTGTTGCGTATGTGAAACAACTGTAAAAATAGAAGTAATCTAGTCTACCAGCGAAGC 240
consensus_5802#1 -----------TGT-TGATAGAGCTGCGAAGGAAGAAACAGGAGATTTTACTCGAGATAC 48
* * *** * * *** ** **** * * * *** * ** *
consensus_5802#0 TGCTCCCAGCCCCATCGTAAGCAAATCAACGATGAGCTGAACGAGGTCGAGTCGGAGATG 300
consensus_5802#1 -------------------AGCAAATCAACGATGAGCTGAACGAGGTCGAGTCGGAGATG 89
*****************************************
consensus_5802#0 AAAGCCCACGAAAGCAAGGAGGAGAACAAACATTCCAACAAAGACAAACAGATGGCGCTG 360
consensus_5802#1 AAAGCCCACGAAAGCAAGGAGGAGAACAAACATTCCAACAAAGACAAACAGATGGCGCTG 149
************************************************************
consensus_5802#0 GGGCGGAAAAAGTTCAACATGGATCCAAAGAAAGGAATAGAATTTTTATACGAAAACCAG 420
consensus_5802#1 GGGCGGAAAAAGTTCAACATGGATCCAAAGAAAGGAATAGAATTTTTATACGAAAACCAG 209
************************************************************
consensus_5802#0 CTGCTAAGGACGGATCCGCAGGACGTGGCACAGTTCCTATACAAGGGAGAAGGTCTCAAC 480
consensus_5802#1 CTGCTAAGGACGGATCCGCAGGACGTGGCACAGTTCCTATACAAGGGAGAAGGTCTCAAC 269
************************************************************
consensus_5802#0 AAAACGGCCATCGGCGATTATCTGGGCGAAAAGAACGACTTTAACGAGCAGGTGTTGAAG 540
consensus_5802#1 AAAACGGCCATCGGCGATTATCTGGGCGAAAAGAACGACTTTAACGAGCAGGTGTTGAAG 329
************************************************************
consensus_5802#0 GCCTTTGTAGAGTTACACGATTTTACGAATCTTATACTGGTGCAAGCTTTAAGACAATTC 600
consensus_5802#1 GCCTTTGTAGAGTTACACGATTTTACGAATCTTATACTGGTGCAAGCTTTAAGACAATTC 389
************************************************************
consensus_5802#0 CTCTGGTCATTCAGACTGCCCGGCGAGGCGCAGAAGATCGATCGCATGATGGAATGCTTC 660
consensus_5802#1 CTCTGGTCATTCAGACTGCCCGGCGAGGCGCAGAAGATCGATCGCATGATGGAATGCTTC 449
************************************************************
consensus_5802#0 GCCCAGCGGTACTGCCAGCTCAATCCGGACATCTTCACCAACACGGACACGTGCTACGTG 720
consensus_5802#1 GCCCAGCGGTACTGCCAGCTCAACCCGGACATCTTCACCAACACGGACACGTGCTACGTG 509
*********************** ************************************
consensus_5802#0 TTGAGCTTTGCCATCATTATGCTCAACACCTCGCTCCACAATCCATCGGTAAAAGAGAAG 780
consensus_5802#1 TTGAGCTTTGCCATCATTATGCTCAACACCTCGCTCCACAATCCATCGGTAAA------- 562
*****************************************************
consensus_5802#0 CCCACGGTTGAACAGTTCATTTCCATGAACCGTGGTATCAACAATGGAGGCGATTTGCCG 840
consensus_5802#1 ------------------------------------------------------------
consensus_5802#0 CGCGAACTGTTAGAGTCCCTGTACGAGTCGATACGAGCTGAACCGTTTAAAATACCTCAG 900
consensus_5802#1 ------------------------------------------------------------
consensus_5802#0 GACGATGGGAACGATCTGATGCACACCTTCTTCAACCCGGACAAGGAGGGCTGGCTGTGG 960
consensus_5802#1 ------------------------------------------------------------
consensus_5802#0 AAGCAGGGCGGAAGATACAAATCGTGGAAACGAAGATGGTTTATCCTGAACGATAACTGT 1020
consensus_5802#1 ------------------------------------------------------------
consensus_5802#0 CTGTACTACTTCGAGTACACCACCGACAAGGAGCCGCGAGGGATCATTCCATTGGAAAAC 1080
consensus_5802#1 ------------------------------------------------------------
consensus_5802#0 ATTGCGGTGCGCGAGGTAACGGACCGGAGCAAACCGCACTGCTTCGAGCTGCACGCCAGC 1140
consensus_5802#1 ------------------------------------------------------------
consensus_5802#0 GGCGGGGCCGACATCATCAAGGCGTGCAAAACCGACAGCGAGGGTAAGGGTGGTGGAAGG 1200
consensus_5802#1 ------------------------------------------------------------
consensus_5802#0 TAAGCACACCGTCTACCGGATGTCGGCCGCGACCGAGGAGGAGCAGCAGGAGTGGATCAC 1260
consensus_5802#1 ------------------------------------------------------------
consensus_5802#0 CCGCCTGGAACCAGT 1275
consensus_5802#1 ---------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||